Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS18490 and DDA3937_RS18495 are separated by 29 nucleotides DDA3937_RS18495 and DDA3937_RS18500 are separated by 186 nucleotides DDA3937_RS18500 and DDA3937_RS18505 are separated by 119 nucleotides
DDA3937_RS18490: DDA3937_RS18490 - LysR family transcriptional regulator ArgP, at 4,225,989 to 4,226,882
_RS18490
DDA3937_RS18495: DDA3937_RS18495 - oxidative stress defense protein, at 4,226,912 to 4,227,640
_RS18495
DDA3937_RS18500: DDA3937_RS18500 - IclR family transcriptional regulator, at 4,227,827 to 4,228,663
_RS18500
DDA3937_RS18505: DDA3937_RS18505 - small-conductance mechanosensitive channel MscS, at 4,228,783 to 4,229,667
_RS18505
Position (kb) 4227
4228
4229 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4226.979 kb on + strand at 4226.979 kb on + strand at 4226.979 kb on + strand at 4226.980 kb on - strand at 4226.980 kb on - strand at 4227.011 kb on - strand, within DDA3937_RS18495 at 4227.051 kb on + strand, within DDA3937_RS18495 at 4227.051 kb on + strand at 4227.051 kb on + strand, within DDA3937_RS18495 at 4227.051 kb on + strand, within DDA3937_RS18495 at 4227.052 kb on - strand, within DDA3937_RS18495 at 4227.052 kb on - strand, within DDA3937_RS18495 at 4227.079 kb on - strand, within DDA3937_RS18495 at 4227.144 kb on - strand, within DDA3937_RS18495 at 4227.217 kb on + strand, within DDA3937_RS18495 at 4227.217 kb on + strand, within DDA3937_RS18495 at 4227.272 kb on + strand, within DDA3937_RS18495 at 4227.273 kb on - strand, within DDA3937_RS18495 at 4227.342 kb on + strand, within DDA3937_RS18495 at 4227.342 kb on + strand, within DDA3937_RS18495 at 4227.400 kb on + strand, within DDA3937_RS18495 at 4227.417 kb on + strand, within DDA3937_RS18495 at 4227.418 kb on - strand, within DDA3937_RS18495 at 4227.486 kb on - strand, within DDA3937_RS18495 at 4227.486 kb on - strand, within DDA3937_RS18495 at 4227.560 kb on + strand, within DDA3937_RS18495 at 4227.602 kb on - strand at 4227.677 kb on - strand at 4227.699 kb on + strand at 4227.699 kb on + strand at 4227.699 kb on + strand at 4227.699 kb on + strand at 4227.700 kb on - strand at 4227.700 kb on - strand at 4227.700 kb on - strand at 4227.700 kb on - strand at 4227.701 kb on + strand at 4227.701 kb on + strand at 4227.702 kb on - strand at 4227.702 kb on - strand at 4227.702 kb on - strand at 4227.702 kb on - strand at 4227.702 kb on - strand at 4227.702 kb on - strand at 4227.717 kb on + strand at 4227.795 kb on + strand at 4227.796 kb on - strand at 4227.796 kb on - strand at 4227.799 kb on + strand at 4227.799 kb on + strand at 4227.799 kb on + strand at 4227.800 kb on - strand at 4227.800 kb on - strand at 4227.800 kb on - strand at 4227.807 kb on - strand at 4227.828 kb on + strand at 4227.829 kb on - strand at 4227.917 kb on + strand, within DDA3937_RS18500 at 4227.918 kb on - strand, within DDA3937_RS18500 at 4227.951 kb on + strand, within DDA3937_RS18500 at 4227.951 kb on + strand, within DDA3937_RS18500 at 4228.090 kb on + strand, within DDA3937_RS18500 at 4228.090 kb on + strand, within DDA3937_RS18500 at 4228.090 kb on + strand, within DDA3937_RS18500 at 4228.090 kb on + strand, within DDA3937_RS18500 at 4228.090 kb on + strand, within DDA3937_RS18500 at 4228.091 kb on - strand, within DDA3937_RS18500 at 4228.091 kb on - strand, within DDA3937_RS18500 at 4228.091 kb on - strand, within DDA3937_RS18500 at 4228.091 kb on - strand, within DDA3937_RS18500 at 4228.091 kb on - strand, within DDA3937_RS18500 at 4228.161 kb on + strand, within DDA3937_RS18500 at 4228.162 kb on - strand, within DDA3937_RS18500 at 4228.162 kb on - strand, within DDA3937_RS18500 at 4228.162 kb on - strand, within DDA3937_RS18500 at 4228.196 kb on + strand, within DDA3937_RS18500 at 4228.196 kb on + strand, within DDA3937_RS18500 at 4228.197 kb on - strand, within DDA3937_RS18500 at 4228.197 kb on - strand, within DDA3937_RS18500 at 4228.204 kb on + strand, within DDA3937_RS18500 at 4228.204 kb on + strand, within DDA3937_RS18500 at 4228.204 kb on + strand, within DDA3937_RS18500 at 4228.204 kb on + strand, within DDA3937_RS18500 at 4228.204 kb on + strand, within DDA3937_RS18500 at 4228.204 kb on + strand, within DDA3937_RS18500 at 4228.204 kb on + strand, within DDA3937_RS18500 at 4228.204 kb on + strand, within DDA3937_RS18500 at 4228.204 kb on + strand, within DDA3937_RS18500 at 4228.205 kb on - strand, within DDA3937_RS18500 at 4228.205 kb on - strand, within DDA3937_RS18500 at 4228.205 kb on - strand, within DDA3937_RS18500 at 4228.205 kb on - strand, within DDA3937_RS18500 at 4228.205 kb on - strand, within DDA3937_RS18500 at 4228.205 kb on - strand, within DDA3937_RS18500 at 4228.205 kb on - strand, within DDA3937_RS18500 at 4228.205 kb on - strand, within DDA3937_RS18500 at 4228.205 kb on - strand, within DDA3937_RS18500 at 4228.205 kb on - strand, within DDA3937_RS18500 at 4228.205 kb on - strand, within DDA3937_RS18500 at 4228.218 kb on + strand, within DDA3937_RS18500 at 4228.218 kb on + strand, within DDA3937_RS18500 at 4228.218 kb on + strand, within DDA3937_RS18500 at 4228.218 kb on + strand, within DDA3937_RS18500 at 4228.219 kb on - strand, within DDA3937_RS18500 at 4228.219 kb on - strand, within DDA3937_RS18500 at 4228.219 kb on - strand, within DDA3937_RS18500 at 4228.219 kb on - strand, within DDA3937_RS18500 at 4228.219 kb on - strand, within DDA3937_RS18500 at 4228.219 kb on - strand, within DDA3937_RS18500 at 4228.237 kb on + strand, within DDA3937_RS18500 at 4228.417 kb on - strand, within DDA3937_RS18500 at 4228.446 kb on + strand, within DDA3937_RS18500 at 4228.447 kb on - strand, within DDA3937_RS18500 at 4228.538 kb on - strand, within DDA3937_RS18500 at 4228.554 kb on - strand, within DDA3937_RS18500 at 4228.569 kb on - strand, within DDA3937_RS18500 at 4228.569 kb on - strand, within DDA3937_RS18500 at 4228.630 kb on + strand at 4228.630 kb on + strand at 4228.630 kb on + strand at 4228.631 kb on - strand at 4228.631 kb on - strand at 4228.631 kb on - strand at 4228.631 kb on - strand at 4228.631 kb on - strand at 4228.631 kb on - strand at 4228.640 kb on + strand at 4228.641 kb on - strand at 4228.641 kb on - strand at 4228.664 kb on + strand at 4228.722 kb on - strand at 4228.734 kb on - strand at 4228.781 kb on + strand at 4228.781 kb on + strand at 4228.781 kb on + strand at 4228.782 kb on - strand at 4228.782 kb on - strand at 4228.782 kb on - strand at 4228.782 kb on - strand at 4228.782 kb on - strand at 4228.785 kb on - strand at 4228.785 kb on - strand at 4228.785 kb on - strand at 4228.785 kb on - strand at 4228.791 kb on + strand at 4228.919 kb on + strand, within DDA3937_RS18505 at 4229.032 kb on - strand, within DDA3937_RS18505 at 4229.041 kb on + strand, within DDA3937_RS18505 at 4229.087 kb on + strand, within DDA3937_RS18505 at 4229.088 kb on - strand, within DDA3937_RS18505 at 4229.104 kb on - strand, within DDA3937_RS18505 at 4229.104 kb on - strand, within DDA3937_RS18505 at 4229.136 kb on + strand, within DDA3937_RS18505 at 4229.136 kb on + strand, within DDA3937_RS18505 at 4229.137 kb on - strand, within DDA3937_RS18505 at 4229.137 kb on - strand, within DDA3937_RS18505 at 4229.158 kb on - strand, within DDA3937_RS18505 at 4229.436 kb on + strand, within DDA3937_RS18505 at 4229.437 kb on - strand, within DDA3937_RS18505 at 4229.526 kb on + strand, within DDA3937_RS18505 at 4229.526 kb on + strand, within DDA3937_RS18505 at 4229.526 kb on + strand, within DDA3937_RS18505 at 4229.526 kb on + strand, within DDA3937_RS18505 at 4229.526 kb on + strand, within DDA3937_RS18505 at 4229.526 kb on + strand, within DDA3937_RS18505 at 4229.526 kb on + strand, within DDA3937_RS18505 at 4229.527 kb on - strand, within DDA3937_RS18505 at 4229.527 kb on - strand, within DDA3937_RS18505 at 4229.527 kb on - strand, within DDA3937_RS18505 at 4229.588 kb on + strand at 4229.588 kb on + strand at 4229.601 kb on + strand at 4229.601 kb on + strand at 4229.601 kb on + strand at 4229.602 kb on - strand at 4229.602 kb on - strand at 4229.602 kb on - strand at 4229.602 kb on - strand at 4229.602 kb on - strand at 4229.602 kb on - strand at 4229.650 kb on + strand at 4229.650 kb on + strand at 4229.650 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 4,226,979 + -1.5 4,226,979 + +0.0 4,226,979 + +1.5 4,226,980 - -1.8 4,226,980 - -3.7 4,227,011 - DDA3937_RS18495 0.14 +0.1 4,227,051 + DDA3937_RS18495 0.19 +0.0 4,227,051 + -0.1 4,227,051 + DDA3937_RS18495 0.19 +0.7 4,227,051 + DDA3937_RS18495 0.19 +2.8 4,227,052 - DDA3937_RS18495 0.19 +0.2 4,227,052 - DDA3937_RS18495 0.19 -0.5 4,227,079 - DDA3937_RS18495 0.23 -2.3 4,227,144 - DDA3937_RS18495 0.32 -0.1 4,227,217 + DDA3937_RS18495 0.42 -1.9 4,227,217 + DDA3937_RS18495 0.42 -0.1 4,227,272 + DDA3937_RS18495 0.49 -1.2 4,227,273 - DDA3937_RS18495 0.50 -1.7 4,227,342 + DDA3937_RS18495 0.59 -1.4 4,227,342 + DDA3937_RS18495 0.59 +1.9 4,227,400 + DDA3937_RS18495 0.67 -1.3 4,227,417 + DDA3937_RS18495 0.69 -1.1 4,227,418 - DDA3937_RS18495 0.69 +0.1 4,227,486 - DDA3937_RS18495 0.79 +0.0 4,227,486 - DDA3937_RS18495 0.79 +0.4 4,227,560 + DDA3937_RS18495 0.89 -1.1 4,227,602 - -2.3 4,227,677 - -1.3 4,227,699 + +0.8 4,227,699 + -2.5 4,227,699 + -1.3 4,227,699 + -0.1 4,227,700 - +0.3 4,227,700 - -1.3 4,227,700 - +0.6 4,227,700 - -0.7 4,227,701 + -0.1 4,227,701 + -0.1 4,227,702 - +4.0 4,227,702 - -0.5 4,227,702 - +0.5 4,227,702 - +0.1 4,227,702 - -0.7 4,227,702 - -1.4 4,227,717 + +1.8 4,227,795 + -0.6 4,227,796 - +0.5 4,227,796 - -2.4 4,227,799 + +1.3 4,227,799 + -1.4 4,227,799 + +0.8 4,227,800 - -0.1 4,227,800 - -1.7 4,227,800 - -1.3 4,227,807 - -1.1 4,227,828 + +0.7 4,227,829 - +1.5 4,227,917 + DDA3937_RS18500 0.11 -0.3 4,227,918 - DDA3937_RS18500 0.11 +1.4 4,227,951 + DDA3937_RS18500 0.15 -1.9 4,227,951 + DDA3937_RS18500 0.15 +1.4 4,228,090 + DDA3937_RS18500 0.31 +0.6 4,228,090 + DDA3937_RS18500 0.31 -2.4 4,228,090 + DDA3937_RS18500 0.31 -1.7 4,228,090 + DDA3937_RS18500 0.31 -0.5 4,228,090 + DDA3937_RS18500 0.31 -1.5 4,228,091 - DDA3937_RS18500 0.32 +0.9 4,228,091 - DDA3937_RS18500 0.32 -2.0 4,228,091 - DDA3937_RS18500 0.32 -0.2 4,228,091 - DDA3937_RS18500 0.32 +0.1 4,228,091 - DDA3937_RS18500 0.32 -0.5 4,228,161 + DDA3937_RS18500 0.40 -0.5 4,228,162 - DDA3937_RS18500 0.40 +1.8 4,228,162 - DDA3937_RS18500 0.40 +0.1 4,228,162 - DDA3937_RS18500 0.40 -3.1 4,228,196 + DDA3937_RS18500 0.44 -0.0 4,228,196 + DDA3937_RS18500 0.44 -1.8 4,228,197 - DDA3937_RS18500 0.44 -0.6 4,228,197 - DDA3937_RS18500 0.44 -0.5 4,228,204 + DDA3937_RS18500 0.45 -1.5 4,228,204 + DDA3937_RS18500 0.45 -3.2 4,228,204 + DDA3937_RS18500 0.45 -2.0 4,228,204 + DDA3937_RS18500 0.45 -2.2 4,228,204 + DDA3937_RS18500 0.45 +1.3 4,228,204 + DDA3937_RS18500 0.45 -0.8 4,228,204 + DDA3937_RS18500 0.45 -1.1 4,228,204 + DDA3937_RS18500 0.45 +0.9 4,228,204 + DDA3937_RS18500 0.45 -0.1 4,228,205 - DDA3937_RS18500 0.45 +1.0 4,228,205 - DDA3937_RS18500 0.45 -2.3 4,228,205 - DDA3937_RS18500 0.45 -1.8 4,228,205 - DDA3937_RS18500 0.45 +1.2 4,228,205 - DDA3937_RS18500 0.45 +0.6 4,228,205 - DDA3937_RS18500 0.45 +0.4 4,228,205 - DDA3937_RS18500 0.45 -1.5 4,228,205 - DDA3937_RS18500 0.45 -0.1 4,228,205 - DDA3937_RS18500 0.45 -2.0 4,228,205 - DDA3937_RS18500 0.45 -1.5 4,228,205 - DDA3937_RS18500 0.45 -2.2 4,228,218 + DDA3937_RS18500 0.47 +2.1 4,228,218 + DDA3937_RS18500 0.47 -0.2 4,228,218 + DDA3937_RS18500 0.47 -3.3 4,228,218 + DDA3937_RS18500 0.47 -0.7 4,228,219 - DDA3937_RS18500 0.47 +1.8 4,228,219 - DDA3937_RS18500 0.47 -0.1 4,228,219 - DDA3937_RS18500 0.47 -0.1 4,228,219 - DDA3937_RS18500 0.47 +1.4 4,228,219 - DDA3937_RS18500 0.47 +2.2 4,228,219 - DDA3937_RS18500 0.47 +0.1 4,228,237 + DDA3937_RS18500 0.49 -1.8 4,228,417 - DDA3937_RS18500 0.70 -1.3 4,228,446 + DDA3937_RS18500 0.74 +2.1 4,228,447 - DDA3937_RS18500 0.74 -1.5 4,228,538 - DDA3937_RS18500 0.85 +1.9 4,228,554 - DDA3937_RS18500 0.87 -1.4 4,228,569 - DDA3937_RS18500 0.89 -3.4 4,228,569 - DDA3937_RS18500 0.89 -1.8 4,228,630 + +1.9 4,228,630 + -2.4 4,228,630 + +1.5 4,228,631 - +1.5 4,228,631 - +1.1 4,228,631 - -0.8 4,228,631 - +0.5 4,228,631 - -0.4 4,228,631 - -1.4 4,228,640 + -3.0 4,228,641 - -2.2 4,228,641 - -2.1 4,228,664 + +0.6 4,228,722 - +1.2 4,228,734 - -2.5 4,228,781 + -2.0 4,228,781 + -0.7 4,228,781 + -1.5 4,228,782 - +0.5 4,228,782 - +2.5 4,228,782 - +0.5 4,228,782 - -0.4 4,228,782 - -2.6 4,228,785 - -0.8 4,228,785 - +4.2 4,228,785 - +0.0 4,228,785 - -0.8 4,228,791 + -1.7 4,228,919 + DDA3937_RS18505 0.15 -0.2 4,229,032 - DDA3937_RS18505 0.28 -1.1 4,229,041 + DDA3937_RS18505 0.29 -0.1 4,229,087 + DDA3937_RS18505 0.34 -1.2 4,229,088 - DDA3937_RS18505 0.34 -1.8 4,229,104 - DDA3937_RS18505 0.36 -2.2 4,229,104 - DDA3937_RS18505 0.36 +0.5 4,229,136 + DDA3937_RS18505 0.40 +1.8 4,229,136 + DDA3937_RS18505 0.40 -1.8 4,229,137 - DDA3937_RS18505 0.40 +1.7 4,229,137 - DDA3937_RS18505 0.40 -1.5 4,229,158 - DDA3937_RS18505 0.42 -1.3 4,229,436 + DDA3937_RS18505 0.74 -1.0 4,229,437 - DDA3937_RS18505 0.74 +0.5 4,229,526 + DDA3937_RS18505 0.84 +2.1 4,229,526 + DDA3937_RS18505 0.84 -1.2 4,229,526 + DDA3937_RS18505 0.84 -0.9 4,229,526 + DDA3937_RS18505 0.84 -0.1 4,229,526 + DDA3937_RS18505 0.84 -2.5 4,229,526 + DDA3937_RS18505 0.84 -1.5 4,229,526 + DDA3937_RS18505 0.84 -1.3 4,229,527 - DDA3937_RS18505 0.84 -0.8 4,229,527 - DDA3937_RS18505 0.84 -2.5 4,229,527 - DDA3937_RS18505 0.84 +0.1 4,229,588 + -0.6 4,229,588 + -1.8 4,229,601 + -2.6 4,229,601 + +1.0 4,229,601 + +0.1 4,229,602 - -2.3 4,229,602 - -1.9 4,229,602 - +0.1 4,229,602 - -2.6 4,229,602 - +0.8 4,229,602 - -0.1 4,229,650 + +0.5 4,229,650 + -0.6 4,229,650 + -1.9
Or see this region's nucleotide sequence