Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS17450

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,968,933	-		DDA3937_RS17440	0.89	+2.9
3,968,971	-				-0.2
3,969,061	-				-1.8
3,969,094	+				+1.0
3,969,114	-				-0.8
3,969,160	+		DDA3937_RS17445	0.14	-1.3
3,969,225	+		DDA3937_RS17445	0.22	-2.6
3,969,225	+		DDA3937_RS17445	0.22	-1.7
3,969,226	-				-0.5
3,969,226	-		DDA3937_RS17445	0.22	+0.2
3,969,232	+		DDA3937_RS17445	0.23	-0.1
3,969,232	+		DDA3937_RS17445	0.23	+0.2
3,969,238	-		DDA3937_RS17445	0.23	+0.4
3,969,238	-		DDA3937_RS17445	0.23	-1.2
3,969,238	-		DDA3937_RS17445	0.23	+0.8
3,969,238	-		DDA3937_RS17445	0.23	-0.2
3,969,426	+		DDA3937_RS17445	0.46	+0.2
3,969,427	-		DDA3937_RS17445	0.46	+1.5
3,969,427	-		DDA3937_RS17445	0.46	+0.2
3,969,430	+		DDA3937_RS17445	0.46	+0.8
3,969,431	-		DDA3937_RS17445	0.46	-0.1
3,969,432	+		DDA3937_RS17445	0.46	+0.3
3,969,432	+		DDA3937_RS17445	0.46	-1.4
3,969,432	+		DDA3937_RS17445	0.46	-0.2
3,969,432	+		DDA3937_RS17445	0.46	-0.6
3,969,432	+		DDA3937_RS17445	0.46	-2.7
3,969,432	+		DDA3937_RS17445	0.46	-0.2
3,969,433	-		DDA3937_RS17445	0.47	+0.5
3,969,433	-		DDA3937_RS17445	0.47	+0.1
3,969,433	-		DDA3937_RS17445	0.47	-1.3
3,969,433	-		DDA3937_RS17445	0.47	-1.6
3,969,433	-		DDA3937_RS17445	0.47	-3.2
3,969,433	-		DDA3937_RS17445	0.47	-1.8
3,969,459	+		DDA3937_RS17445	0.50	+0.5
3,969,459	+		DDA3937_RS17445	0.50	+0.7
3,969,460	-		DDA3937_RS17445	0.50	-0.7
3,969,467	-		DDA3937_RS17445	0.51	-0.5
3,969,508	+		DDA3937_RS17445	0.55	+1.5
3,969,508	+		DDA3937_RS17445	0.55	+1.3
3,969,509	-		DDA3937_RS17445	0.56	-1.0
3,969,509	-		DDA3937_RS17445	0.56	-1.5
3,969,578	-		DDA3937_RS17445	0.64	-0.1
3,969,578	-		DDA3937_RS17445	0.64	+0.0
3,969,816	-				+0.6
3,970,028	-		DDA3937_RS17450	0.18	+0.5
3,970,031	+		DDA3937_RS17450	0.18	-0.9
3,970,031	+		DDA3937_RS17450	0.18	-3.0
3,970,031	+		DDA3937_RS17450	0.18	+0.0
3,970,032	-		DDA3937_RS17450	0.18	-0.3
3,970,328	+		DDA3937_RS17450	0.54	-1.8
3,970,329	-		DDA3937_RS17450	0.54	-1.0
3,970,329	-		DDA3937_RS17450	0.54	-1.2
3,970,329	-		DDA3937_RS17450	0.54	+1.5
3,970,369	-		DDA3937_RS17450	0.59	-1.7
3,970,406	+		DDA3937_RS17450	0.64	+0.5
3,970,406	+		DDA3937_RS17450	0.64	+0.1
3,970,407	-		DDA3937_RS17450	0.64	-0.8
3,970,407	-		DDA3937_RS17450	0.64	-1.1
3,970,428	-		DDA3937_RS17450	0.66	-1.3
3,970,538	-		DDA3937_RS17450	0.80	-1.3
3,970,540	-		DDA3937_RS17450	0.80	-0.9
3,970,540	-		DDA3937_RS17450	0.80	-2.8
3,970,540	-		DDA3937_RS17450	0.80	-0.1
3,970,559	+		DDA3937_RS17450	0.82	-0.8
3,970,559	+		DDA3937_RS17450	0.82	+1.1
3,970,559	+		DDA3937_RS17450	0.82	-1.0
3,970,559	+		DDA3937_RS17450	0.82	-1.0
3,970,559	+		DDA3937_RS17450	0.82	-0.4
3,970,559	+		DDA3937_RS17450	0.82	+1.0
3,970,560	-		DDA3937_RS17450	0.82	+0.3
3,970,560	-		DDA3937_RS17450	0.82	-2.5
3,970,560	-		DDA3937_RS17450	0.82	-0.0
3,970,601	+		DDA3937_RS17450	0.87	-2.1
3,970,829	+				-1.7
3,970,829	+				-1.7
3,970,830	-				-0.9
3,970,830	-				+1.1
3,970,830	-				+2.1
3,970,830	-				-0.8
3,970,946	+		DDA3937_RS17455	0.21	+0.3
3,970,947	-		DDA3937_RS17455	0.21	-2.7
3,970,985	+		DDA3937_RS17455	0.25	+1.0
3,970,985	+		DDA3937_RS17455	0.25	-0.8
3,970,985	+		DDA3937_RS17455	0.25	-1.2
3,970,986	-		DDA3937_RS17455	0.25	-0.1
3,970,986	-		DDA3937_RS17455	0.25	-1.1
3,971,041	+		DDA3937_RS17455	0.30	-2.5
3,971,041	+		DDA3937_RS17455	0.30	-1.3
3,971,042	-		DDA3937_RS17455	0.30	+0.7
3,971,042	-		DDA3937_RS17455	0.30	-0.1
3,971,042	-		DDA3937_RS17455	0.30	+0.9
3,971,042	-		DDA3937_RS17455	0.30	+2.2
3,971,042	-		DDA3937_RS17455	0.30	-3.0
3,971,042	-		DDA3937_RS17455	0.30	-1.5
3,971,098	+		DDA3937_RS17455	0.35	+0.2
3,971,098	+		DDA3937_RS17455	0.35	-0.1
3,971,300	+		DDA3937_RS17455	0.55	+1.0
3,971,300	+		DDA3937_RS17455	0.55	-1.1
3,971,300	+		DDA3937_RS17455	0.55	-1.1
3,971,300	+		DDA3937_RS17455	0.55	-3.4
3,971,300	+		DDA3937_RS17455	0.55	+0.8
3,971,301	-		DDA3937_RS17455	0.55	-0.8
3,971,301	-		DDA3937_RS17455	0.55	-0.5
3,971,301	-		DDA3937_RS17455	0.55	-2.8
3,971,301	-		DDA3937_RS17455	0.55	+1.4
3,971,301	-		DDA3937_RS17455	0.55	-0.8
3,971,301	-		DDA3937_RS17455	0.55	-0.7
3,971,301	-		DDA3937_RS17455	0.55	+0.3
3,971,301	-		DDA3937_RS17455	0.55	+1.3
3,971,301	-		DDA3937_RS17455	0.55	+0.1
3,971,328	+		DDA3937_RS17455	0.57	-1.1
3,971,329	-		DDA3937_RS17455	0.57	-0.8
3,971,329	-		DDA3937_RS17455	0.57	-0.5
3,971,344	+		DDA3937_RS17455	0.59	+2.4
3,971,344	+		DDA3937_RS17455	0.59	-2.4
3,971,344	+		DDA3937_RS17455	0.59	-0.7
3,971,344	+		DDA3937_RS17455	0.59	+2.1
3,971,345	-		DDA3937_RS17455	0.59	-1.4
3,971,384	+		DDA3937_RS17455	0.62	+0.9
3,971,453	+		DDA3937_RS17455	0.69	+1.2
3,971,454	-		DDA3937_RS17455	0.69	-0.5
3,971,454	-		DDA3937_RS17455	0.69	-0.0
3,971,600	+		DDA3937_RS17455	0.83	+2.2
3,971,601	-		DDA3937_RS17455	0.83	-0.5
3,971,625	+		DDA3937_RS17455	0.85	-0.2
3,971,625	+		DDA3937_RS17455	0.85	+0.4
3,971,626	-		DDA3937_RS17455	0.85	+1.0
3,971,626	-		DDA3937_RS17455	0.85	-0.1
3,971,626	-		DDA3937_RS17455	0.85	-0.8
3,971,626	-		DDA3937_RS17455	0.85	-0.7
3,971,668	-		DDA3937_RS17455	0.89	-0.0