Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14710

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,378,025	+		DDA3937_RS14705	0.30	-0.3
3,378,192	+		DDA3937_RS14705	0.44	+1.7
3,378,192	+		DDA3937_RS14705	0.44	+1.5
3,378,193	-		DDA3937_RS14705	0.44	-1.0
3,378,193	-		DDA3937_RS14705	0.44	+0.4
3,378,193	-		DDA3937_RS14705	0.44	+1.3
3,378,193	-		DDA3937_RS14705	0.44	-0.1
3,378,257	+		DDA3937_RS14705	0.50	+1.5
3,378,258	-		DDA3937_RS14705	0.50	-2.2
3,378,258	-		DDA3937_RS14705	0.50	+0.1
3,378,258	-		DDA3937_RS14705	0.50	-3.1
3,378,537	-		DDA3937_RS14705	0.73	+0.4
3,378,688	+		DDA3937_RS14705	0.86	-1.5
3,378,794	+				-0.1
3,379,083	+		DDA3937_RS14710	0.14	-2.0
3,379,083	+		DDA3937_RS14710	0.14	-0.4
3,379,083	+		DDA3937_RS14710	0.14	-2.2
3,379,084	-		DDA3937_RS14710	0.14	+1.8
3,379,084	-		DDA3937_RS14710	0.14	-0.7
3,379,089	+		DDA3937_RS14710	0.15	-1.2
3,379,089	+		DDA3937_RS14710	0.15	+1.8
3,379,089	+		DDA3937_RS14710	0.15	-0.5
3,379,090	-		DDA3937_RS14710	0.15	-1.4
3,379,110	-		DDA3937_RS14710	0.16	-1.7
3,379,110	-		DDA3937_RS14710	0.16	-1.0
3,379,118	+		DDA3937_RS14710	0.16	+1.2
3,379,118	+		DDA3937_RS14710	0.16	+1.9
3,379,119	-		DDA3937_RS14710	0.16	-0.2
3,379,119	-		DDA3937_RS14710	0.16	-1.0
3,379,119	-		DDA3937_RS14710	0.16	-1.7
3,379,258	+		DDA3937_RS14710	0.25	-1.2
3,379,258	+				-0.2
3,379,259	-		DDA3937_RS14710	0.25	-1.0
3,379,297	-		DDA3937_RS14710	0.27	-1.0
3,379,297	-		DDA3937_RS14710	0.27	-1.8
3,379,449	+		DDA3937_RS14710	0.37	-0.7
3,379,449	+		DDA3937_RS14710	0.37	+1.2
3,379,472	+		DDA3937_RS14710	0.38	-0.3
3,379,473	-		DDA3937_RS14710	0.38	+0.5
3,379,473	-		DDA3937_RS14710	0.38	-0.2
3,379,475	+		DDA3937_RS14710	0.38	-2.8
3,379,475	+		DDA3937_RS14710	0.38	-2.2
3,379,475	+		DDA3937_RS14710	0.38	+0.9
3,379,476	-		DDA3937_RS14710	0.38	-0.5
3,379,476	-		DDA3937_RS14710	0.38	-1.7
3,379,478	+		DDA3937_RS14710	0.38	+0.2
3,379,478	+		DDA3937_RS14710	0.38	+1.1
3,379,478	+		DDA3937_RS14710	0.38	+1.6
3,379,478	+		DDA3937_RS14710	0.38	-0.0
3,379,478	+		DDA3937_RS14710	0.38	+1.7
3,379,478	+		DDA3937_RS14710	0.38	-1.1
3,379,479	-		DDA3937_RS14710	0.39	+0.0
3,379,479	-		DDA3937_RS14710	0.39	-1.0
3,379,479	-		DDA3937_RS14710	0.39	+0.3
3,379,479	-		DDA3937_RS14710	0.39	+1.1
3,379,555	+		DDA3937_RS14710	0.43	-1.4
3,379,559	+		DDA3937_RS14710	0.43	-0.1
3,379,560	-		DDA3937_RS14710	0.44	-0.7
3,379,595	+		DDA3937_RS14710	0.46	+1.9
3,379,595	+		DDA3937_RS14710	0.46	+0.5
3,379,595	+		DDA3937_RS14710	0.46	-2.7
3,379,595	+				-0.2
3,379,595	+		DDA3937_RS14710	0.46	+0.2
3,379,596	-		DDA3937_RS14710	0.46	+2.5
3,379,874	+		DDA3937_RS14710	0.63	-1.8
3,379,874	+		DDA3937_RS14710	0.63	-0.2
3,379,874	+		DDA3937_RS14710	0.63	-0.8
3,379,874	+		DDA3937_RS14710	0.63	+0.0
3,379,875	-		DDA3937_RS14710	0.63	-2.5
3,379,875	-		DDA3937_RS14710	0.63	-1.3
3,379,875	-		DDA3937_RS14710	0.63	-1.2
3,379,875	-		DDA3937_RS14710	0.63	-1.0
3,379,876	+		DDA3937_RS14710	0.63	-1.2
3,379,947	+		DDA3937_RS14710	0.67	+0.3
3,379,947	+		DDA3937_RS14710	0.67	-1.6
3,379,948	-		DDA3937_RS14710	0.67	-1.7
3,379,948	-		DDA3937_RS14710	0.67	+0.9
3,379,948	-		DDA3937_RS14710	0.67	+0.7
3,379,948	-		DDA3937_RS14710	0.67	+2.1
3,380,018	+		DDA3937_RS14710	0.72	+2.3
3,380,019	-		DDA3937_RS14710	0.72	-3.0
3,380,019	-		DDA3937_RS14710	0.72	-1.5
3,380,019	-				-0.2
3,380,034	-		DDA3937_RS14710	0.73	+2.7
3,380,036	+		DDA3937_RS14710	0.73	+0.5
3,380,036	+		DDA3937_RS14710	0.73	-1.7
3,380,037	-		DDA3937_RS14710	0.73	+0.8
3,380,084	+		DDA3937_RS14710	0.76	+0.8
3,380,084	+		DDA3937_RS14710	0.76	-2.0
3,380,085	-		DDA3937_RS14710	0.76	+0.8
3,380,085	-		DDA3937_RS14710	0.76	-1.7
3,380,127	+		DDA3937_RS14710	0.78	-1.7
3,380,127	+		DDA3937_RS14710	0.78	+0.0
3,380,127	+		DDA3937_RS14710	0.78	+1.6
3,380,127	+		DDA3937_RS14710	0.78	-1.2
3,380,127	+		DDA3937_RS14710	0.78	+1.6
3,380,127	+		DDA3937_RS14710	0.78	-0.7
3,380,128	-		DDA3937_RS14710	0.78	+1.1
3,380,128	-		DDA3937_RS14710	0.78	-0.4
3,380,128	-		DDA3937_RS14710	0.78	+0.9
3,380,354	+				+0.9
3,380,355	-				-0.2
3,380,477	+				+2.4
3,380,477	+				-3.4
3,380,478	-				+1.5
3,380,478	-				+0.0
3,380,488	+				+0.0
3,380,532	+				-2.2
3,380,532	+				+1.9
3,380,533	-				+0.2
3,380,533	-				-1.0
3,380,548	+				-1.5
3,380,549	-				-1.7
3,380,603	+		DDA3937_RS14715	0.14	+1.0
3,380,603	+		DDA3937_RS14715	0.14	+2.6
3,380,603	+		DDA3937_RS14715	0.14	-1.7
3,380,604	-		DDA3937_RS14715	0.14	+0.9
3,380,604	-		DDA3937_RS14715	0.14	+0.6
3,380,708	+		DDA3937_RS14715	0.26	-2.5
3,380,709	-				-1.0
3,380,756	-		DDA3937_RS14715	0.31	+1.3
3,380,841	+		DDA3937_RS14715	0.41	+0.9
3,380,842	-		DDA3937_RS14715	0.41	-0.5
3,380,923	+		DDA3937_RS14715	0.50	+0.6
3,380,923	+		DDA3937_RS14715	0.50	+1.2
3,380,923	+		DDA3937_RS14715	0.50	-1.7
3,380,924	-		DDA3937_RS14715	0.50	-1.1
3,380,934	+		DDA3937_RS14715	0.51	-0.8
3,380,934	+		DDA3937_RS14715	0.51	-2.2
3,380,934	+		DDA3937_RS14715	0.51	+0.3
3,380,934	+				-1.0
3,380,934	+		DDA3937_RS14715	0.51	+0.6
3,380,935	-		DDA3937_RS14715	0.52	-1.5
3,380,936	+		DDA3937_RS14715	0.52	-0.1
3,380,936	+		DDA3937_RS14715	0.52	-1.3
3,380,936	+		DDA3937_RS14715	0.52	+0.9
3,380,936	+		DDA3937_RS14715	0.52	-0.2
3,380,937	-		DDA3937_RS14715	0.52	-0.6
3,380,977	+				+0.3
3,381,212	+		DDA3937_RS14715	0.83	+0.2
3,381,213	-		DDA3937_RS14715	0.83	-2.7
3,381,327	+				+2.3
3,381,327	+				+0.0
3,381,327	+				-2.2
3,381,328	-				+1.2
3,381,328	-				+0.8
3,381,328	-				+1.1