Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16015

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,660,295	-				-0.5
3,660,307	-				-2.3
3,660,344	+				+0.6
3,660,344	+				-1.4
3,660,344	+				-2.0
3,660,344	+				-1.5
3,660,344	+				-1.8
3,660,344	+				+0.5
3,660,344	+				+0.8
3,660,344	+				-0.2
3,660,344	+				+0.7
3,660,344	+				-0.5
3,660,344	+				+1.8
3,660,344	+				+0.9
3,660,344	+				-0.6
3,660,345	-				-2.0
3,660,345	-				-2.4
3,660,345	-				-2.1
3,660,348	+				+0.3
3,660,348	+				-1.5
3,660,348	+				-0.4
3,660,348	+				-0.7
3,660,348	+				-0.1
3,660,348	+				-1.5
3,660,348	+				+0.5
3,660,349	-				-3.0
3,660,349	-				+1.7
3,660,349	-				-1.5
3,660,353	+				-4.1
3,660,394	+				+0.6
3,660,394	+				+1.9
3,660,394	+				-0.7
3,660,395	-				+1.3
3,660,395	-				+1.9
3,660,419	+				-1.1
3,660,473	+				-2.7
3,660,474	-				+1.0
3,660,474	-				+3.9
3,660,474	-				+0.3
3,660,474	-				+1.5
3,660,474	-				+0.5
3,660,536	-				+0.5
3,660,552	+		DDA3937_RS16010	0.18	-2.0
3,660,553	-		DDA3937_RS16010	0.18	-1.9
3,660,584	+		DDA3937_RS16010	0.22	+1.8
3,660,585	-				+1.5
3,660,694	+		DDA3937_RS16010	0.34	+0.1
3,660,694	+		DDA3937_RS16010	0.34	-1.0
3,660,699	+		DDA3937_RS16010	0.35	-0.5
3,660,699	+		DDA3937_RS16010	0.35	-1.1
3,660,699	+		DDA3937_RS16010	0.35	-2.5
3,660,699	+		DDA3937_RS16010	0.35	-1.9
3,660,699	+		DDA3937_RS16010	0.35	+1.8
3,660,699	+		DDA3937_RS16010	0.35	-1.1
3,660,699	+		DDA3937_RS16010	0.35	-2.9
3,660,699	+		DDA3937_RS16010	0.35	+2.9
3,660,700	-		DDA3937_RS16010	0.35	+2.1
3,660,700	-		DDA3937_RS16010	0.35	-1.9
3,660,700	-		DDA3937_RS16010	0.35	+2.0
3,660,700	-		DDA3937_RS16010	0.35	-1.5
3,660,700	-		DDA3937_RS16010	0.35	-1.4
3,660,700	-		DDA3937_RS16010	0.35	+0.6
3,660,700	-		DDA3937_RS16010	0.35	-1.5
3,660,700	-		DDA3937_RS16010	0.35	+2.6
3,660,700	-		DDA3937_RS16010	0.35	+1.4
3,660,700	-		DDA3937_RS16010	0.35	+2.5
3,660,700	-		DDA3937_RS16010	0.35	-2.9
3,660,700	-		DDA3937_RS16010	0.35	-1.7
3,660,700	-		DDA3937_RS16010	0.35	-1.5
3,660,756	-		DDA3937_RS16010	0.41	-1.0
3,660,823	+		DDA3937_RS16010	0.49	+2.5
3,660,824	-		DDA3937_RS16010	0.49	-1.5
3,660,907	+		DDA3937_RS16010	0.59	+1.6
3,660,955	+		DDA3937_RS16010	0.64	-2.0
3,661,009	+		DDA3937_RS16010	0.71	+0.5
3,661,031	+				+0.5
3,661,032	-		DDA3937_RS16010	0.73	-1.5
3,661,073	+		DDA3937_RS16010	0.78	-0.1
3,661,074	-		DDA3937_RS16010	0.78	-1.5
3,661,074	-		DDA3937_RS16010	0.78	-1.5
3,661,076	+		DDA3937_RS16010	0.78	-2.0
3,661,126	+		DDA3937_RS16010	0.84	+0.6
3,661,127	-		DDA3937_RS16010	0.84	-0.5
3,661,141	+		DDA3937_RS16010	0.86	-3.4
3,661,142	-		DDA3937_RS16010	0.86	-2.5
3,661,185	-				+0.1
3,661,187	+				+1.5
3,661,187	+				-0.9
3,661,188	-				+0.3
3,661,275	+				-2.4
3,661,288	+				-1.1
3,661,308	+				-0.4
3,661,309	-				-0.4
3,661,309	-				+2.4
3,661,348	+				-3.0
3,661,349	-				-1.6
3,661,352	+				-1.1
3,661,352	+				-0.1
3,661,352	+				-0.4
3,661,352	+				+2.2
3,661,352	+				+0.2
3,661,352	+				+1.1
3,661,352	+				-2.4
3,661,353	-				-0.9
3,661,353	-				-0.7
3,661,353	-				-0.5
3,661,353	-				+1.2
3,661,353	-				-0.1
3,661,353	-				-0.5
3,661,358	-				+2.5
3,661,364	+				+2.6
3,661,394	+		DDA3937_RS16015	0.13	+1.4
3,661,394	+		DDA3937_RS16015	0.13	-1.7
3,661,394	+		DDA3937_RS16015	0.13	-1.5
3,661,394	+		DDA3937_RS16015	0.13	-2.4
3,661,395	-		DDA3937_RS16015	0.13	+0.0
3,661,395	-		DDA3937_RS16015	0.13	-1.4
3,661,395	-		DDA3937_RS16015	0.13	+3.1
3,661,395	-		DDA3937_RS16015	0.13	-3.1
3,661,403	+		DDA3937_RS16015	0.14	+2.5
3,661,418	+		DDA3937_RS16015	0.16	-2.2
3,661,418	+		DDA3937_RS16015	0.16	-0.5
3,661,418	+		DDA3937_RS16015	0.16	+3.3
3,661,418	+		DDA3937_RS16015	0.16	-0.0
3,661,418	+		DDA3937_RS16015	0.16	-1.1
3,661,419	-		DDA3937_RS16015	0.16	+1.1
3,661,419	-		DDA3937_RS16015	0.16	+0.5
3,661,419	-		DDA3937_RS16015	0.16	+1.8
3,661,419	-		DDA3937_RS16015	0.16	-0.1
3,661,487	-		DDA3937_RS16015	0.25	-1.5
3,661,570	+		DDA3937_RS16015	0.35	+2.2
3,661,571	-		DDA3937_RS16015	0.35	+1.9
3,661,630	+		DDA3937_RS16015	0.43	-1.5
3,661,630	+		DDA3937_RS16015	0.43	+0.4
3,661,630	+		DDA3937_RS16015	0.43	-1.4
3,661,631	-		DDA3937_RS16015	0.43	+0.6
3,661,631	-		DDA3937_RS16015	0.43	-3.4
3,661,647	-		DDA3937_RS16015	0.45	-1.7
3,661,678	+		DDA3937_RS16015	0.49	-1.4
3,661,678	+		DDA3937_RS16015	0.49	-0.7
3,661,678	+		DDA3937_RS16015	0.49	-0.2
3,661,679	-		DDA3937_RS16015	0.49	+1.5
3,661,679	-		DDA3937_RS16015	0.49	+1.8
3,661,679	-		DDA3937_RS16015	0.49	-0.8
3,661,701	+		DDA3937_RS16015	0.51	-1.9
3,661,702	-		DDA3937_RS16015	0.52	-0.9
3,661,705	+		DDA3937_RS16015	0.52	-1.1
3,661,705	+		DDA3937_RS16015	0.52	+1.1
3,661,705	+		DDA3937_RS16015	0.52	-0.9
3,661,705	+		DDA3937_RS16015	0.52	-1.2
3,661,705	+		DDA3937_RS16015	0.52	-3.1
3,661,706	-		DDA3937_RS16015	0.52	-2.0
3,661,706	-		DDA3937_RS16015	0.52	-0.1
3,661,742	+		DDA3937_RS16015	0.57	-1.7
3,661,742	+		DDA3937_RS16015	0.57	-0.6
3,661,742	+		DDA3937_RS16015	0.57	+1.7
3,661,743	-		DDA3937_RS16015	0.57	-1.2
3,661,784	+		DDA3937_RS16015	0.62	-2.5
3,661,890	-		DDA3937_RS16015	0.75	-1.1
3,661,970	+		DDA3937_RS16015	0.85	-2.1
3,661,970	+		DDA3937_RS16015	0.85	-1.4
3,661,970	+		DDA3937_RS16015	0.85	+1.3
3,661,971	-		DDA3937_RS16015	0.85	+0.6
3,661,971	-		DDA3937_RS16015	0.85	+2.9
3,662,020	+				-1.4
3,662,021	-				-0.1
3,662,021	-				+0.2
3,662,021	-				-1.1
3,662,037	-				+1.5
3,662,058	-				-1.1
3,662,058	-				+0.2
3,662,166	-				-1.4
3,662,168	-				+0.2
3,662,169	+				-2.9
3,662,169	+				-0.9
3,662,170	-				+1.2
3,662,183	+				+0.5
3,662,198	+				-1.4
3,662,199	-				+0.6
3,662,199	-				-4.2
3,662,199	-				+2.1
3,662,199	-				-3.0
3,662,202	+				-2.4
3,662,203	-				-2.1
3,662,205	+				+0.5
3,662,205	+				-0.6
3,662,241	+				-1.7
3,662,242	-				-0.7
3,662,259	-				-0.5
3,662,277	+				-0.9
3,662,307	+				-0.5
3,662,307	+				+0.7
3,662,307	+				+0.2
3,662,308	-				+2.1
3,662,310	+				-0.0
3,662,311	-				-1.3
3,662,311	-				+0.4
3,662,317	+				-1.1
3,662,317	+				-0.3
3,662,367	+		DDA3937_RS16020	0.28	+0.5
3,662,371	+		DDA3937_RS16020	0.29	-0.9
3,662,371	+		DDA3937_RS16020	0.29	-3.2
3,662,371	+		DDA3937_RS16020	0.29	-2.5
3,662,371	+		DDA3937_RS16020	0.29	-2.3
3,662,371	+		DDA3937_RS16020	0.29	-2.0
3,662,371	+		DDA3937_RS16020	0.29	-2.5
3,662,371	+		DDA3937_RS16020	0.29	-1.1
3,662,372	-		DDA3937_RS16020	0.30	+1.2
3,662,372	-		DDA3937_RS16020	0.30	-1.1
3,662,372	-		DDA3937_RS16020	0.30	+1.2
3,662,372	-		DDA3937_RS16020	0.30	+2.5
3,662,398	-		DDA3937_RS16020	0.41	-1.6
3,662,539	+				+0.7
3,662,540	-				+3.0
3,662,540	-				+0.2
3,662,561	+				-2.5
3,662,561	+				+0.9
3,662,561	+				-3.6
3,662,562	-				+0.7
3,662,562	-				+0.9
3,662,614	-		DDA3937_RS16025	0.17	+2.0
3,662,672	+		DDA3937_RS16025	0.31	+3.0
3,662,672	+		DDA3937_RS16025	0.31	-2.9
3,662,910	+		DDA3937_RS16025	0.89	-2.6
3,662,910	+		DDA3937_RS16025	0.89	+1.2
3,662,910	+		DDA3937_RS16025	0.89	-0.1
3,662,910	+		DDA3937_RS16025	0.89	-0.5
3,662,910	+		DDA3937_RS16025	0.89	+0.3
3,662,911	-		DDA3937_RS16025	0.89	-2.3
3,662,938	-				+0.2
3,662,938	-				-1.7
3,662,981	-				-0.6
3,663,010	+				+1.4
3,663,010	+				+0.4
3,663,010	+				+1.0
3,663,010	+				+0.6
3,663,011	-				-1.6
3,663,011	-				+0.9
3,663,011	-				-3.2