Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13665

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,108,251	-		DDA3937_RS13660	0.34	-3.8
3,108,261	+		DDA3937_RS13660	0.35	+1.0
3,108,262	-		DDA3937_RS13660	0.35	-2.7
3,108,278	-		DDA3937_RS13660	0.36	-0.1
3,108,278	-		DDA3937_RS13660	0.36	+0.6
3,108,278	-		DDA3937_RS13660	0.36	-3.6
3,108,341	+		DDA3937_RS13660	0.41	-1.7
3,108,350	-		DDA3937_RS13660	0.42	+0.9
3,108,385	+		DDA3937_RS13660	0.45	-1.5
3,108,385	+		DDA3937_RS13660	0.45	-1.0
3,108,386	-		DDA3937_RS13660	0.45	-2.3
3,108,386	-		DDA3937_RS13660	0.45	-0.7
3,108,393	+		DDA3937_RS13660	0.45	-0.5
3,108,393	+		DDA3937_RS13660	0.45	-0.5
3,108,393	+		DDA3937_RS13660	0.45	-0.2
3,108,394	-		DDA3937_RS13660	0.45	+1.1
3,108,394	-		DDA3937_RS13660	0.45	-1.5
3,108,409	+		DDA3937_RS13660	0.47	-1.7
3,108,451	+				-0.3
3,108,512	+		DDA3937_RS13660	0.55	+1.2
3,108,512	+		DDA3937_RS13660	0.55	+2.9
3,108,512	+		DDA3937_RS13660	0.55	+0.3
3,108,579	-		DDA3937_RS13660	0.60	-1.3
3,108,653	-		DDA3937_RS13660	0.66	-0.5
3,108,736	+		DDA3937_RS13660	0.72	-1.9
3,108,739	+		DDA3937_RS13660	0.72	+3.2
3,108,739	+		DDA3937_RS13660	0.72	+1.7
3,108,740	-		DDA3937_RS13660	0.72	+2.0
3,108,876	+		DDA3937_RS13660	0.83	-1.2
3,108,876	+				-0.3
3,108,876	+		DDA3937_RS13660	0.83	-3.2
3,108,876	+		DDA3937_RS13660	0.83	-0.1
3,108,877	-		DDA3937_RS13660	0.83	-3.7
3,108,877	-		DDA3937_RS13660	0.83	-1.3
3,108,877	-		DDA3937_RS13660	0.83	-2.8
3,108,877	-				+1.3
3,108,877	-		DDA3937_RS13660	0.83	+2.4
3,108,880	+		DDA3937_RS13660	0.83	+0.3
3,108,881	-		DDA3937_RS13660	0.83	-0.7
3,108,881	-		DDA3937_RS13660	0.83	+0.4
3,108,881	-		DDA3937_RS13660	0.83	+0.4
3,108,881	-		DDA3937_RS13660	0.83	-1.0
3,109,006	+				-2.4
3,109,006	+				-1.5
3,109,006	+				+0.3
3,109,079	+				-1.9
3,109,080	-				+2.2
3,109,080	-				+0.6
3,109,080	-				-0.4
3,109,080	-				+2.3
3,109,087	+				+1.8
3,109,109	-				-1.4
3,109,109	-				+1.7
3,109,116	+				-1.5
3,109,183	+				-2.6
3,109,184	-				+0.6
3,109,229	+				+0.0
3,109,306	-				-2.3
3,109,426	+				-0.1
3,109,427	-				+2.0
3,109,466	+				-0.1
3,109,466	+				-1.0
3,109,467	-				+1.4
3,109,487	+				-0.5
3,109,488	-				+0.6
3,109,605	-		DDA3937_RS13665	0.14	+2.0
3,109,637	-		DDA3937_RS13665	0.16	-3.9
3,109,661	+		DDA3937_RS13665	0.17	-2.3
3,109,662	-		DDA3937_RS13665	0.17	-1.5
3,109,707	+		DDA3937_RS13665	0.18	-2.3
3,109,875	+		DDA3937_RS13665	0.25	-1.9
3,109,875	+		DDA3937_RS13665	0.25	+2.3
3,109,876	-		DDA3937_RS13665	0.25	-1.9
3,109,933	-		DDA3937_RS13665	0.27	-3.0
3,109,946	+		DDA3937_RS13665	0.28	+0.8
3,109,947	-		DDA3937_RS13665	0.28	+1.0
3,109,947	-		DDA3937_RS13665	0.28	-2.4
3,109,975	+		DDA3937_RS13665	0.29	+0.1
3,109,975	+		DDA3937_RS13665	0.29	-0.5
3,110,229	+		DDA3937_RS13665	0.38	-1.5
3,110,230	-		DDA3937_RS13665	0.38	-0.6
3,110,268	-		DDA3937_RS13665	0.40	+3.7
3,110,311	-		DDA3937_RS13665	0.42	+1.2
3,110,313	-		DDA3937_RS13665	0.42	-1.0
3,110,506	-		DDA3937_RS13665	0.49	-1.7
3,110,520	-		DDA3937_RS13665	0.50	-1.3
3,110,520	-				+0.3
3,110,543	-		DDA3937_RS13665	0.50	+1.3
3,110,583	+		DDA3937_RS13665	0.52	-3.0
3,110,584	-		DDA3937_RS13665	0.52	-1.2
3,110,702	+		DDA3937_RS13665	0.57	-2.2
3,110,703	-		DDA3937_RS13665	0.57	+1.3
3,110,703	-		DDA3937_RS13665	0.57	+1.0
3,110,703	-		DDA3937_RS13665	0.57	-3.2
3,110,703	-		DDA3937_RS13665	0.57	+0.7
3,110,703	-		DDA3937_RS13665	0.57	-0.7
3,110,703	-		DDA3937_RS13665	0.57	-3.6
3,110,703	-		DDA3937_RS13665	0.57	+0.2
3,110,703	-		DDA3937_RS13665	0.57	-2.0
3,110,703	-		DDA3937_RS13665	0.57	-1.9
3,110,705	+		DDA3937_RS13665	0.57	-2.2
3,110,705	+		DDA3937_RS13665	0.57	-1.3
3,110,705	+		DDA3937_RS13665	0.57	-2.2
3,110,705	+		DDA3937_RS13665	0.57	-1.9
3,110,705	+		DDA3937_RS13665	0.57	-1.2
3,110,705	+		DDA3937_RS13665	0.57	+0.0
3,110,706	-		DDA3937_RS13665	0.57	+2.4
3,110,706	-				-0.7
3,110,706	-		DDA3937_RS13665	0.57	+0.4
3,110,706	-				-0.7
3,110,729	-		DDA3937_RS13665	0.58	+1.3
3,110,900	+		DDA3937_RS13665	0.64	-1.5
3,110,950	+		DDA3937_RS13665	0.66	-2.5
3,110,950	+		DDA3937_RS13665	0.66	-2.8
3,110,950	+		DDA3937_RS13665	0.66	-1.3
3,110,950	+		DDA3937_RS13665	0.66	+1.3
3,110,981	+		DDA3937_RS13665	0.67	-1.7
3,110,982	-		DDA3937_RS13665	0.67	+1.5
3,111,091	-		DDA3937_RS13665	0.71	+4.4
3,111,100	+		DDA3937_RS13665	0.72	-2.9
3,111,100	+		DDA3937_RS13665	0.72	+0.3
3,111,101	-		DDA3937_RS13665	0.72	+0.4
3,111,187	-		DDA3937_RS13665	0.75	-1.0
3,111,187	-		DDA3937_RS13665	0.75	-2.3
3,111,199	+		DDA3937_RS13665	0.76	-0.5
3,111,200	-		DDA3937_RS13665	0.76	-1.4
3,111,374	-		DDA3937_RS13665	0.82	+1.6
3,111,405	+		DDA3937_RS13665	0.84	-2.7
3,111,405	+		DDA3937_RS13665	0.84	-0.3
3,111,406	-		DDA3937_RS13665	0.84	+2.9
3,111,420	+		DDA3937_RS13665	0.84	-0.3
3,111,421	-		DDA3937_RS13665	0.84	+0.9
3,111,464	+		DDA3937_RS13665	0.86	-0.0
3,111,464	+		DDA3937_RS13665	0.86	-1.1
3,111,465	-		DDA3937_RS13665	0.86	-1.9
3,111,501	+		DDA3937_RS13665	0.87	+1.3
3,111,501	+		DDA3937_RS13665	0.87	-2.0
3,111,501	+		DDA3937_RS13665	0.87	-1.7
3,111,501	+		DDA3937_RS13665	0.87	-1.7
3,111,501	+		DDA3937_RS13665	0.87	-0.3
3,111,501	+		DDA3937_RS13665	0.87	-1.6
3,111,502	-		DDA3937_RS13665	0.87	-0.8
3,111,502	-		DDA3937_RS13665	0.87	-2.4
3,111,502	-		DDA3937_RS13665	0.87	-0.2
3,111,502	-		DDA3937_RS13665	0.87	-1.9
3,111,506	-		DDA3937_RS13665	0.87	-2.3
3,111,525	+		DDA3937_RS13665	0.88	+0.3
3,111,526	-		DDA3937_RS13665	0.88	-0.6
3,111,526	-		DDA3937_RS13665	0.88	+0.4
3,111,561	+		DDA3937_RS13665	0.89	-1.3
3,111,700	+				-0.2
3,111,700	+				+2.4
3,111,701	-				+0.7
3,111,710	+				+0.5
3,111,711	-				+0.4
3,111,741	+				-1.3
3,111,836	+				+0.1
3,111,840	+				-1.3
3,111,841	-				-0.3
3,111,841	-				-0.2
3,111,867	+				-1.5
3,111,874	+				-1.2
3,111,874	+				-1.9
3,111,874	+				-1.2
3,111,875	-				+0.2
3,111,875	-				-0.2
3,111,875	-				+0.5
3,111,875	-				-1.6
3,111,875	-				-0.5
3,111,879	-				-3.5
3,111,924	+				-2.2
3,111,926	+				-0.7
3,111,926	+				+2.0
3,111,926	+				-0.3
3,111,926	+				+2.0
3,111,926	+				-0.0
3,111,926	+				+1.0
3,111,926	+				+1.1
3,111,927	-				+1.8
3,111,927	-				+1.9
3,111,927	-				-0.9
3,111,927	-				-1.0
3,111,927	-				-1.0
3,111,934	+				+1.8
3,111,934	+				+0.7
3,111,944	+				+1.1
3,111,945	-				+1.3
3,111,945	-				+2.5
3,111,949	+				-2.0
3,111,949	+				-0.7
3,111,949	+				+0.1
3,111,950	-				+0.6
3,111,950	-				+1.2
3,111,950	-				-0.2
3,111,950	-				-2.6
3,111,969	+				-1.0
3,111,969	+				+1.1
3,111,969	+				-2.5
3,111,969	+				+0.9
3,111,969	+				+2.1
3,111,969	+				-1.5
3,111,970	-				-0.1
3,111,970	-				+1.2
3,111,970	-				-2.1
3,111,970	-				-2.2
3,111,970	-				-1.7
3,111,970	-				+1.6
3,111,970	-				-1.7
3,112,018	+				+0.6
3,112,019	-				-0.3
3,112,019	-				+0.2
3,112,019	-				+1.0
3,112,067	-				-2.3
3,112,082	-				-1.8
3,112,082	-				+0.0
3,112,082	-				-2.9
3,112,082	-				+1.0
3,112,109	+				-0.3
3,112,109	+				-1.2
3,112,110	-				+0.3
3,112,117	+				-0.7
3,112,118	-				-2.2
3,112,118	-				-0.2
3,112,118	-				+0.3
3,112,118	-				+0.6
3,112,118	-				+2.0
3,112,118	-				-0.7
3,112,143	+				-0.3
3,112,143	+				-0.3
3,112,143	+				-0.1
3,112,143	+				+2.4
3,112,143	+				-0.4
3,112,143	+				-1.5
3,112,143	+				-0.6
3,112,144	-				-1.7
3,112,144	-				-3.6
3,112,144	-				-3.2
3,112,144	-				-3.1
3,112,144	-				+1.7
3,112,144	-				+0.1
3,112,144	-				-0.3
3,112,145	+				-0.5
3,112,145	+				-2.6
3,112,145	+				+1.3
3,112,145	+				+0.8
3,112,145	+				-1.3
3,112,145	+				-1.7
3,112,145	+				+1.0
3,112,145	+				-2.6
3,112,146	-				-1.3
3,112,146	-				-0.9
3,112,146	-				-1.7
3,112,146	-				-0.8
3,112,146	-				+2.0
3,112,146	-				-1.2
3,112,146	-				+2.9
3,112,212	+				-2.2
3,112,212	+				+1.0
3,112,215	+				-0.2
3,112,215	+				+2.4
3,112,215	+				+0.1
3,112,215	+				-0.8
3,112,216	-				-1.0
3,112,216	-				-0.5
3,112,234	+				-0.4
3,112,234	+				-0.5
3,112,234	+				-2.0
3,112,234	+				-2.0
3,112,235	-				+0.8
3,112,235	-				+1.3
3,112,249	+				-0.7
3,112,250	-				-3.2
3,112,252	+				-0.7
3,112,252	+				+0.7
3,112,253	-				-2.5
3,112,260	+				-1.2
3,112,260	+				-0.7
3,112,260	+				-0.2
3,112,261	-				+0.1
3,112,261	-				-2.4
3,112,261	-				-0.8
3,112,261	-				-1.8
3,112,291	+				-1.2
3,112,367	+		DDA3937_RS13670	0.15	-1.6
3,112,367	+		DDA3937_RS13670	0.15	-0.6
3,112,512	+		DDA3937_RS13670	0.25	-1.0
3,112,513	-		DDA3937_RS13670	0.25	-0.7
3,112,524	+		DDA3937_RS13670	0.26	+2.6
3,112,545	+		DDA3937_RS13670	0.27	-0.7
3,112,570	+		DDA3937_RS13670	0.29	-1.0
3,112,588	+		DDA3937_RS13670	0.30	-0.7
3,112,588	+		DDA3937_RS13670	0.30	-2.2
3,112,589	-		DDA3937_RS13670	0.30	-2.2
3,112,589	-		DDA3937_RS13670	0.30	-1.8
3,112,589	-		DDA3937_RS13670	0.30	-1.5
3,112,635	+		DDA3937_RS13670	0.33	+1.0
3,112,635	+		DDA3937_RS13670	0.33	-1.0
3,112,636	-		DDA3937_RS13670	0.34	+1.0
3,112,682	+		DDA3937_RS13670	0.37	-1.1
3,112,683	-		DDA3937_RS13670	0.37	+0.9
3,112,753	+		DDA3937_RS13670	0.42	+1.1
3,112,753	+		DDA3937_RS13670	0.42	-0.1
3,112,754	-		DDA3937_RS13670	0.42	-2.6
3,112,754	-		DDA3937_RS13670	0.42	-0.9
3,112,754	-		DDA3937_RS13670	0.42	-2.3