Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS17585

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,003,259	+				+0.5
4,003,259	+				-3.3
4,003,260	-				+2.0
4,003,260	-				-0.2
4,003,267	+				-2.6
4,003,268	-				+0.1
4,003,268	-				+1.8
4,003,288	-				+2.4
4,003,290	+				-2.1
4,003,290	+				-0.8
4,003,291	-				+0.2
4,003,291	-				-0.8
4,003,291	-				+0.4
4,003,291	-				-2.1
4,003,314	+				-1.0
4,003,314	+				-1.7
4,003,314	+				+0.1
4,003,315	-				-1.1
4,003,315	-				+1.2
4,003,315	-				+0.4
4,003,350	+				-0.4
4,003,380	+				-1.8
4,003,380	+				-0.1
4,003,381	-				+0.2
4,003,389	+				-1.9
4,003,415	+				-2.5
4,003,415	+				+1.5
4,003,415	+				-1.5
4,003,416	-				+0.3
4,003,416	-				+0.8
4,003,441	+				+1.5
4,003,493	+				-1.4
4,003,494	-				+0.9
4,003,508	-				-1.5
4,003,510	-				-3.1
4,003,530	-				-0.5
4,003,541	-				+0.2
4,003,541	-				-0.5
4,003,557	+				+2.6
4,003,577	+				+0.6
4,003,577	+				+0.8
4,003,577	+				-4.1
4,003,578	-				-1.7
4,003,578	-				+1.2
4,003,578	-				-1.1
4,003,578	-				+0.2
4,003,578	-				-0.7
4,003,578	-				-0.7
4,003,578	-				+0.7
4,003,605	+				-1.4
4,003,605	+				-3.0
4,003,605	+				+0.5
4,003,605	+				+0.6
4,003,606	-				+1.5
4,003,606	-				+0.0
4,003,606	-				+0.5
4,003,606	-				-3.1
4,003,606	-				+1.5
4,003,606	-				+0.3
4,003,649	-				-1.5
4,003,713	+				-1.5
4,003,714	-				-1.0
4,003,714	-				-0.3
4,003,736	+				+0.2
4,003,737	-				+2.5
4,003,737	-				+0.5
4,003,737	-				+3.4
4,003,745	+				-1.0
4,003,746	-				-1.0
4,003,746	-				-1.7
4,003,755	+				-0.9
4,003,756	-				-1.1
4,003,756	-				-3.7
4,003,756	-				+0.8
4,003,758	+				-0.0
4,003,759	-				-1.9
4,003,759	-				+2.2
4,003,759	-				-1.4
4,003,759	-				-0.6
4,003,889	+				-1.1
4,003,889	+				-1.4
4,003,889	+				-0.2
4,003,889	+				+2.1
4,003,890	-				+0.8
4,003,890	-				-0.6
4,004,027	-				-0.3
4,004,028	+				-3.7
4,004,028	+				-3.0
4,004,029	-				+1.8
4,004,052	+				-1.1
4,004,063	-				+0.3
4,004,088	+				-1.5
4,004,126	+				-1.9
4,004,146	-				-0.7
4,004,146	-				-3.0
4,004,146	-				-2.6
4,004,149	+				-2.4
4,004,150	-				+0.9
4,004,176	-				-1.1
4,004,221	+				+1.1
4,004,237	-				-0.8
4,004,286	-				-1.7
4,004,331	+				-2.1
4,004,331	+				-0.7
4,004,331	+				-0.4
4,004,332	-				+0.1
4,004,332	-				-3.2
4,004,332	-				-0.5
4,004,335	+				-2.7
4,004,336	-				-1.1
4,004,336	-				-2.4
4,004,385	+				-2.1
4,004,442	+		DDA3937_RS17585	0.12	+1.6
4,004,464	+		DDA3937_RS17585	0.14	+0.8
4,004,507	+		DDA3937_RS17585	0.16	-3.4
4,004,508	-		DDA3937_RS17585	0.16	-1.9
4,004,516	+		DDA3937_RS17585	0.17	+1.3
4,004,516	+		DDA3937_RS17585	0.17	-1.8
4,004,517	-		DDA3937_RS17585	0.17	-1.8
4,004,546	+		DDA3937_RS17585	0.19	-1.6
4,004,631	+		DDA3937_RS17585	0.24	-2.0
4,004,646	+		DDA3937_RS17585	0.25	-0.6
4,004,698	+		DDA3937_RS17585	0.28	-2.8
4,004,698	+		DDA3937_RS17585	0.28	-2.0
4,004,699	-		DDA3937_RS17585	0.28	-1.6
4,004,701	-		DDA3937_RS17585	0.28	-3.2
4,004,719	+		DDA3937_RS17585	0.29	+0.0
4,004,720	-		DDA3937_RS17585	0.29	-1.5
4,004,720	-		DDA3937_RS17585	0.29	+0.3
4,004,720	-		DDA3937_RS17585	0.29	-2.0
4,004,773	+		DDA3937_RS17585	0.33	+3.1
4,004,774	-		DDA3937_RS17585	0.33	+0.2
4,004,775	+		DDA3937_RS17585	0.33	+1.7
4,004,775	+		DDA3937_RS17585	0.33	-2.1
4,004,775	+		DDA3937_RS17585	0.33	+1.2
4,004,789	+		DDA3937_RS17585	0.34	+1.0
4,004,796	+		DDA3937_RS17585	0.34	+0.8
4,004,796	+		DDA3937_RS17585	0.34	-2.6
4,004,796	+		DDA3937_RS17585	0.34	-0.1
4,004,796	+		DDA3937_RS17585	0.34	+0.3
4,004,796	+		DDA3937_RS17585	0.34	+2.8
4,004,796	+		DDA3937_RS17585	0.34	+0.8
4,004,797	-		DDA3937_RS17585	0.34	-2.3
4,004,797	-		DDA3937_RS17585	0.34	-0.7
4,004,797	-		DDA3937_RS17585	0.34	-2.3
4,004,856	+		DDA3937_RS17585	0.38	+0.7
4,004,891	-		DDA3937_RS17585	0.40	+1.2
4,004,976	+		DDA3937_RS17585	0.45	+1.3
4,004,976	+		DDA3937_RS17585	0.45	+3.2
4,004,976	+		DDA3937_RS17585	0.45	-0.3
4,004,977	-		DDA3937_RS17585	0.45	-1.0
4,005,046	-		DDA3937_RS17585	0.50	-0.2
4,005,166	+		DDA3937_RS17585	0.57	+1.7
4,005,166	+		DDA3937_RS17585	0.57	-2.6
4,005,167	-		DDA3937_RS17585	0.57	-1.4
4,005,167	-		DDA3937_RS17585	0.57	-0.5
4,005,167	-		DDA3937_RS17585	0.57	+0.8
4,005,169	+		DDA3937_RS17585	0.57	-0.3
4,005,169	+		DDA3937_RS17585	0.57	-0.1
4,005,169	+		DDA3937_RS17585	0.57	-2.1
4,005,169	+		DDA3937_RS17585	0.57	-1.6
4,005,169	+		DDA3937_RS17585	0.57	-0.2
4,005,169	+		DDA3937_RS17585	0.57	+1.3
4,005,170	-		DDA3937_RS17585	0.57	+0.1
4,005,170	-		DDA3937_RS17585	0.57	-1.3
4,005,170	-		DDA3937_RS17585	0.57	-0.2
4,005,210	+		DDA3937_RS17585	0.60	+0.8
4,005,210	+		DDA3937_RS17585	0.60	-1.0
4,005,210	+		DDA3937_RS17585	0.60	-0.7
4,005,211	-		DDA3937_RS17585	0.60	-3.3
4,005,235	-		DDA3937_RS17585	0.61	+0.5
4,005,238	-		DDA3937_RS17585	0.62	-0.2
4,005,308	+		DDA3937_RS17585	0.66	-2.6
4,005,309	-		DDA3937_RS17585	0.66	-0.8
4,005,309	-		DDA3937_RS17585	0.66	-1.1
4,005,421	+		DDA3937_RS17585	0.73	-2.0
4,005,422	-		DDA3937_RS17585	0.73	-0.1
4,005,422	-		DDA3937_RS17585	0.73	+0.3
4,005,423	+		DDA3937_RS17585	0.73	-2.1
4,005,667	+		DDA3937_RS17585	0.88	-1.3
4,005,667	+		DDA3937_RS17585	0.88	-2.5
4,005,667	+		DDA3937_RS17585	0.88	+0.2
4,005,667	+		DDA3937_RS17585	0.88	-1.6
4,005,667	+		DDA3937_RS17585	0.88	-2.5
4,005,667	+		DDA3937_RS17585	0.88	-1.7
4,005,667	+		DDA3937_RS17585	0.88	-2.0
4,005,667	+		DDA3937_RS17585	0.88	+1.0
4,005,667	+		DDA3937_RS17585	0.88	+0.8
4,005,667	+		DDA3937_RS17585	0.88	-1.8
4,005,667	+		DDA3937_RS17585	0.88	-1.1
4,005,667	+		DDA3937_RS17585	0.88	+0.4
4,005,668	-		DDA3937_RS17585	0.88	-1.0
4,005,668	-		DDA3937_RS17585	0.88	+0.3
4,005,668	-		DDA3937_RS17585	0.88	-1.3
4,005,668	-		DDA3937_RS17585	0.88	-2.2
4,005,668	-		DDA3937_RS17585	0.88	-2.7
4,005,669	+		DDA3937_RS17585	0.88	-1.8
4,005,669	+		DDA3937_RS17585	0.88	-0.1
4,005,669	+		DDA3937_RS17585	0.88	-1.1
4,005,669	+		DDA3937_RS17585	0.88	-1.7
4,005,670	-		DDA3937_RS17585	0.88	-0.6
4,005,670	-		DDA3937_RS17585	0.88	-1.1
4,005,670	-		DDA3937_RS17585	0.88	+0.9
4,005,748	-				-0.2
4,005,779	-				+1.7
4,005,821	-				-3.0
4,005,834	+				+0.1
4,005,834	+				-0.5
4,005,834	+				-0.4
4,005,954	+				+1.5
4,005,962	+				+1.5
4,005,962	+				+2.0
4,005,963	-				-1.8
4,005,963	-				-0.7
4,005,963	-				-0.5
4,005,963	-				-2.7
4,005,963	-				+0.2
4,005,963	-				+3.1
4,005,997	-				-0.5
4,006,169	+				+0.9
4,006,170	-				+1.7
4,006,170	-				-1.7
4,006,195	+				-2.0
4,006,234	+				+0.5
4,006,235	-				+2.0
4,006,292	+				-1.1
4,006,293	-				+0.5
4,006,293	-				-2.7
4,006,334	+		DDA3937_RS21700	0.12	-1.4
4,006,337	+		DDA3937_RS21700	0.12	-0.8
4,006,338	-		DDA3937_RS21700	0.12	-2.8
4,006,338	-		DDA3937_RS21700	0.12	-2.3
4,006,387	+		DDA3937_RS21700	0.16	+0.2
4,006,388	-		DDA3937_RS21700	0.16	-0.6
4,006,404	+		DDA3937_RS21700	0.17	+0.3
4,006,404	+		DDA3937_RS21700	0.17	+0.7
4,006,404	+		DDA3937_RS21700	0.17	-1.3
4,006,405	-		DDA3937_RS21700	0.17	+1.9
4,006,406	+		DDA3937_RS21700	0.17	-1.7
4,006,421	+		DDA3937_RS21700	0.19	-1.0
4,006,422	-		DDA3937_RS21700	0.19	-0.9
4,006,442	+		DDA3937_RS21700	0.20	-0.7
4,006,442	+		DDA3937_RS21700	0.20	+1.4
4,006,442	+		DDA3937_RS21700	0.20	+1.0
4,006,443	-		DDA3937_RS21700	0.20	-2.0
4,006,443	-		DDA3937_RS21700	0.20	+0.0
4,006,443	-		DDA3937_RS21700	0.20	-1.7
4,006,443	-		DDA3937_RS21700	0.20	-2.0
4,006,526	+		DDA3937_RS21700	0.27	+1.5
4,006,526	+		DDA3937_RS21700	0.27	-1.3
4,006,526	+		DDA3937_RS21700	0.27	-2.2
4,006,527	-		DDA3937_RS21700	0.27	+0.9
4,006,528	+		DDA3937_RS21700	0.27	-0.5
4,006,528	+		DDA3937_RS21700	0.27	+1.7
4,006,528	+		DDA3937_RS21700	0.27	+0.0
4,006,529	-		DDA3937_RS21700	0.27	-0.2
4,006,569	-		DDA3937_RS21700	0.30	+0.2
4,006,569	-		DDA3937_RS21700	0.30	-0.0
4,006,569	-		DDA3937_RS21700	0.30	-3.0
4,006,571	-		DDA3937_RS21700	0.30	-1.7
4,006,571	-		DDA3937_RS21700	0.30	-2.6
4,006,617	+		DDA3937_RS21700	0.34	-1.1
4,006,618	-		DDA3937_RS21700	0.34	-0.8
4,006,623	+		DDA3937_RS21700	0.34	-1.8
4,006,623	+		DDA3937_RS21700	0.34	-0.1
4,006,624	-				-0.1
4,006,624	-		DDA3937_RS21700	0.34	-2.0
4,006,624	-		DDA3937_RS21700	0.34	-0.8
4,006,624	-		DDA3937_RS21700	0.34	-1.7
4,006,674	+		DDA3937_RS21700	0.38	-0.5
4,006,684	-		DDA3937_RS21700	0.39	-0.3
4,006,739	+		DDA3937_RS21700	0.43	+0.7
4,006,739	+		DDA3937_RS21700	0.43	+0.7
4,006,739	+		DDA3937_RS21700	0.43	-0.8
4,006,739	+		DDA3937_RS21700	0.43	-0.3
4,006,740	-		DDA3937_RS21700	0.43	+1.5
4,006,741	+		DDA3937_RS21700	0.43	+1.3
4,006,747	+		DDA3937_RS21700	0.44	-0.5
4,006,747	+		DDA3937_RS21700	0.44	-1.1
4,006,747	+		DDA3937_RS21700	0.44	+0.6
4,006,747	+		DDA3937_RS21700	0.44	-1.9
4,006,748	-		DDA3937_RS21700	0.44	-1.5
4,006,760	+		DDA3937_RS21700	0.45	+0.5
4,006,760	+		DDA3937_RS21700	0.45	-2.8
4,006,761	-		DDA3937_RS21700	0.45	+0.2
4,006,764	-		DDA3937_RS21700	0.45	-2.0
4,006,792	+		DDA3937_RS21700	0.47	+0.3
4,006,792	+		DDA3937_RS21700	0.47	-2.3
4,006,792	+		DDA3937_RS21700	0.47	-2.2
4,006,792	+		DDA3937_RS21700	0.47	-0.7
4,006,793	-		DDA3937_RS21700	0.48	+0.5
4,006,796	+		DDA3937_RS21700	0.48	-1.1
4,006,796	+		DDA3937_RS21700	0.48	-2.1
4,006,796	+		DDA3937_RS21700	0.48	-1.7
4,006,796	+		DDA3937_RS21700	0.48	-2.5
4,006,796	+		DDA3937_RS21700	0.48	-1.5
4,006,797	-		DDA3937_RS21700	0.48	-2.1
4,006,797	-		DDA3937_RS21700	0.48	+0.2
4,006,797	-		DDA3937_RS21700	0.48	-1.3
4,006,797	-		DDA3937_RS21700	0.48	-0.4
4,006,797	-		DDA3937_RS21700	0.48	+0.5
4,006,797	-		DDA3937_RS21700	0.48	+1.3
4,006,797	-		DDA3937_RS21700	0.48	-0.3
4,006,798	+		DDA3937_RS21700	0.48	-2.4
4,006,829	-		DDA3937_RS21700	0.50	-1.5
4,006,853	-		DDA3937_RS21700	0.52	+1.3