Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS17370

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,952,816	-		DDA3937_RS17365	0.47	-2.1
3,952,892	+		DDA3937_RS17365	0.56	+1.1
3,952,892	+		DDA3937_RS17365	0.56	-0.5
3,952,892	+		DDA3937_RS17365	0.56	-2.5
3,952,904	+		DDA3937_RS17365	0.57	+3.0
3,952,904	+		DDA3937_RS17365	0.57	+1.1
3,952,905	-		DDA3937_RS17365	0.57	-1.5
3,952,905	-		DDA3937_RS17365	0.57	-1.7
3,952,966	+		DDA3937_RS17365	0.64	-1.1
3,952,967	-		DDA3937_RS17365	0.64	+0.5
3,953,001	-		DDA3937_RS17365	0.68	-1.1
3,953,001	-		DDA3937_RS17365	0.68	+0.3
3,953,001	-		DDA3937_RS17365	0.68	-2.3
3,953,001	-		DDA3937_RS17365	0.68	+1.5
3,953,027	-		DDA3937_RS17365	0.71	-1.4
3,953,103	+		DDA3937_RS17365	0.80	-0.9
3,953,214	+				+0.1
3,953,214	+				+0.6
3,953,214	+				-0.9
3,953,253	+				-1.5
3,953,253	+				+0.8
3,953,253	+				-1.2
3,953,253	+				+1.1
3,953,253	+				-1.5
3,953,254	-				-0.3
3,953,256	+				-1.5
3,953,256	+				-1.1
3,953,256	+				-0.1
3,953,272	+				+1.2
3,953,319	+				-1.6
3,953,364	+				+1.8
3,953,365	-				+2.0
3,953,365	-				-2.4
3,953,395	+				-3.1
3,953,413	+				+1.7
3,953,414	-				-3.6
3,953,414	-				+0.0
3,953,414	-				+0.8
3,953,472	-				-1.3
3,953,527	+				-1.1
3,953,527	+				-3.9
3,953,528	-				+1.1
3,953,539	+				-0.1
3,953,539	+				-2.7
3,953,540	-				-0.7
3,953,540	-				-1.7
3,953,598	+				-2.4
3,953,599	-				+0.2
3,953,599	-				-0.5
3,953,599	-				-1.7
3,953,615	-				+0.8
3,953,619	+				+1.1
3,953,642	+				-0.4
3,953,685	+				-1.1
3,953,686	-				-2.2
3,953,708	+				-1.5
3,953,708	+				-0.1
3,953,708	+				+0.1
3,953,709	-				-2.2
3,953,709	-				-1.5
3,953,753	-				-2.3
3,953,806	+				-0.1
3,953,806	+				-0.9
3,953,806	+				-2.0
3,953,807	-				-0.5
3,953,807	-				+0.8
3,953,807	-				-0.8
3,953,808	+				+1.9
3,953,809	-				-0.7
3,953,809	-				-1.9
3,953,809	-				+0.6
3,953,863	+				-0.1
3,953,863	+				-3.4
3,953,864	-				-0.4
3,953,864	-				-1.3
3,953,864	-				+0.9
3,953,864	-				+0.7
3,953,864	-				+0.6
3,953,864	-				-0.5
3,953,866	+				-2.6
3,953,876	+				-2.6
3,953,876	+				-1.0
3,953,877	-				-0.5
3,953,877	-				-1.7
3,953,917	+		DDA3937_RS17370	0.12	-1.7
3,953,917	+		DDA3937_RS17370	0.12	-1.6
3,953,917	+		DDA3937_RS17370	0.12	+0.7
3,953,917	+		DDA3937_RS17370	0.12	-0.3
3,953,918	-		DDA3937_RS17370	0.13	-2.4
3,953,918	-		DDA3937_RS17370	0.13	-2.2
3,953,923	+		DDA3937_RS17370	0.13	-0.1
3,953,923	+		DDA3937_RS17370	0.13	-1.5
3,953,923	+		DDA3937_RS17370	0.13	-0.7
3,953,923	+		DDA3937_RS17370	0.13	-1.3
3,953,924	-		DDA3937_RS17370	0.13	+0.1
3,954,109	+		DDA3937_RS17370	0.34	-0.5
3,954,110	-		DDA3937_RS17370	0.34	-4.0
3,954,110	-		DDA3937_RS17370	0.34	-2.9
3,954,110	-		DDA3937_RS17370	0.34	+1.3
3,954,110	-		DDA3937_RS17370	0.34	-0.1
3,954,110	-		DDA3937_RS17370	0.34	-0.5
3,954,151	+		DDA3937_RS17370	0.38	+0.2
3,954,152	-		DDA3937_RS17370	0.38	+1.1
3,954,174	-		DDA3937_RS17370	0.41	+1.5
3,954,232	+		DDA3937_RS17370	0.47	-2.6
3,954,233	-		DDA3937_RS17370	0.47	+0.7
3,954,326	+		DDA3937_RS17370	0.58	+0.2
3,954,367	+		DDA3937_RS17370	0.62	-2.5
3,954,368	-		DDA3937_RS17370	0.62	+1.4
3,954,380	-		DDA3937_RS17370	0.64	-0.3
3,954,430	+		DDA3937_RS17370	0.69	-0.9
3,954,431	-		DDA3937_RS17370	0.69	+0.0
3,954,431	-		DDA3937_RS17370	0.69	+0.8
3,954,545	-		DDA3937_RS17370	0.82	-0.2
3,954,545	-		DDA3937_RS17370	0.82	+1.1
3,954,574	+		DDA3937_RS17370	0.85	-0.7
3,954,574	+		DDA3937_RS17370	0.85	-2.9
3,954,574	+		DDA3937_RS17370	0.85	+0.3
3,954,575	-		DDA3937_RS17370	0.85	-0.8
3,954,575	-		DDA3937_RS17370	0.85	-1.7
3,954,575	-		DDA3937_RS17370	0.85	-0.9
3,954,578	+		DDA3937_RS17370	0.86	+0.1
3,954,578	+		DDA3937_RS17370	0.86	-1.2
3,954,578	+		DDA3937_RS17370	0.86	-3.0
3,954,578	+		DDA3937_RS17370	0.86	-1.1
3,954,578	+		DDA3937_RS17370	0.86	-2.7
3,954,578	+		DDA3937_RS17370	0.86	-1.0
3,954,579	-		DDA3937_RS17370	0.86	-0.2
3,954,579	-		DDA3937_RS17370	0.86	+0.5
3,954,579	-		DDA3937_RS17370	0.86	-3.0
3,954,636	-				-1.3
3,954,638	-				-0.6
3,954,664	+				-0.5
3,954,665	-				-0.8
3,954,665	-				+1.2
3,954,680	+				+2.1
3,954,700	+				-0.1
3,954,700	+				+0.8
3,954,700	+				-1.7
3,954,700	+				-2.1
3,954,700	+				+0.8
3,954,701	-				-1.7
3,954,701	-				-0.1
3,954,701	-				+2.3
3,954,701	-				+0.5
3,954,701	-				-1.0
3,954,747	+				+0.7
3,954,747	+				-0.4
3,954,747	+				-1.3
3,954,747	+				-0.2
3,954,748	-				-1.2
3,954,748	-				+1.0
3,954,748	-				+0.5
3,954,748	-				-0.3
3,954,748	-				+0.2
3,954,749	+				-2.1
3,954,749	+				-0.1
3,954,749	+				+2.6
3,954,749	+				-0.1
3,954,749	+				-3.8
3,954,749	+				+1.5
3,954,749	+				+0.1
3,954,750	-				+1.1
3,954,750	-				-0.9
3,954,750	-				-2.2
3,954,750	-				+0.2
3,954,751	+				-0.6
3,954,751	+				-2.0
3,954,751	+				-0.6
3,954,752	-				-0.1
3,954,752	-				-1.0
3,954,752	-				-0.1
3,954,752	-				-0.1
3,954,752	-				-0.6
3,954,752	-				-0.5
3,954,777	+				-1.2
3,954,778	-				+1.7
3,954,844	+				-1.9
3,954,844	+				-1.9
3,954,845	-				-0.7
3,954,845	-				-2.4
3,954,845	-				-1.3
3,954,845	-				-0.5
3,954,858	+				-1.7
3,954,858	+				-2.3
3,954,859	-				-0.7
3,954,862	+				-2.0
3,954,862	+				-2.3
3,954,876	-				-0.2
3,954,894	-				+1.4
3,954,894	-				+0.4
3,954,894	-				+2.9
3,954,894	-				-1.1
3,954,894	-				-2.2
3,954,999	+				-2.4
3,954,999	+				+0.5
3,955,007	+				-1.9
3,955,136	+				-0.5
3,955,136	+				-3.1
3,955,136	+				+0.7
3,955,136	+				-1.6
3,955,136	+				-2.3
3,955,137	-				-1.2
3,955,137	-				-0.5
3,955,137	-				+0.9
3,955,137	-				-1.9
3,955,137	-				-1.2
3,955,137	-				-2.7
3,955,142	+				-0.0
3,955,142	+				-1.9
3,955,142	+				+1.9
3,955,143	-				+0.5
3,955,143	-				-1.7
3,955,143	-				-1.1
3,955,143	-				+1.2
3,955,143	-				-1.5
3,955,143	-				+0.8
3,955,143	-				-2.1
3,955,143	-				+1.4
3,955,145	+				+0.8
3,955,145	+				-2.7
3,955,145	+				-2.0
3,955,146	-				+0.5
3,955,146	-				-2.9
3,955,146	-				+0.9
3,955,146	-				-0.4
3,955,146	-				+1.5
3,955,146	-				+1.4
3,955,146	-				+0.1
3,955,146	-				-2.2
3,955,146	-				-1.5
3,955,213	+				+0.6
3,955,214	-				-0.3
3,955,245	+				-0.3
3,955,343	+		DDA3937_RS17375	0.11	-0.5
3,955,343	+		DDA3937_RS17375	0.11	+2.3
3,955,343	+		DDA3937_RS17375	0.11	+0.2
3,955,344	-		DDA3937_RS17375	0.11	+1.7
3,955,344	-		DDA3937_RS17375	0.11	+0.5
3,955,344	-		DDA3937_RS17375	0.11	+0.9
3,955,344	-		DDA3937_RS17375	0.11	-1.8
3,955,366	+		DDA3937_RS17375	0.13	+1.2
3,955,430	+		DDA3937_RS17375	0.19	-1.0
3,955,430	+		DDA3937_RS17375	0.19	-0.9
3,955,525	+		DDA3937_RS17375	0.29	+2.6