Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS18735

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,279,282	+				-2.1
4,279,295	+				-1.7
4,279,295	+				-0.6
4,279,295	+				-0.1
4,279,295	+				+1.2
4,279,296	-				+0.7
4,279,296	-				+0.7
4,279,300	+				+1.7
4,279,363	-				-0.3
4,279,469	-		DDA3937_RS18730	0.18	-1.5
4,279,469	-		DDA3937_RS18730	0.18	-0.1
4,279,469	-		DDA3937_RS18730	0.18	-1.4
4,279,673	+		DDA3937_RS18730	0.39	-1.1
4,279,673	+		DDA3937_RS18730	0.39	-3.4
4,279,674	-		DDA3937_RS18730	0.39	-2.2
4,279,674	-		DDA3937_RS18730	0.39	+0.7
4,279,674	-		DDA3937_RS18730	0.39	-0.5
4,279,739	+		DDA3937_RS18730	0.46	-0.5
4,279,763	+		DDA3937_RS18730	0.49	-2.7
4,279,763	+		DDA3937_RS18730	0.49	+0.5
4,279,763	+		DDA3937_RS18730	0.49	-0.5
4,279,763	+		DDA3937_RS18730	0.49	+0.5
4,279,763	+		DDA3937_RS18730	0.49	-1.5
4,279,764	-		DDA3937_RS18730	0.49	-0.9
4,279,764	-		DDA3937_RS18730	0.49	+0.9
4,279,764	-		DDA3937_RS18730	0.49	+0.3
4,279,764	-		DDA3937_RS18730	0.49	-3.2
4,279,764	-		DDA3937_RS18730	0.49	+1.8
4,279,764	-		DDA3937_RS18730	0.49	-0.1
4,279,795	-		DDA3937_RS18730	0.52	-0.7
4,279,795	-		DDA3937_RS18730	0.52	+0.5
4,279,795	-		DDA3937_RS18730	0.52	-0.8
4,279,795	-		DDA3937_RS18730	0.52	-0.2
4,279,795	-		DDA3937_RS18730	0.52	-0.3
4,279,795	-		DDA3937_RS18730	0.52	+2.2
4,279,795	-		DDA3937_RS18730	0.52	+1.6
4,279,811	-		DDA3937_RS18730	0.54	-0.8
4,279,828	+		DDA3937_RS18730	0.56	-0.2
4,279,858	+		DDA3937_RS18730	0.59	-1.8
4,279,920	-		DDA3937_RS18730	0.65	-1.3
4,279,920	-		DDA3937_RS18730	0.65	+0.4
4,279,920	-		DDA3937_RS18730	0.65	+0.1
4,280,157	-				+0.6
4,280,246	+				-1.1
4,280,295	+				+0.5
4,280,295	+				+1.7
4,280,296	-				+0.5
4,280,378	-		DDA3937_RS18735	0.19	-0.5
4,280,413	+		DDA3937_RS18735	0.25	-2.0
4,280,413	+		DDA3937_RS18735	0.25	-0.5
4,280,413	+		DDA3937_RS18735	0.25	-0.4
4,280,413	+		DDA3937_RS18735	0.25	+0.9
4,280,414	-		DDA3937_RS18735	0.26	-0.5
4,280,414	-		DDA3937_RS18735	0.26	+1.3
4,280,414	-		DDA3937_RS18735	0.26	+0.4
4,280,414	-		DDA3937_RS18735	0.26	+0.9
4,280,414	-		DDA3937_RS18735	0.26	-1.5
4,280,511	+		DDA3937_RS18735	0.44	-2.9
4,280,564	+		DDA3937_RS18735	0.54	+0.3
4,280,565	-		DDA3937_RS18735	0.54	+4.2
4,280,565	-		DDA3937_RS18735	0.54	-1.9
4,280,613	-		DDA3937_RS18735	0.63	+0.3
4,280,613	-		DDA3937_RS18735	0.63	+1.9
4,280,657	-		DDA3937_RS18735	0.71	+0.7
4,280,657	-		DDA3937_RS18735	0.71	+2.3
4,280,657	-		DDA3937_RS18735	0.71	+0.6
4,280,707	+		DDA3937_RS18735	0.81	+1.6
4,280,711	-		DDA3937_RS18735	0.82	-1.9
4,280,758	+				-1.5
4,280,758	+				-0.2
4,280,759	-				+0.3
4,280,759	-				-0.0
4,280,798	+				+3.0
4,280,804	+				-2.3
4,280,804	+				-2.9
4,280,804	+				-0.8
4,280,804	+				-2.1
4,280,804	+				-1.2
4,280,804	+				-0.5
4,280,804	+				-0.4
4,280,804	+				-0.1
4,280,804	+				+1.5
4,280,805	-				+0.6
4,280,805	-				+1.6
4,280,805	-				-0.8
4,280,805	-				-0.1
4,280,805	-				-0.2
4,280,805	-				-0.2
4,280,805	-				+2.0
4,280,806	+				+0.8
4,280,806	+				+0.9
4,280,806	+				-0.8
4,280,806	+				+2.2
4,280,806	+				-1.8
4,280,807	-				+0.6
4,280,807	-				-0.5
4,280,807	-				+1.0
4,280,807	-				-2.8
4,280,807	-				-3.9
4,280,807	-				+1.5
4,280,933	-		DDA3937_RS18740	0.13	-0.7
4,280,999	+		DDA3937_RS18740	0.20	+0.5
4,280,999	+		DDA3937_RS18740	0.20	+1.0
4,280,999	+		DDA3937_RS18740	0.20	-2.8
4,281,000	-		DDA3937_RS18740	0.20	-0.8
4,281,000	-		DDA3937_RS18740	0.20	-2.0
4,281,124	-		DDA3937_RS18740	0.33	-2.8
4,281,146	+		DDA3937_RS18740	0.35	-2.1
4,281,146	+		DDA3937_RS18740	0.35	-2.8
4,281,146	+		DDA3937_RS18740	0.35	+1.9
4,281,146	+				+0.9
4,281,147	-		DDA3937_RS18740	0.36	+1.4
4,281,147	-		DDA3937_RS18740	0.36	+2.1
4,281,147	-		DDA3937_RS18740	0.36	+0.6
4,281,147	-		DDA3937_RS18740	0.36	+1.0
4,281,197	+		DDA3937_RS18740	0.41	-2.6
4,281,198	-		DDA3937_RS18740	0.41	+0.3
4,281,210	-		DDA3937_RS18740	0.42	-0.5
4,281,216	-		DDA3937_RS18740	0.43	-1.3
4,281,216	-		DDA3937_RS18740	0.43	-2.3
4,281,335	+		DDA3937_RS18740	0.56	+1.1
4,281,336	-		DDA3937_RS18740	0.56	+0.8
4,281,439	+		DDA3937_RS18740	0.67	+3.1
4,281,439	+		DDA3937_RS18740	0.67	+0.7
4,281,521	+		DDA3937_RS18740	0.75	+0.8
4,281,521	+		DDA3937_RS18740	0.75	+1.3
4,281,522	-		DDA3937_RS18740	0.76	+0.1
4,281,522	-		DDA3937_RS18740	0.76	-2.5
4,281,522	-		DDA3937_RS18740	0.76	+0.1
4,281,522	-		DDA3937_RS18740	0.76	+0.7
4,281,522	-		DDA3937_RS18740	0.76	-0.3
4,281,522	-		DDA3937_RS18740	0.76	-3.1
4,281,522	-		DDA3937_RS18740	0.76	+1.1
4,281,522	-		DDA3937_RS18740	0.76	-1.0
4,281,522	-		DDA3937_RS18740	0.76	+1.2
4,281,548	+		DDA3937_RS18740	0.78	-1.8
4,281,566	+		DDA3937_RS18740	0.80	-2.5
4,281,567	-		DDA3937_RS18740	0.80	+0.7
4,281,567	-		DDA3937_RS18740	0.80	-0.6
4,281,567	-		DDA3937_RS18740	0.80	+0.1
4,281,567	-		DDA3937_RS18740	0.80	+1.6
4,281,585	+		DDA3937_RS18740	0.82	+3.7
4,281,586	-		DDA3937_RS18740	0.82	-1.2
4,281,586	-		DDA3937_RS18740	0.82	-2.2
4,281,595	-		DDA3937_RS18740	0.83	-2.9
4,281,617	+		DDA3937_RS18740	0.86	+0.1
4,281,618	-		DDA3937_RS18740	0.86	-0.0
4,281,653	+		DDA3937_RS18740	0.89	-1.5
4,281,654	-		DDA3937_RS18740	0.90	+0.7
4,281,654	-		DDA3937_RS18740	0.90	+1.7
4,281,668	+				+0.6
4,281,668	+				+0.3
4,281,669	-				+2.9
4,281,669	-				-1.0
4,281,669	-				-1.3
4,281,669	-				-1.2
4,281,669	-				+1.3
4,281,720	+				-2.6
4,281,792	-				+0.5