Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15845

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,621,859	-				-1.4
3,621,884	-				-0.1
3,622,011	+		DDA3937_RS15840	0.16	-0.5
3,622,011	+		DDA3937_RS15840	0.16	-0.9
3,622,011	+		DDA3937_RS15840	0.16	+2.0
3,622,011	+		DDA3937_RS15840	0.16	+0.1
3,622,011	+		DDA3937_RS15840	0.16	-2.4
3,622,011	+		DDA3937_RS15840	0.16	-0.9
3,622,011	+		DDA3937_RS15840	0.16	-0.9
3,622,012	-		DDA3937_RS15840	0.16	+0.6
3,622,012	-		DDA3937_RS15840	0.16	+0.4
3,622,012	-		DDA3937_RS15840	0.16	+0.4
3,622,048	+		DDA3937_RS15840	0.20	-0.1
3,622,066	+		DDA3937_RS15840	0.22	-0.9
3,622,066	+		DDA3937_RS15840	0.22	-0.9
3,622,067	-		DDA3937_RS15840	0.22	+0.6
3,622,135	-		DDA3937_RS15840	0.30	+0.3
3,622,269	+		DDA3937_RS15840	0.45	-1.6
3,622,269	+		DDA3937_RS15840	0.45	-2.9
3,622,269	+		DDA3937_RS15840	0.45	-1.6
3,622,270	-		DDA3937_RS15840	0.45	-2.6
3,622,270	-		DDA3937_RS15840	0.45	-1.4
3,622,270	-		DDA3937_RS15840	0.45	-2.9
3,622,271	-		DDA3937_RS15840	0.45	-3.2
3,622,317	+		DDA3937_RS15840	0.50	-2.5
3,622,317	+		DDA3937_RS15840	0.50	+0.0
3,622,317	+		DDA3937_RS15840	0.50	-0.9
3,622,318	-				+2.0
3,622,333	+		DDA3937_RS15840	0.52	+0.0
3,622,333	+		DDA3937_RS15840	0.52	-1.8
3,622,333	+		DDA3937_RS15840	0.52	-0.4
3,622,333	+		DDA3937_RS15840	0.52	-0.1
3,622,333	+				-0.1
3,622,333	+		DDA3937_RS15840	0.52	-0.9
3,622,333	+		DDA3937_RS15840	0.52	+0.9
3,622,334	-				-0.1
3,622,334	-		DDA3937_RS15840	0.52	-0.5
3,622,334	-		DDA3937_RS15840	0.52	-0.7
3,622,334	-		DDA3937_RS15840	0.52	-1.6
3,622,354	-		DDA3937_RS15840	0.54	-1.9
3,622,354	-		DDA3937_RS15840	0.54	-2.7
3,622,386	+		DDA3937_RS15840	0.58	+1.1
3,622,386	+		DDA3937_RS15840	0.58	-2.0
3,622,386	+		DDA3937_RS15840	0.58	+0.1
3,622,386	+		DDA3937_RS15840	0.58	-2.4
3,622,386	+		DDA3937_RS15840	0.58	-0.1
3,622,386	+		DDA3937_RS15840	0.58	+1.0
3,622,386	+		DDA3937_RS15840	0.58	-0.6
3,622,386	+		DDA3937_RS15840	0.58	-3.6
3,622,386	+		DDA3937_RS15840	0.58	-2.8
3,622,386	+		DDA3937_RS15840	0.58	-2.0
3,622,386	+		DDA3937_RS15840	0.58	-0.6
3,622,386	+		DDA3937_RS15840	0.58	-1.7
3,622,386	+		DDA3937_RS15840	0.58	-2.5
3,622,386	+		DDA3937_RS15840	0.58	-4.0
3,622,386	+		DDA3937_RS15840	0.58	-2.8
3,622,386	+		DDA3937_RS15840	0.58	-1.0
3,622,386	+		DDA3937_RS15840	0.58	-1.1
3,622,386	+				+0.9
3,622,387	-		DDA3937_RS15840	0.58	-2.6
3,622,387	-		DDA3937_RS15840	0.58	-2.9
3,622,387	-		DDA3937_RS15840	0.58	+0.6
3,622,387	-		DDA3937_RS15840	0.58	-2.3
3,622,387	-		DDA3937_RS15840	0.58	+0.1
3,622,387	-		DDA3937_RS15840	0.58	-1.9
3,622,387	-		DDA3937_RS15840	0.58	-0.1
3,622,387	-				-0.1
3,622,387	-				-0.1
3,622,387	-		DDA3937_RS15840	0.58	+0.8
3,622,387	-		DDA3937_RS15840	0.58	-0.4
3,622,387	-		DDA3937_RS15840	0.58	-1.4
3,622,443	-		DDA3937_RS15840	0.65	-1.9
3,622,502	+		DDA3937_RS15840	0.71	+0.4
3,622,508	-		DDA3937_RS15840	0.72	+0.9
3,622,601	-		DDA3937_RS15840	0.82	-0.5
3,622,689	+				+0.7
3,622,689	+				+0.4
3,622,689	+				-1.7
3,622,689	+				-1.2
3,622,690	-				-1.8
3,622,690	-				+2.7
3,622,690	-				-2.4
3,622,690	-				-2.6
3,622,690	-				-3.2
3,622,690	-				-1.4
3,622,744	+				-2.3
3,622,745	-				+0.8
3,622,767	+				-3.1
3,622,768	-				-2.3
3,622,768	-				+0.7
3,622,768	-				-0.1
3,622,769	+				-0.3
3,622,769	+				-1.4
3,622,769	+				-0.1
3,622,769	+				+1.7
3,622,770	-				+0.1
3,622,770	-				-3.1
3,622,783	+				+1.1
3,622,783	+				-1.6
3,622,783	+				+0.5
3,622,784	-				+0.6
3,622,784	-				-2.4
3,622,784	-				-0.5
3,622,866	+		DDA3937_RS15845	0.12	-1.7
3,622,866	+		DDA3937_RS15845	0.12	-2.9
3,622,866	+		DDA3937_RS15845	0.12	-1.4
3,622,867	-		DDA3937_RS15845	0.12	+0.0
3,622,867	-		DDA3937_RS15845	0.12	-3.3
3,622,872	+		DDA3937_RS15845	0.13	+0.5
3,622,956	+		DDA3937_RS15845	0.23	-1.9
3,623,178	+		DDA3937_RS15845	0.51	-2.0
3,623,178	+		DDA3937_RS15845	0.51	+0.2
3,623,226	+		DDA3937_RS15845	0.57	+0.6
3,623,227	-		DDA3937_RS15845	0.57	-1.9
3,623,317	+		DDA3937_RS15845	0.68	-0.2
3,623,317	+		DDA3937_RS15845	0.68	-0.8
3,623,317	+		DDA3937_RS15845	0.68	+0.4
3,623,317	+		DDA3937_RS15845	0.68	-1.0
3,623,317	+		DDA3937_RS15845	0.68	-2.9
3,623,317	+		DDA3937_RS15845	0.68	+0.1
3,623,318	-		DDA3937_RS15845	0.68	-1.0
3,623,318	-		DDA3937_RS15845	0.68	-0.9
3,623,318	-		DDA3937_RS15845	0.68	+0.4
3,623,318	-		DDA3937_RS15845	0.68	-0.5
3,623,318	-		DDA3937_RS15845	0.68	-0.3
3,623,319	+		DDA3937_RS15845	0.68	-0.8
3,623,320	-		DDA3937_RS15845	0.68	+0.5
3,623,320	-		DDA3937_RS15845	0.68	-1.1
3,623,320	-		DDA3937_RS15845	0.68	+0.9
3,623,396	+		DDA3937_RS15845	0.77	+1.1
3,623,396	+		DDA3937_RS15845	0.77	-2.1
3,623,414	+		DDA3937_RS15845	0.80	-0.2
3,623,414	+		DDA3937_RS15845	0.80	-3.5
3,623,428	+		DDA3937_RS15845	0.81	-1.5
3,623,470	-		DDA3937_RS15845	0.87	-1.1
3,623,514	+				-2.0
3,623,514	+				-1.5
3,623,514	+				-1.9
3,623,514	+				+0.6
3,623,515	-				-2.4
3,623,518	+				+1.8
3,623,518	+				-0.4
3,623,518	+				+1.9
3,623,518	+				-0.9
3,623,518	+				-0.1
3,623,518	+				-1.7
3,623,518	+				-1.4
3,623,519	-				-2.2
3,623,519	-				-0.4
3,623,519	-				-1.4
3,623,519	-				-0.9
3,623,519	-				-3.6
3,623,525	-				+0.4
3,623,566	+				+0.5
3,623,567	-				-2.5
3,623,578	+				-1.5
3,623,578	+				-1.4
3,623,578	+				-0.8
3,623,579	-				-1.0
3,623,579	-				+0.1
3,623,579	-				-0.1
3,623,579	-				-3.5
3,623,579	-				-0.7
3,623,579	-				-4.0
3,623,579	-				-1.1
3,623,579	-				+0.2
3,623,669	+				-1.5
3,623,670	-				+0.5
3,623,670	-				+0.2
3,623,676	+				+0.5
3,623,676	+				+2.2
3,623,676	+				+0.5
3,623,676	+				-0.4
3,623,676	+				-0.7
3,623,676	+				-0.9
3,623,676	+				-1.1
3,623,677	-				+3.0
3,623,677	-				+0.9
3,623,677	-				-0.5
3,623,677	-				+0.4
3,623,677	-				-1.4
3,623,677	-				+0.0
3,623,677	-				-1.7
3,623,681	-				+2.0
3,623,681	-				-1.6
3,623,681	-				-0.9
3,623,698	+				+1.4
3,623,698	+				-1.1
3,623,698	+				+1.4
3,623,698	+				+1.4
3,623,699	-				+0.8
3,623,699	-				-2.1
3,623,699	-				+0.3
3,623,803	+		DDA3937_RS15850	0.13	+1.7
3,623,803	+		DDA3937_RS15850	0.13	+2.7
3,623,857	+		DDA3937_RS15850	0.18	+0.0
3,623,857	+		DDA3937_RS15850	0.18	+0.1
3,623,857	+		DDA3937_RS15850	0.18	+0.0
3,623,857	+		DDA3937_RS15850	0.18	-0.9
3,623,858	-		DDA3937_RS15850	0.18	-2.0
3,623,858	-		DDA3937_RS15850	0.18	-1.1
3,623,858	-		DDA3937_RS15850	0.18	-2.1
3,623,858	-		DDA3937_RS15850	0.18	-0.3
3,623,858	-		DDA3937_RS15850	0.18	-1.6
3,623,858	-		DDA3937_RS15850	0.18	+0.1
3,623,858	-		DDA3937_RS15850	0.18	+0.3
3,623,858	-		DDA3937_RS15850	0.18	-1.1
3,623,877	+		DDA3937_RS15850	0.20	+1.1
3,623,877	+		DDA3937_RS15850	0.20	+3.2
3,623,877	+		DDA3937_RS15850	0.20	+1.0
3,623,877	+		DDA3937_RS15850	0.20	+1.6
3,623,878	-		DDA3937_RS15850	0.20	-2.9
3,623,878	-		DDA3937_RS15850	0.20	+0.9
3,623,883	+		DDA3937_RS15850	0.21	+0.2
3,623,884	-		DDA3937_RS15850	0.21	-2.0
3,623,884	-		DDA3937_RS15850	0.21	-2.3
3,623,884	-		DDA3937_RS15850	0.21	-0.0
3,623,884	-		DDA3937_RS15850	0.21	+0.7
3,623,884	-		DDA3937_RS15850	0.21	-0.6
3,623,884	-		DDA3937_RS15850	0.21	+0.4
3,623,893	-		DDA3937_RS15850	0.22	-1.1
3,623,893	-		DDA3937_RS15850	0.22	+0.9
3,623,930	+		DDA3937_RS15850	0.25	-1.5
3,623,931	-		DDA3937_RS15850	0.25	+0.0
3,623,931	-		DDA3937_RS15850	0.25	+0.6
3,623,931	-		DDA3937_RS15850	0.25	+0.1
3,623,984	-		DDA3937_RS15850	0.31	-0.0
3,624,027	+		DDA3937_RS15850	0.35	-0.7
3,624,028	-		DDA3937_RS15850	0.35	-1.4
3,624,028	-		DDA3937_RS15850	0.35	+0.5
3,624,028	-		DDA3937_RS15850	0.35	-0.9
3,624,028	-		DDA3937_RS15850	0.35	-0.0
3,624,028	-		DDA3937_RS15850	0.35	-1.7
3,624,028	-		DDA3937_RS15850	0.35	-1.3
3,624,028	-		DDA3937_RS15850	0.35	-2.0
3,624,129	+		DDA3937_RS15850	0.45	-0.6
3,624,130	-		DDA3937_RS15850	0.45	+0.3
3,624,130	-		DDA3937_RS15850	0.45	+1.1
3,624,130	-		DDA3937_RS15850	0.45	-0.7
3,624,189	+		DDA3937_RS15850	0.51	+1.0
3,624,190	-		DDA3937_RS15850	0.51	+0.6
3,624,190	-		DDA3937_RS15850	0.51	+2.3
3,624,257	+		DDA3937_RS15850	0.58	-0.9
3,624,258	-		DDA3937_RS15850	0.58	-1.5
3,624,258	-		DDA3937_RS15850	0.58	+0.6
3,624,290	-		DDA3937_RS15850	0.61	+2.2
3,624,290	-		DDA3937_RS15850	0.61	+0.1
3,624,290	-		DDA3937_RS15850	0.61	-2.6
3,624,292	+		DDA3937_RS15850	0.61	+0.3
3,624,292	+		DDA3937_RS15850	0.61	+1.1
3,624,292	+		DDA3937_RS15850	0.61	-0.9
3,624,292	+		DDA3937_RS15850	0.61	-0.0
3,624,292	+		DDA3937_RS15850	0.61	-0.0
3,624,293	-		DDA3937_RS15850	0.61	-0.2
3,624,293	-		DDA3937_RS15850	0.61	+0.0
3,624,293	-		DDA3937_RS15850	0.61	-2.3
3,624,293	-		DDA3937_RS15850	0.61	-1.4
3,624,293	-		DDA3937_RS15850	0.61	+0.8
3,624,310	+		DDA3937_RS15850	0.63	-1.4
3,624,310	+		DDA3937_RS15850	0.63	-0.7
3,624,311	-		DDA3937_RS15850	0.63	+0.8
3,624,337	+		DDA3937_RS15850	0.65	-1.1
3,624,337	+		DDA3937_RS15850	0.65	-1.6
3,624,337	+		DDA3937_RS15850	0.65	-1.4
3,624,337	+		DDA3937_RS15850	0.65	-0.9
3,624,338	-		DDA3937_RS15850	0.66	+0.1
3,624,338	-		DDA3937_RS15850	0.66	+0.6
3,624,338	-		DDA3937_RS15850	0.66	-3.0
3,624,338	-		DDA3937_RS15850	0.66	-0.5
3,624,338	-		DDA3937_RS15850	0.66	-2.8
3,624,338	-		DDA3937_RS15850	0.66	+1.9
3,624,338	-		DDA3937_RS15850	0.66	+1.2
3,624,339	+		DDA3937_RS15850	0.66	-2.5
3,624,340	-		DDA3937_RS15850	0.66	-2.0
3,624,340	-		DDA3937_RS15850	0.66	-1.0
3,624,559	+		DDA3937_RS15850	0.87	-2.6
3,624,561	+		DDA3937_RS15850	0.88	-1.4
3,624,561	+		DDA3937_RS15850	0.88	-2.7
3,624,561	+		DDA3937_RS15850	0.88	+1.1
3,624,561	+		DDA3937_RS15850	0.88	-1.4
3,624,562	-		DDA3937_RS15850	0.88	-1.7
3,624,562	-		DDA3937_RS15850	0.88	-1.1
3,624,562	-		DDA3937_RS15850	0.88	+0.2
3,624,562	-		DDA3937_RS15850	0.88	-0.3
3,624,562	-		DDA3937_RS15850	0.88	-2.1
3,624,562	-		DDA3937_RS15850	0.88	-1.5
3,624,562	-		DDA3937_RS15850	0.88	-1.1
3,624,562	-		DDA3937_RS15850	0.88	-3.4
3,624,571	-		DDA3937_RS15850	0.89	+1.3