Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14120

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,229,674	+		DDA3937_RS14115	0.30	-0.9
3,229,675	-				+3.1
3,229,824	-		DDA3937_RS14115	0.41	-1.7
3,230,135	+		DDA3937_RS14115	0.63	+2.1
3,230,135	+		DDA3937_RS14115	0.63	-1.4
3,230,135	+		DDA3937_RS14115	0.63	-3.1
3,230,135	+		DDA3937_RS14115	0.63	-0.5
3,230,136	-		DDA3937_RS14115	0.63	-3.1
3,230,136	-				-0.3
3,230,136	-		DDA3937_RS14115	0.63	-0.3
3,230,136	-		DDA3937_RS14115	0.63	+1.3
3,230,136	-		DDA3937_RS14115	0.63	-1.4
3,230,136	-		DDA3937_RS14115	0.63	+0.1
3,230,188	+		DDA3937_RS14115	0.67	-2.4
3,230,188	+		DDA3937_RS14115	0.67	+0.3
3,230,188	+		DDA3937_RS14115	0.67	-0.5
3,230,189	-		DDA3937_RS14115	0.67	+0.1
3,230,189	-		DDA3937_RS14115	0.67	-1.9
3,230,243	+		DDA3937_RS14115	0.71	+0.8
3,230,244	-		DDA3937_RS14115	0.71	-0.5
3,230,536	+				-1.1
3,230,587	+				+0.3
3,230,613	+				-0.5
3,230,634	+				-0.3
3,230,634	+				+1.2
3,230,634	+				+1.2
3,230,634	+				-1.9
3,230,635	-				+0.6
3,230,635	-				+1.3
3,230,672	-				-0.3
3,230,672	-				+0.8
3,230,672	-				-3.3
3,230,672	-				+0.1
3,230,677	+				-0.0
3,230,678	-				+2.2
3,230,678	-				+0.1
3,230,818	+				+3.4
3,230,819	-				-0.8
3,230,937	+				-0.7
3,230,937	+				-1.0
3,230,937	+				+1.0
3,230,937	+				-1.6
3,230,937	+				-0.8
3,230,938	-				-0.7
3,230,938	-				+2.1
3,230,938	-				+1.5
3,230,938	-				+1.6
3,230,938	-				-3.8
3,231,040	-		DDA3937_RS14120	0.12	-1.3
3,231,062	+		DDA3937_RS14120	0.13	-0.3
3,231,062	+		DDA3937_RS14120	0.13	+1.0
3,231,062	+		DDA3937_RS14120	0.13	+0.5
3,231,062	+		DDA3937_RS14120	0.13	-0.0
3,231,063	-		DDA3937_RS14120	0.13	-0.7
3,231,063	-		DDA3937_RS14120	0.13	-1.5
3,231,063	-		DDA3937_RS14120	0.13	-0.3
3,231,086	+		DDA3937_RS14120	0.14	-1.3
3,231,087	-		DDA3937_RS14120	0.14	-0.7
3,231,141	+		DDA3937_RS14120	0.15	-0.3
3,231,141	+		DDA3937_RS14120	0.15	+0.3
3,231,141	+		DDA3937_RS14120	0.15	+0.3
3,231,141	+		DDA3937_RS14120	0.15	+0.1
3,231,141	+		DDA3937_RS14120	0.15	-1.3
3,231,142	-		DDA3937_RS14120	0.15	+0.5
3,231,142	-				+2.7
3,231,142	-		DDA3937_RS14120	0.15	-1.5
3,231,187	-		DDA3937_RS14120	0.17	-1.0
3,231,187	-		DDA3937_RS14120	0.17	+2.4
3,231,360	+		DDA3937_RS14120	0.22	-1.1
3,231,385	-		DDA3937_RS14120	0.23	+0.7
3,231,512	-		DDA3937_RS14120	0.27	-1.0
3,231,513	+		DDA3937_RS14120	0.27	+0.3
3,231,513	+		DDA3937_RS14120	0.27	+1.4
3,231,513	+		DDA3937_RS14120	0.27	-1.7
3,231,513	+		DDA3937_RS14120	0.27	-1.3
3,231,514	-		DDA3937_RS14120	0.27	-2.0
3,231,514	-		DDA3937_RS14120	0.27	+0.6
3,231,514	-		DDA3937_RS14120	0.27	-1.9
3,231,555	+		DDA3937_RS14120	0.28	+0.5
3,231,555	+		DDA3937_RS14120	0.28	-1.9
3,231,556	-		DDA3937_RS14120	0.28	+0.6
3,231,556	-		DDA3937_RS14120	0.28	+0.6
3,231,556	-		DDA3937_RS14120	0.28	+2.1
3,231,556	-		DDA3937_RS14120	0.28	-1.3
3,231,556	-		DDA3937_RS14120	0.28	-0.5
3,231,674	-		DDA3937_RS14120	0.32	-0.4
3,231,773	+		DDA3937_RS14120	0.35	+1.6
3,231,773	+		DDA3937_RS14120	0.35	-0.1
3,231,774	-		DDA3937_RS14120	0.35	-1.0
3,231,784	+		DDA3937_RS14120	0.36	-1.7
3,231,785	-		DDA3937_RS14120	0.36	+0.7
3,232,035	+		DDA3937_RS14120	0.44	-1.0
3,232,036	-		DDA3937_RS14120	0.44	-0.0
3,232,036	-				-0.3
3,232,130	-		DDA3937_RS14120	0.47	-1.3
3,232,244	-		DDA3937_RS14120	0.50	+1.4
3,232,257	-		DDA3937_RS14120	0.51	+2.0
3,232,312	+		DDA3937_RS14120	0.52	+2.0
3,232,312	+		DDA3937_RS14120	0.52	-0.4
3,232,419	+		DDA3937_RS14120	0.56	-0.5
3,232,463	+		DDA3937_RS14120	0.57	-1.3
3,232,694	+		DDA3937_RS14120	0.64	-4.0
3,232,694	+		DDA3937_RS14120	0.64	+0.9
3,232,823	-		DDA3937_RS14120	0.68	-2.0
3,232,995	+		DDA3937_RS14120	0.74	+1.9
3,232,995	+		DDA3937_RS14120	0.74	+0.7
3,232,995	+		DDA3937_RS14120	0.74	+0.4
3,232,996	-				+3.6
3,232,996	-		DDA3937_RS14120	0.74	+0.7
3,233,212	+		DDA3937_RS14120	0.81	+0.7
3,233,233	-		DDA3937_RS14120	0.81	-1.8
3,233,263	+		DDA3937_RS14120	0.82	-1.7
3,233,263	+		DDA3937_RS14120	0.82	+0.3
3,233,264	-		DDA3937_RS14120	0.82	-0.7
3,233,264	-		DDA3937_RS14120	0.82	-1.5
3,233,294	+		DDA3937_RS14120	0.83	-2.0
3,233,294	+		DDA3937_RS14120	0.83	+0.5
3,233,295	-		DDA3937_RS14120	0.83	-1.0
3,233,295	-		DDA3937_RS14120	0.83	-3.6
3,233,349	+		DDA3937_RS14120	0.85	-2.1
3,233,349	+		DDA3937_RS14120	0.85	-1.3
3,233,349	+		DDA3937_RS14120	0.85	-0.9
3,233,349	+		DDA3937_RS14120	0.85	+1.1
3,233,349	+		DDA3937_RS14120	0.85	+1.0
3,233,350	-		DDA3937_RS14120	0.85	-2.0
3,233,350	-		DDA3937_RS14120	0.85	-0.9
3,233,350	-		DDA3937_RS14120	0.85	-2.0
3,233,350	-		DDA3937_RS14120	0.85	+0.6
3,233,377	+		DDA3937_RS14120	0.86	-1.9
3,233,378	-		DDA3937_RS14120	0.86	-1.5
3,233,391	+		DDA3937_RS14120	0.86	-0.2
3,233,402	-		DDA3937_RS14120	0.87	-1.1
3,233,491	+		DDA3937_RS14120	0.90	-1.5
3,233,491	+		DDA3937_RS14120	0.90	-1.0
3,233,492	-		DDA3937_RS14120	0.90	-2.3
3,233,492	-		DDA3937_RS14120	0.90	+0.5
3,233,555	+				-1.3
3,233,555	+				-0.2
3,233,555	+				+1.9
3,233,555	+				-2.9
3,233,555	+				-0.4
3,233,556	-				+0.6
3,233,556	-				-1.5
3,233,589	+				+0.3
3,233,893	-				-0.7
3,234,024	+		DDA3937_RS14125	0.17	-0.9
3,234,025	-		DDA3937_RS14125	0.18	-0.4
3,234,025	-		DDA3937_RS14125	0.18	-0.7
3,234,041	+		DDA3937_RS14125	0.19	-2.1
3,234,041	+		DDA3937_RS14125	0.19	-0.1
3,234,115	+		DDA3937_RS14125	0.25	-2.0
3,234,150	+		DDA3937_RS14125	0.28	+0.8
3,234,150	+		DDA3937_RS14125	0.28	+1.9
3,234,245	+		DDA3937_RS14125	0.37	-0.7
3,234,246	-		DDA3937_RS14125	0.37	-1.3
3,234,347	+		DDA3937_RS14125	0.46	-0.1
3,234,347	+		DDA3937_RS14125	0.46	+1.8
3,234,347	+		DDA3937_RS14125	0.46	-0.4
3,234,347	+		DDA3937_RS14125	0.46	-1.0
3,234,347	+		DDA3937_RS14125	0.46	-1.0
3,234,348	-		DDA3937_RS14125	0.46	-2.3
3,234,348	-		DDA3937_RS14125	0.46	-0.0
3,234,348	-		DDA3937_RS14125	0.46	-2.6
3,234,348	-		DDA3937_RS14125	0.46	-0.0
3,234,348	-		DDA3937_RS14125	0.46	+0.2
3,234,369	+		DDA3937_RS14125	0.48	-1.9
3,234,370	-		DDA3937_RS14125	0.48	+1.7
3,234,372	+		DDA3937_RS14125	0.48	-3.1
3,234,429	+		DDA3937_RS14125	0.53	-0.4
3,234,429	+		DDA3937_RS14125	0.53	+0.9
3,234,457	-		DDA3937_RS14125	0.55	+2.0
3,234,468	-		DDA3937_RS14125	0.56	+2.5
3,234,468	-		DDA3937_RS14125	0.56	-0.3
3,234,536	+		DDA3937_RS14125	0.62	-1.9
3,234,536	+		DDA3937_RS14125	0.62	-2.4
3,234,536	+		DDA3937_RS14125	0.62	+0.5
3,234,536	+		DDA3937_RS14125	0.62	+2.5
3,234,536	+		DDA3937_RS14125	0.62	-2.0
3,234,536	+		DDA3937_RS14125	0.62	+1.5
3,234,536	+		DDA3937_RS14125	0.62	+0.6
3,234,536	+		DDA3937_RS14125	0.62	-0.2
3,234,537	-		DDA3937_RS14125	0.62	-1.7
3,234,537	-		DDA3937_RS14125	0.62	-1.0
3,234,537	-		DDA3937_RS14125	0.62	+0.3
3,234,537	-		DDA3937_RS14125	0.62	-2.2
3,234,537	-		DDA3937_RS14125	0.62	-1.1
3,234,537	-		DDA3937_RS14125	0.62	+1.0
3,234,537	-		DDA3937_RS14125	0.62	-1.2
3,234,704	+		DDA3937_RS14125	0.77	+1.9
3,234,704	+		DDA3937_RS14125	0.77	-1.2
3,234,704	+		DDA3937_RS14125	0.77	-0.9
3,234,704	+		DDA3937_RS14125	0.77	-0.5
3,234,704	+		DDA3937_RS14125	0.77	+0.5
3,234,705	-		DDA3937_RS14125	0.77	+0.5
3,234,705	-		DDA3937_RS14125	0.77	-1.3
3,234,705	-		DDA3937_RS14125	0.77	+0.7
3,234,705	-		DDA3937_RS14125	0.77	+0.1
3,234,709	+		DDA3937_RS14125	0.77	+0.4
3,234,709	+		DDA3937_RS14125	0.77	-2.8
3,234,709	+		DDA3937_RS14125	0.77	-1.1
3,234,710	-		DDA3937_RS14125	0.77	-0.7
3,234,710	-		DDA3937_RS14125	0.77	-1.3
3,234,710	-		DDA3937_RS14125	0.77	-0.1
3,234,725	-		DDA3937_RS14125	0.79	-1.0
3,234,745	+		DDA3937_RS14125	0.80	-1.1
3,234,746	-		DDA3937_RS14125	0.80	-0.8