Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14815

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,399,597	+				-0.3
3,399,598	-				-0.2
3,399,620	-				-0.3
3,399,620	-				+0.5
3,399,628	+				+0.3
3,399,629	-				+1.2
3,399,629	-				+0.9
3,399,634	+				-0.4
3,399,634	+				-1.2
3,399,634	+				-1.1
3,399,634	+				+0.8
3,399,634	+				+0.2
3,399,635	-				-0.3
3,399,635	-				+0.3
3,399,635	-				-1.0
3,399,638	+				-0.7
3,399,639	-				-1.5
3,399,639	-				+1.5
3,399,646	+				-0.2
3,399,652	-				-1.9
3,399,691	-				-0.1
3,399,745	-				-1.2
3,399,759	+				-1.2
3,399,759	+				-2.0
3,399,759	+				-0.0
3,399,759	+				-2.4
3,399,759	+				+2.9
3,399,759	+				-0.2
3,399,760	-				+1.8
3,399,760	-				+1.5
3,399,760	-				-1.7
3,399,760	-				-0.7
3,399,760	-				-1.5
3,399,770	+				-2.4
3,399,771	-				+0.3
3,399,771	-				-2.4
3,399,771	-				-1.0
3,399,771	-				-2.4
3,399,773	+				-2.0
3,399,774	-				+0.2
3,399,777	-				-2.5
3,399,790	-				+0.3
3,399,790	-				-0.5
3,399,822	+				-0.2
3,399,823	-				-1.0
3,399,826	+				+1.6
3,399,827	-				+2.9
3,399,827	-				-0.2
3,399,839	+				+0.8
3,399,839	+				+1.1
3,399,839	+				-2.9
3,399,839	+				-0.1
3,399,843	-				+0.3
3,399,857	+				+0.8
3,399,857	+				-2.0
3,399,857	+				-2.8
3,399,857	+				+2.9
3,399,858	-				-2.5
3,399,858	-				-1.0
3,399,858	-				-1.2
3,399,858	-				+1.3
3,399,858	-				+0.5
3,399,858	-				-0.2
3,399,858	-				-0.2
3,399,958	-				-2.2
3,399,958	-				-0.2
3,399,969	-				-2.6
3,399,969	-				-1.2
3,399,969	-				-2.1
3,399,986	+				+0.0
3,399,986	+				-3.1
3,399,986	+				-0.1
3,399,986	+				-2.9
3,399,987	-				+1.5
3,399,987	-				-2.5
3,399,987	-				+0.2
3,400,009	+				-2.8
3,400,009	+				+0.2
3,400,010	-				-0.2
3,400,010	-				-2.0
3,400,010	-				-1.1
3,400,010	-				+3.1
3,400,029	+				+0.2
3,400,030	-				-0.2
3,400,034	-				+0.6
3,400,034	-				+1.7
3,400,034	-				+1.3
3,400,034	-				-2.6
3,400,063	-				-1.5
3,400,090	+				+1.6
3,400,091	-				+1.2
3,400,092	+				-1.2
3,400,092	+				-2.5
3,400,092	+				+1.9
3,400,092	+				-1.5
3,400,093	-				+0.2
3,400,093	-				-0.2
3,400,093	-				-0.2
3,400,093	-				-0.7
3,400,093	-				+0.8
3,400,093	-				+0.3
3,400,093	-				-0.7
3,400,108	+				-1.5
3,400,109	-				+0.8
3,400,109	-				+0.8
3,400,109	-				-2.0
3,400,109	-				+1.3
3,400,116	+				+0.4
3,400,116	+				-1.2
3,400,116	+				-0.7
3,400,117	-				-2.0
3,400,117	-				-3.2
3,400,123	+				-2.1
3,400,123	+				-1.7
3,400,123	+				-0.6
3,400,123	+				+0.1
3,400,124	-				+0.3
3,400,124	-				+0.5
3,400,142	-				-4.2
3,400,163	-		DDA3937_RS23435	0.16	+1.3
3,400,261	+		DDA3937_RS23435	0.65	+1.3
3,400,261	+		DDA3937_RS23435	0.65	-0.2
3,400,267	-		DDA3937_RS23435	0.68	-0.0
3,400,271	+		DDA3937_RS23435	0.70	+0.4
3,400,272	-		DDA3937_RS23435	0.70	-1.0
3,400,277	+		DDA3937_RS23435	0.73	-1.7
3,400,278	-		DDA3937_RS23435	0.73	-2.1
3,400,288	+		DDA3937_RS23435	0.78	+0.6
3,400,289	-		DDA3937_RS23435	0.79	-0.7
3,400,289	-		DDA3937_RS23435	0.79	+0.2
3,400,289	-		DDA3937_RS23435	0.79	-2.2
3,400,304	+		DDA3937_RS23435	0.86	+0.2
3,400,304	+		DDA3937_RS23435	0.86	-0.6
3,400,304	+		DDA3937_RS23435	0.86	-0.2
3,400,309	-		DDA3937_RS23435	0.89	+0.3
3,400,309	-		DDA3937_RS23435	0.89	+1.5
3,400,321	+				-0.9
3,400,401	+				-1.4
3,400,413	+				+0.3
3,400,414	-				-2.5
3,400,414	-				-1.0
3,400,416	+				+1.5
3,400,449	-				-2.7
3,400,449	-				-2.6
3,400,528	+				+0.3
3,400,553	+				+1.4
3,400,553	+				+1.9
3,400,554	-				-0.7
3,400,554	-				+0.9
3,400,554	-				-0.2
3,400,554	-				+0.4
3,400,567	+				+1.2
3,400,567	+				-1.5
3,400,568	-				-2.2
3,400,568	-				+2.3
3,400,593	+				+0.3
3,400,594	-				-0.1
3,400,620	+				+0.1
3,400,621	-				-3.3
3,400,630	+				-0.2
3,400,631	-				+1.3
3,400,645	+		DDA3937_RS14815	0.11	-2.1
3,400,646	-		DDA3937_RS14815	0.11	+1.2
3,400,663	-		DDA3937_RS14815	0.14	+0.9
3,400,957	+		DDA3937_RS14815	0.58	-1.6
3,400,957	+		DDA3937_RS14815	0.58	-0.2
3,400,957	+		DDA3937_RS14815	0.58	+1.5
3,400,957	+		DDA3937_RS14815	0.58	-2.0
3,400,958	-		DDA3937_RS14815	0.58	-0.5
3,400,981	+		DDA3937_RS14815	0.62	-1.9
3,400,981	+		DDA3937_RS14815	0.62	-0.2
3,400,982	-		DDA3937_RS14815	0.62	-1.8
3,400,982	-		DDA3937_RS14815	0.62	-0.2
3,400,982	-		DDA3937_RS14815	0.62	-2.6
3,400,982	-		DDA3937_RS14815	0.62	-1.8
3,400,982	-		DDA3937_RS14815	0.62	-0.2
3,400,982	-		DDA3937_RS14815	0.62	+2.9
3,400,983	+		DDA3937_RS14815	0.62	-2.0
3,400,983	+		DDA3937_RS14815	0.62	-0.8
3,400,983	+		DDA3937_RS14815	0.62	-2.7
3,400,983	+		DDA3937_RS14815	0.62	+0.3
3,400,984	-		DDA3937_RS14815	0.62	+2.0
3,400,984	-		DDA3937_RS14815	0.62	-0.6
3,400,984	-		DDA3937_RS14815	0.62	+1.7
3,400,984	-		DDA3937_RS14815	0.62	+0.3
3,400,984	-		DDA3937_RS14815	0.62	+1.1
3,400,984	-		DDA3937_RS14815	0.62	+0.5
3,401,085	+		DDA3937_RS14815	0.77	+1.8
3,401,085	+		DDA3937_RS14815	0.77	+2.1
3,401,317	+				-0.2
3,401,317	+		DDA3937_RS14820	0.12	-3.4
3,401,370	+		DDA3937_RS14820	0.25	+0.8
3,401,435	+		DDA3937_RS14820	0.41	+2.6
3,401,435	+		DDA3937_RS14820	0.41	-1.2
3,401,435	+		DDA3937_RS14820	0.41	+0.2
3,401,436	-		DDA3937_RS14820	0.41	-0.2
3,401,436	-		DDA3937_RS14820	0.41	-0.3
3,401,436	-		DDA3937_RS14820	0.41	+1.3
3,401,436	-		DDA3937_RS14820	0.41	+0.5
3,401,436	-		DDA3937_RS14820	0.41	-0.7
3,401,456	+		DDA3937_RS14820	0.46	-0.4
3,401,457	-		DDA3937_RS14820	0.47	-0.1
3,401,506	-		DDA3937_RS14820	0.59	+1.3
3,401,509	+		DDA3937_RS14820	0.59	-1.2
3,401,509	+		DDA3937_RS14820	0.59	+1.5
3,401,509	+		DDA3937_RS14820	0.59	-2.0
3,401,510	-		DDA3937_RS14820	0.60	+1.4
3,401,510	-		DDA3937_RS14820	0.60	+0.8
3,401,510	-		DDA3937_RS14820	0.60	+1.7
3,401,663	+				-0.7
3,401,663	+				+1.1
3,401,663	+				+0.0
3,401,663	+				+0.6
3,401,663	+				+0.6
3,401,663	+				-1.5
3,401,664	-				-1.5
3,401,664	-				-1.6
3,401,664	-				-0.7
3,401,664	-				-2.1
3,401,664	-				-1.5
3,401,664	-				-0.0
3,401,686	+				+1.8
3,401,689	+				-2.3
3,401,690	-				-2.9
3,401,696	+				+0.3
3,401,696	+				-1.0
3,401,735	+				-1.0
3,401,831	+				+2.2
3,401,831	+				+1.7
3,401,832	-				-0.7
3,401,832	-				-2.7
3,401,955	-		DDA3937_RS14825	0.10	-1.5
3,401,955	-		DDA3937_RS14825	0.10	-0.2
3,402,041	+		DDA3937_RS14825	0.17	-1.9
3,402,068	+		DDA3937_RS14825	0.19	-1.6
3,402,068	+		DDA3937_RS14825	0.19	-0.2
3,402,068	+		DDA3937_RS14825	0.19	-2.5
3,402,068	+		DDA3937_RS14825	0.19	-2.9
3,402,068	+		DDA3937_RS14825	0.19	-0.3
3,402,068	+		DDA3937_RS14825	0.19	-2.2
3,402,068	+		DDA3937_RS14825	0.19	-2.0
3,402,068	+		DDA3937_RS14825	0.19	+0.9
3,402,068	+		DDA3937_RS14825	0.19	+0.3
3,402,068	+		DDA3937_RS14825	0.19	-0.2
3,402,069	-		DDA3937_RS14825	0.20	+0.6
3,402,069	-		DDA3937_RS14825	0.20	-0.2
3,402,069	-		DDA3937_RS14825	0.20	+2.7
3,402,069	-		DDA3937_RS14825	0.20	+1.3
3,402,069	-		DDA3937_RS14825	0.20	-0.8
3,402,069	-		DDA3937_RS14825	0.20	+0.4
3,402,069	-		DDA3937_RS14825	0.20	-1.1
3,402,069	-		DDA3937_RS14825	0.20	-1.0
3,402,069	-		DDA3937_RS14825	0.20	+1.9
3,402,069	-		DDA3937_RS14825	0.20	+2.5
3,402,069	-		DDA3937_RS14825	0.20	+0.9
3,402,069	-		DDA3937_RS14825	0.20	+1.4