Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS19635

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,466,025	+		DDA3937_RS19630	0.53	+2.0
4,466,052	+		DDA3937_RS19630	0.54	-0.9
4,466,053	-		DDA3937_RS19630	0.54	-1.3
4,466,157	+		DDA3937_RS19630	0.60	-0.2
4,466,157	+		DDA3937_RS19630	0.60	-1.1
4,466,158	-		DDA3937_RS19630	0.60	+1.0
4,466,173	+				+4.7
4,466,173	+		DDA3937_RS19630	0.61	-0.6
4,466,262	+		DDA3937_RS19630	0.66	-0.8
4,466,262	+		DDA3937_RS19630	0.66	-2.7
4,466,263	-		DDA3937_RS19630	0.67	-2.2
4,466,270	+		DDA3937_RS19630	0.67	+1.2
4,466,271	-		DDA3937_RS19630	0.67	-1.3
4,466,271	-		DDA3937_RS19630	0.67	-1.8
4,466,271	-		DDA3937_RS19630	0.67	-1.4
4,466,352	+		DDA3937_RS19630	0.72	+3.7
4,466,353	-		DDA3937_RS19630	0.72	+0.7
4,466,353	-		DDA3937_RS19630	0.72	+1.5
4,466,401	-		DDA3937_RS19630	0.75	+0.9
4,466,401	-		DDA3937_RS19630	0.75	-0.8
4,466,427	+		DDA3937_RS19630	0.76	+1.4
4,466,595	+		DDA3937_RS19630	0.86	-0.4
4,466,596	-		DDA3937_RS19630	0.86	-2.6
4,466,624	+		DDA3937_RS19630	0.88	-1.0
4,466,625	-		DDA3937_RS19630	0.88	-0.5
4,466,637	-		DDA3937_RS19630	0.88	-2.8
4,466,661	+		DDA3937_RS19630	0.90	+2.2
4,466,662	-		DDA3937_RS19630	0.90	-1.8
4,466,662	-		DDA3937_RS19630	0.90	-2.4
4,466,662	-		DDA3937_RS19630	0.90	-1.1
4,466,662	-		DDA3937_RS19630	0.90	-0.8
4,466,663	+		DDA3937_RS19630	0.90	-0.1
4,466,663	+		DDA3937_RS19630	0.90	-2.6
4,466,663	+		DDA3937_RS19630	0.90	+0.0
4,466,664	-		DDA3937_RS19630	0.90	-1.5
4,466,664	-		DDA3937_RS19630	0.90	+0.8
4,466,671	-				-0.7
4,466,755	+				+0.6
4,466,767	+				+1.0
4,466,767	+				-1.8
4,466,768	-				-2.5
4,466,768	-				-2.5
4,466,768	-				-0.8
4,466,800	-				-1.9
4,466,800	-				+1.5
4,466,836	-				-0.0
4,466,843	+				-2.3
4,466,843	+				+0.6
4,466,843	+				+2.4
4,466,845	+				+1.3
4,466,845	+				-2.2
4,466,845	+				-1.4
4,466,846	-				+0.3
4,466,846	-				-1.2
4,466,846	-				+3.0
4,466,846	-				+0.5
4,466,846	-				-0.9
4,466,925	+				-0.2
4,466,927	+				-0.1
4,466,927	+				+0.5
4,466,927	+				-1.9
4,466,927	+				+3.0
4,466,927	+				-0.3
4,466,927	+				-0.0
4,466,928	-				+1.3
4,466,928	-				+1.2
4,466,928	-				+0.3
4,466,946	+				-0.5
4,466,946	+				-1.8
4,466,946	+				-0.5
4,466,947	-				+3.1
4,466,947	-				-1.9
4,466,964	+				+0.6
4,466,965	-				+2.5
4,466,965	-				+0.9
4,466,965	-				-2.6
4,466,981	+				+0.8
4,466,981	+				-0.4
4,466,999	-				-2.1
4,466,999	-				-2.2
4,466,999	-				-1.1
4,467,012	+				-2.7
4,467,012	+				-0.7
4,467,046	+				-2.2
4,467,047	-				-1.5
4,467,047	-				-1.3
4,467,047	-				-1.1
4,467,180	-				-2.1
4,467,305	+		DDA3937_RS19635	0.13	-2.1
4,467,305	+		DDA3937_RS19635	0.13	-0.8
4,467,306	-		DDA3937_RS19635	0.13	-0.8
4,467,314	+		DDA3937_RS19635	0.13	-1.9
4,467,315	-		DDA3937_RS19635	0.13	+0.1
4,467,315	-		DDA3937_RS19635	0.13	+0.4
4,467,315	-		DDA3937_RS19635	0.13	-1.6
4,467,428	+		DDA3937_RS19635	0.18	+1.2
4,467,428	+		DDA3937_RS19635	0.18	-0.9
4,467,429	-		DDA3937_RS19635	0.18	+0.1
4,467,429	-		DDA3937_RS19635	0.18	-2.0
4,467,429	-		DDA3937_RS19635	0.18	-0.0
4,467,429	-		DDA3937_RS19635	0.18	-1.2
4,467,429	-		DDA3937_RS19635	0.18	+1.0
4,467,487	+		DDA3937_RS19635	0.21	-1.4
4,467,488	-		DDA3937_RS19635	0.21	-2.8
4,467,542	+		DDA3937_RS19635	0.23	-3.5
4,467,543	-		DDA3937_RS19635	0.23	-0.0
4,467,543	-		DDA3937_RS19635	0.23	-0.8
4,467,543	-		DDA3937_RS19635	0.23	-0.9
4,467,786	+		DDA3937_RS19635	0.34	-1.3
4,467,786	+		DDA3937_RS19635	0.34	-1.0
4,467,787	-		DDA3937_RS19635	0.34	-2.9
4,467,787	-		DDA3937_RS19635	0.34	-0.8
4,467,787	-		DDA3937_RS19635	0.34	-1.4
4,467,787	-		DDA3937_RS19635	0.34	-0.4
4,467,924	+		DDA3937_RS19635	0.39	+0.6
4,467,925	-		DDA3937_RS19635	0.39	-1.2
4,467,925	-		DDA3937_RS19635	0.39	-0.5
4,467,925	-		DDA3937_RS19635	0.39	-0.4
4,468,060	+		DDA3937_RS19635	0.45	+0.2
4,468,063	+		DDA3937_RS19635	0.45	-0.4
4,468,064	-		DDA3937_RS19635	0.45	-0.0
4,468,064	-		DDA3937_RS19635	0.45	+0.5
4,468,064	-		DDA3937_RS19635	0.45	+1.0
4,468,064	-		DDA3937_RS19635	0.45	-1.6
4,468,064	-		DDA3937_RS19635	0.45	+4.4
4,468,262	+		DDA3937_RS19635	0.54	-1.6
4,468,455	+		DDA3937_RS19635	0.62	-1.4
4,468,730	-		DDA3937_RS19635	0.74	-0.0
4,469,224	+				-0.3
4,469,225	-				-0.4
4,469,225	-				+1.0
4,469,227	+				+1.8
4,469,227	+				+2.1
4,469,227	+				+1.3
4,469,345	+				-0.4
4,469,345	+				+1.2
4,469,408	+				-1.4
4,469,409	-				-3.5
4,469,409	-				-0.4
4,469,409	-				+1.1
4,469,411	+				+2.2
4,469,411	+				-2.8
4,469,415	-				+0.6
4,469,415	-				-2.4
4,469,417	+				-0.8
4,469,417	+				-1.1
4,469,417	+				-0.9
4,469,417	+				-3.3
4,469,418	-				+0.3
4,469,418	-				-0.4
4,469,418	-				-1.7
4,469,418	-				-2.0
4,469,418	-				-0.1
4,469,418	-				-0.1
4,469,418	-				+1.0
4,469,418	-				+0.3
4,469,428	-				+0.2
4,469,447	-				+0.4
4,469,477	+				-0.4
4,469,642	-				-0.6
4,469,644	-				+1.8
4,469,700	+		DDA3937_RS19640	0.17	+0.8
4,469,700	+		DDA3937_RS19640	0.17	-3.2
4,469,703	-		DDA3937_RS19640	0.17	-1.8
4,469,703	-		DDA3937_RS19640	0.17	-2.5
4,469,800	+		DDA3937_RS19640	0.37	-1.4
4,469,883	-		DDA3937_RS19640	0.53	+2.0
4,469,892	-		DDA3937_RS19640	0.55	-0.4
4,469,906	+		DDA3937_RS19640	0.58	+0.1
4,469,907	-		DDA3937_RS19640	0.58	-1.8
4,469,940	-		DDA3937_RS19640	0.64	-0.0
4,470,190	+				-0.4
4,470,194	+				+1.6
4,470,257	+				-2.0
4,470,257	+				-1.6
4,470,261	+				-3.0
4,470,262	-				-3.0
4,470,262	-				+0.2
4,470,293	+				-1.9
4,470,294	-				-3.1
4,470,294	-				+0.7
4,470,302	+				+2.0
4,470,306	+				+0.3
4,470,306	+				+0.7
4,470,307	-				+2.1
4,470,307	-				-1.0
4,470,309	-				-3.6
4,470,309	-				-2.5
4,470,309	-				-0.3
4,470,312	+				-1.6
4,470,313	-				-0.8
4,470,315	+				+1.0
4,470,316	-				-1.6
4,470,316	-				+0.5
4,470,334	+				-3.5