Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13655

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,105,832	-				-1.7
3,105,836	+				-1.7
3,105,901	-				+0.1
3,105,964	+				-2.5
3,106,118	+				-1.8
3,106,119	-				-1.0
3,106,140	-				-0.5
3,106,155	+				-2.0
3,106,156	-				-2.7
3,106,160	-				+0.3
3,106,242	-		DDA3937_RS13650	0.13	+2.6
3,106,257	-		DDA3937_RS13650	0.16	-1.5
3,106,262	+		DDA3937_RS13650	0.17	-1.1
3,106,302	+		DDA3937_RS13650	0.24	-0.7
3,106,304	+		DDA3937_RS13650	0.25	-1.0
3,106,304	+		DDA3937_RS13650	0.25	-1.8
3,106,304	+		DDA3937_RS13650	0.25	-2.2
3,106,308	+		DDA3937_RS13650	0.25	-1.5
3,106,308	+		DDA3937_RS13650	0.25	-1.8
3,106,317	-		DDA3937_RS13650	0.27	-0.8
3,106,330	-		DDA3937_RS13650	0.29	-0.0
3,106,336	-		DDA3937_RS13650	0.31	-0.3
3,106,421	+		DDA3937_RS13650	0.46	+0.3
3,106,428	+		DDA3937_RS13650	0.48	+2.8
3,106,442	+		DDA3937_RS13650	0.50	-1.0
3,106,442	+		DDA3937_RS13650	0.50	-2.2
3,106,443	-		DDA3937_RS13650	0.50	+0.6
3,106,446	+		DDA3937_RS13650	0.51	-0.7
3,106,446	+				-0.7
3,106,447	-		DDA3937_RS13650	0.51	-0.7
3,106,511	+		DDA3937_RS13650	0.63	-1.7
3,106,531	+		DDA3937_RS13650	0.66	+1.5
3,106,586	-		DDA3937_RS13650	0.77	+1.4
3,106,619	-		DDA3937_RS13650	0.83	-2.5
3,106,635	+		DDA3937_RS13650	0.86	-2.4
3,106,635	+		DDA3937_RS13650	0.86	-1.9
3,106,636	-		DDA3937_RS13650	0.86	-0.7
3,106,741	+				-0.9
3,106,743	+				-2.5
3,106,746	-				-1.5
3,106,915	-		DDA3937_RS13655	0.12	-0.6
3,106,965	+		DDA3937_RS13655	0.19	-2.2
3,106,965	+		DDA3937_RS13655	0.19	+1.3
3,106,966	-		DDA3937_RS13655	0.19	-2.6
3,107,012	-		DDA3937_RS13655	0.25	-0.9
3,107,024	-		DDA3937_RS13655	0.27	+1.9
3,107,121	+		DDA3937_RS13655	0.40	+1.0
3,107,129	-		DDA3937_RS13655	0.41	-0.8
3,107,129	-		DDA3937_RS13655	0.41	-1.0
3,107,152	+		DDA3937_RS13655	0.44	-0.7
3,107,206	+		DDA3937_RS13655	0.52	-2.3
3,107,207	-		DDA3937_RS13655	0.52	-0.3
3,107,221	+		DDA3937_RS13655	0.54	+0.2
3,107,248	+		DDA3937_RS13655	0.58	-2.8
3,107,249	-		DDA3937_RS13655	0.58	-0.5
3,107,249	-		DDA3937_RS13655	0.58	-1.6
3,107,305	+		DDA3937_RS13655	0.66	-2.2
3,107,306	-		DDA3937_RS13655	0.66	-2.8
3,107,306	-		DDA3937_RS13655	0.66	-2.5
3,107,333	+		DDA3937_RS13655	0.69	-1.0
3,107,334	-		DDA3937_RS13655	0.70	-2.3
3,107,353	+		DDA3937_RS13655	0.72	-1.5
3,107,353	+		DDA3937_RS13655	0.72	-2.0
3,107,354	-		DDA3937_RS13655	0.72	-2.8
3,107,384	+		DDA3937_RS13655	0.76	-0.4
3,107,384	+				+0.3
3,107,385	-		DDA3937_RS13655	0.77	+0.4
3,107,431	+		DDA3937_RS13655	0.83	+0.6
3,107,440	+		DDA3937_RS13655	0.84	-1.9
3,107,440	+		DDA3937_RS13655	0.84	+1.7
3,107,441	-		DDA3937_RS13655	0.84	+0.5
3,107,441	-		DDA3937_RS13655	0.84	-0.8
3,107,441	-		DDA3937_RS13655	0.84	+1.0
3,107,441	-		DDA3937_RS13655	0.84	-2.3
3,107,441	-		DDA3937_RS13655	0.84	-0.9
3,107,441	-		DDA3937_RS13655	0.84	+0.9
3,107,442	+		DDA3937_RS13655	0.84	-0.7
3,107,442	+		DDA3937_RS13655	0.84	-3.2
3,107,442	+		DDA3937_RS13655	0.84	-0.8
3,107,442	+		DDA3937_RS13655	0.84	-0.3
3,107,442	+		DDA3937_RS13655	0.84	+0.6
3,107,442	+		DDA3937_RS13655	0.84	-0.3
3,107,442	+		DDA3937_RS13655	0.84	+0.7
3,107,442	+		DDA3937_RS13655	0.84	+1.0
3,107,442	+		DDA3937_RS13655	0.84	-0.5
3,107,442	+		DDA3937_RS13655	0.84	+0.5
3,107,443	-		DDA3937_RS13655	0.85	-1.3
3,107,443	-		DDA3937_RS13655	0.85	-0.2
3,107,443	-		DDA3937_RS13655	0.85	-1.5
3,107,443	-		DDA3937_RS13655	0.85	-1.4
3,107,443	-		DDA3937_RS13655	0.85	+1.5
3,107,443	-		DDA3937_RS13655	0.85	-1.9
3,107,450	-		DDA3937_RS13655	0.86	-0.9
3,107,554	+				+0.3
3,107,554	+				-1.3
3,107,554	+				-2.7
3,107,554	+				-0.7
3,107,555	-				-0.7
3,107,555	-				+0.7
3,107,555	-				-0.7
3,107,555	-				-2.3
3,107,562	-				-1.0
3,107,590	+				+0.8
3,107,624	+				-1.0
3,107,624	+				-0.7
3,107,624	+				-0.4
3,107,624	+				-0.9
3,107,625	-				-0.4
3,107,625	-				-3.1
3,107,625	-				-2.3
3,107,628	+				-1.7
3,107,657	+				-1.7
3,107,657	+				+1.6
3,107,658	-				-0.3
3,107,693	+				-2.4
3,107,693	+				-3.3
3,107,693	+				-0.6
3,107,693	+				-2.5
3,107,693	+				+0.9
3,107,693	+				-0.9
3,107,693	+				-0.5
3,107,693	+				-1.0
3,107,693	+				+1.2
3,107,693	+				-0.3
3,107,693	+				+0.7
3,107,693	+				-1.3
3,107,694	-				+1.2
3,107,694	-				-0.0
3,107,694	-				-0.5
3,107,694	-				-1.3
3,107,694	-				-2.9
3,107,694	-				+2.4
3,107,694	-				+3.3
3,107,694	-				-1.0
3,107,700	-				+1.3
3,107,745	+				+0.8
3,107,746	-				-1.3
3,107,748	+				-1.7
3,107,748	+				+1.4
3,107,748	+				-1.9
3,107,749	-				-2.5
3,107,749	-				-2.9
3,107,749	-				-0.1
3,107,749	-				-3.5
3,107,749	-				-3.2
3,107,768	+				-1.9
3,107,768	+				-2.7
3,107,783	+				-1.3
3,107,784	-				-1.1
3,107,784	-				+0.4
3,107,784	-				+0.2
3,107,787	-				+1.3
3,107,787	-				+0.4
3,107,822	-				+2.7
3,107,822	-				+0.4
3,107,822	-				-1.5
3,107,855	+				+1.9
3,107,868	+				-2.8
3,107,869	-				+0.1
3,107,872	+				+3.2
3,107,872	+				-0.5
3,107,873	-				-0.5
3,107,873	-				-2.3
3,107,892	-				-0.1
3,107,892	-				-0.9
3,107,978	+		DDA3937_RS13660	0.13	+0.7
3,107,979	-		DDA3937_RS13660	0.13	-2.0
3,108,034	+		DDA3937_RS13660	0.17	-0.4
3,108,078	+		DDA3937_RS13660	0.21	-1.9
3,108,078	+		DDA3937_RS13660	0.21	+0.1
3,108,079	-		DDA3937_RS13660	0.21	+1.7
3,108,155	-		DDA3937_RS13660	0.27	-2.2
3,108,211	+		DDA3937_RS13660	0.31	-1.7
3,108,212	-		DDA3937_RS13660	0.31	-1.1
3,108,251	-		DDA3937_RS13660	0.34	-3.8
3,108,261	+		DDA3937_RS13660	0.35	+1.0
3,108,262	-		DDA3937_RS13660	0.35	-2.7
3,108,278	-		DDA3937_RS13660	0.36	-0.1
3,108,278	-		DDA3937_RS13660	0.36	+0.6
3,108,278	-		DDA3937_RS13660	0.36	-3.6
3,108,341	+		DDA3937_RS13660	0.41	-1.7
3,108,350	-		DDA3937_RS13660	0.42	+0.9
3,108,385	+		DDA3937_RS13660	0.45	-1.5
3,108,385	+		DDA3937_RS13660	0.45	-1.0
3,108,386	-		DDA3937_RS13660	0.45	-2.3
3,108,386	-		DDA3937_RS13660	0.45	-0.7
3,108,393	+		DDA3937_RS13660	0.45	-0.5
3,108,393	+		DDA3937_RS13660	0.45	-0.5
3,108,393	+		DDA3937_RS13660	0.45	-0.2
3,108,394	-		DDA3937_RS13660	0.45	+1.1
3,108,394	-		DDA3937_RS13660	0.45	-1.5
3,108,409	+		DDA3937_RS13660	0.47	-1.7
3,108,451	+				-0.3
3,108,512	+		DDA3937_RS13660	0.55	+1.2
3,108,512	+		DDA3937_RS13660	0.55	+2.9
3,108,512	+		DDA3937_RS13660	0.55	+0.3