Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13535

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,081,715	+		DDA3937_RS13530	0.70	-1.5
3,081,715	+		DDA3937_RS13530	0.70	+0.1
3,081,715	+		DDA3937_RS13530	0.70	-1.3
3,081,715	+		DDA3937_RS13530	0.70	-1.9
3,081,715	+		DDA3937_RS13530	0.70	+0.5
3,081,715	+		DDA3937_RS13530	0.70	-0.7
3,081,716	-		DDA3937_RS13530	0.70	-0.3
3,081,716	-		DDA3937_RS13530	0.70	-0.7
3,081,716	-		DDA3937_RS13530	0.70	-2.2
3,081,765	+		DDA3937_RS13530	0.75	+0.6
3,081,765	+		DDA3937_RS13530	0.75	-3.9
3,081,819	+		DDA3937_RS13530	0.82	-1.4
3,081,820	-		DDA3937_RS13530	0.82	+0.4
3,081,820	-		DDA3937_RS13530	0.82	-0.3
3,081,820	-		DDA3937_RS13530	0.82	-0.1
3,081,820	-		DDA3937_RS13530	0.82	-2.2
3,081,835	+		DDA3937_RS13530	0.83	-0.5
3,081,835	+		DDA3937_RS13530	0.83	-1.9
3,081,836	-		DDA3937_RS13530	0.84	+2.4
3,081,867	+				-0.7
3,081,868	-		DDA3937_RS13530	0.87	+0.2
3,081,871	+		DDA3937_RS13530	0.88	-0.7
3,081,871	+		DDA3937_RS13530	0.88	+1.3
3,081,871	+		DDA3937_RS13530	0.88	-0.1
3,081,871	+		DDA3937_RS13530	0.88	-2.0
3,081,872	-		DDA3937_RS13530	0.88	-1.5
3,081,872	-		DDA3937_RS13530	0.88	+1.1
3,081,872	-		DDA3937_RS13530	0.88	+1.0
3,081,872	-		DDA3937_RS13530	0.88	-1.7
3,081,872	-		DDA3937_RS13530	0.88	-2.3
3,081,932	+				-2.5
3,081,937	+				-1.5
3,081,937	+				-0.3
3,081,938	-				-0.2
3,081,943	+				-1.0
3,081,943	+				+0.4
3,081,944	-				+0.1
3,081,944	-				-1.0
3,081,970	+				-0.5
3,081,970	+				-2.0
3,081,980	-				+0.6
3,081,980	-				+0.8
3,082,038	-				-0.7
3,082,038	-				-3.3
3,082,039	+				-0.3
3,082,039	+				-1.5
3,082,039	+				-2.6
3,082,039	+				-1.1
3,082,039	+				-1.5
3,082,039	+				-0.9
3,082,039	+				+0.9
3,082,039	+				-1.9
3,082,039	+				-1.0
3,082,040	-				-1.0
3,082,040	-				-0.7
3,082,040	-				-2.4
3,082,040	-				-0.3
3,082,040	-				-3.5
3,082,040	-				+1.3
3,082,040	-				+2.5
3,082,040	-				-1.5
3,082,040	-				+1.1
3,082,043	+				+0.3
3,082,044	-				+1.5
3,082,047	-				+1.0
3,082,062	+				-0.3
3,082,177	-				-2.5
3,082,177	-				-2.4
3,082,177	-				-1.0
3,082,239	+				-1.1
3,082,239	+				+0.7
3,082,239	+				-0.5
3,082,239	+				-0.3
3,082,240	-				-2.6
3,082,240	-				-0.7
3,082,240	-				-0.8
3,082,240	-				-0.3
3,082,241	+				-1.0
3,082,252	+				-3.9
3,082,252	+				-2.4
3,082,252	+				-1.7
3,082,253	-				+2.6
3,082,258	+				-1.3
3,082,258	+				-2.1
3,082,258	+				+0.9
3,082,259	-				+1.5
3,082,259	-				+1.4
3,082,259	-				+0.5
3,082,259	-				-3.3
3,082,260	+				-1.9
3,082,260	+				-2.0
3,082,260	+				-3.1
3,082,261	-				+0.9
3,082,261	-				+0.5
3,082,261	-				+0.7
3,082,261	-				-2.4
3,082,261	-				+0.8
3,082,261	-				+0.4
3,082,261	-				-0.0
3,082,294	+				-0.7
3,082,303	-				-1.9
3,082,303	-				+1.3
3,082,332	-				-2.7
3,082,339	+				-1.9
3,082,339	+				-0.7
3,082,339	+				-1.5
3,082,340	-				+1.7
3,082,340	-				-1.7
3,082,340	-				+0.3
3,082,351	+				-1.3
3,082,351	+				-1.3
3,082,351	+				+1.3
3,082,352	-				-0.3
3,082,352	-				-0.7
3,082,352	-				+0.5
3,082,352	-				-1.7
3,082,352	-				+0.3
3,082,352	-				-0.7
3,082,352	-				-1.7
3,082,352	-				+0.9
3,082,352	-				+0.3
3,082,352	-				-1.0
3,082,355	+				-1.0
3,082,355	+				-2.7
3,082,356	-				-0.3
3,082,356	-				-1.9
3,082,356	-				-1.5
3,082,476	-				+0.3
3,082,476	-				+1.5
3,082,504	-				+0.3
3,082,507	+				+0.3
3,082,523	+				+1.0
3,082,524	-				-0.5
3,082,567	+				+0.7
3,082,570	+				+0.7
3,082,588	+				-1.3
3,082,625	+				-1.5
3,082,625	+				-0.2
3,082,626	-				-2.1
3,082,626	-				+0.2
3,082,640	+				+0.0
3,082,662	+				-0.2
3,082,662	+				+0.7
3,082,663	-				-0.9
3,082,707	+				-1.3
3,082,735	+				-0.3
3,082,735	+				-1.9
3,082,736	-				-0.0
3,082,736	-				+1.2
3,083,105	+		DDA3937_RS13535	0.23	+0.3
3,083,105	+		DDA3937_RS13535	0.23	-1.7
3,083,106	-		DDA3937_RS13535	0.24	-0.2
3,083,130	-		DDA3937_RS13535	0.25	+0.7
3,083,152	+		DDA3937_RS13535	0.26	-2.0
3,083,191	+		DDA3937_RS13535	0.29	+2.5
3,083,191	+		DDA3937_RS13535	0.29	-2.5
3,083,191	+		DDA3937_RS13535	0.29	-2.5
3,083,191	+		DDA3937_RS13535	0.29	+1.6
3,083,191	+		DDA3937_RS13535	0.29	-4.0
3,083,192	-		DDA3937_RS13535	0.29	-1.8
3,083,192	-		DDA3937_RS13535	0.29	+0.6
3,083,195	+		DDA3937_RS13535	0.29	+1.5
3,083,195	+		DDA3937_RS13535	0.29	+0.9
3,083,335	+		DDA3937_RS13535	0.37	+0.6
3,083,335	+		DDA3937_RS13535	0.37	-2.0
3,083,336	-		DDA3937_RS13535	0.37	-0.3
3,083,347	+		DDA3937_RS13535	0.38	-1.5
3,083,347	+		DDA3937_RS13535	0.38	+0.1
3,083,348	-		DDA3937_RS13535	0.38	+0.1
3,083,348	-		DDA3937_RS13535	0.38	-0.9
3,083,348	-		DDA3937_RS13535	0.38	+0.3
3,083,380	+		DDA3937_RS13535	0.40	-1.2
3,083,479	+		DDA3937_RS13535	0.45	+1.8
3,083,480	-		DDA3937_RS13535	0.46	-2.3
3,083,540	-		DDA3937_RS13535	0.49	-0.2
3,083,540	-		DDA3937_RS13535	0.49	-0.1
3,083,569	+		DDA3937_RS13535	0.51	-1.2
3,083,571	+		DDA3937_RS13535	0.51	-2.3
3,083,571	+		DDA3937_RS13535	0.51	+0.8
3,083,572	-		DDA3937_RS13535	0.51	-3.4
3,083,572	-		DDA3937_RS13535	0.51	-3.3
3,083,572	-		DDA3937_RS13535	0.51	+0.6
3,083,720	-		DDA3937_RS13535	0.60	+0.2
3,083,720	-		DDA3937_RS13535	0.60	-2.6
3,083,729	-		DDA3937_RS13535	0.60	-2.3
3,083,735	-		DDA3937_RS13535	0.60	+0.3
3,083,735	-		DDA3937_RS13535	0.60	-1.1
3,083,750	-		DDA3937_RS13535	0.61	-0.4
3,083,826	-		DDA3937_RS13535	0.66	+0.9
3,083,871	+		DDA3937_RS13535	0.68	-0.3
3,083,872	-		DDA3937_RS13535	0.69	+0.8
3,083,883	+		DDA3937_RS13535	0.69	-2.3
3,083,896	-		DDA3937_RS13535	0.70	-1.1
3,083,901	+		DDA3937_RS13535	0.70	-0.3
3,083,902	-		DDA3937_RS13535	0.70	-2.1
3,083,905	-		DDA3937_RS13535	0.70	-0.8
3,083,905	-		DDA3937_RS13535	0.70	-0.9
3,083,997	-		DDA3937_RS13535	0.76	+1.3
3,084,018	+		DDA3937_RS13535	0.77	-0.7
3,084,018	+		DDA3937_RS13535	0.77	-1.6
3,084,018	+		DDA3937_RS13535	0.77	+0.8
3,084,019	-		DDA3937_RS13535	0.77	-1.7
3,084,019	-		DDA3937_RS13535	0.77	-1.0
3,084,041	+		DDA3937_RS13535	0.78	-2.4
3,084,065	-		DDA3937_RS13535	0.80	+1.3
3,084,081	+		DDA3937_RS13535	0.81	-2.7
3,084,081	+		DDA3937_RS13535	0.81	-1.5
3,084,081	+				-0.3
3,084,227	+		DDA3937_RS13535	0.89	-0.7
3,084,228	-		DDA3937_RS13535	0.89	+0.3
3,084,231	+		DDA3937_RS13535	0.90	-0.9
3,084,232	-		DDA3937_RS13535	0.90	-1.3
3,084,241	+				-1.0
3,084,241	+				-0.7
3,084,272	-				-1.3
3,084,272	-				+2.2
3,084,293	-				-1.9
3,084,371	-				-1.3
3,084,406	+				+1.8
3,084,407	-				-0.1
3,084,407	-				+1.7
3,084,409	+				+1.6
3,084,409	+				-1.9
3,084,409	+				+1.7
3,084,420	-				-2.1
3,084,420	-				+2.3
3,084,479	-				-2.5
3,084,523	-				+1.2
3,084,523	-				-2.4
3,084,526	-				-0.3
3,084,572	+				-1.9
3,084,572	+				-2.7
3,084,572	+				-2.1
3,084,572	+				-1.7
3,084,601	+		DDA3937_RS13540	0.15	-0.9
3,084,601	+		DDA3937_RS13540	0.15	-0.4
3,084,601	+		DDA3937_RS13540	0.15	+2.2
3,084,601	+		DDA3937_RS13540	0.15	-1.3
3,084,602	-		DDA3937_RS13540	0.16	+1.8
3,084,602	-		DDA3937_RS13540	0.16	+1.3
3,084,602	-		DDA3937_RS13540	0.16	+1.3
3,084,602	-		DDA3937_RS13540	0.16	-0.3
3,084,602	-		DDA3937_RS13540	0.16	-0.1
3,084,602	-		DDA3937_RS13540	0.16	+1.0
3,084,602	-		DDA3937_RS13540	0.16	+0.5
3,084,602	-		DDA3937_RS13540	0.16	+0.9
3,084,634	-		DDA3937_RS13540	0.22	+0.7
3,084,725	-		DDA3937_RS13540	0.40	-2.0
3,084,766	+		DDA3937_RS13540	0.49	+0.8
3,084,766	+		DDA3937_RS13540	0.49	-1.5
3,084,767	-		DDA3937_RS13540	0.49	-0.7
3,084,777	+		DDA3937_RS13540	0.51	-0.3
3,084,778	-		DDA3937_RS13540	0.51	+2.6
3,084,802	+		DDA3937_RS13540	0.56	-0.7
3,084,857	-		DDA3937_RS13540	0.67	+3.5
3,084,859	+		DDA3937_RS13540	0.67	-0.7
3,084,859	+		DDA3937_RS13540	0.67	-0.7
3,084,925	+		DDA3937_RS13540	0.81	-2.0
3,084,936	+		DDA3937_RS13540	0.83	+0.2
3,084,937	-		DDA3937_RS13540	0.83	-0.1
3,084,937	-		DDA3937_RS13540	0.83	-0.0
3,084,977	+				-1.0
3,084,977	+				-0.2
3,084,977	+				+1.1
3,084,977	+				-1.0
3,084,978	-				+2.8
3,084,978	-				-1.3
3,084,978	-				-1.2
3,084,978	-				+0.3
3,084,978	-				-0.8
3,084,978	-				+0.7
3,084,978	-				+0.3
3,085,034	+				+1.8
3,085,035	-				-0.5
3,085,039	+				-0.7
3,085,039	+				-1.9
3,085,039	+				-3.1
3,085,039	+				-2.4
3,085,039	+				-0.7
3,085,039	+				-1.5
3,085,040	-				-0.3
3,085,040	-				+2.3
3,085,040	-				+0.2
3,085,042	-				-2.1
3,085,042	-				+1.0
3,085,042	-				+1.6
3,085,047	+				-0.2
3,085,047	+				-1.0
3,085,048	-				-0.5
3,085,048	-				+1.3
3,085,058	+				-0.3
3,085,058	+				-0.3
3,085,059	-				+1.3
3,085,059	-				-2.2
3,085,059	-				-3.2
3,085,130	-				+1.1
3,085,135	-				-1.9
3,085,181	+				-0.7
3,085,247	+				+0.2
3,085,248	-				-1.3
3,085,328	+		DDA3937_RS13545	0.13	+0.3
3,085,349	+		DDA3937_RS13545	0.14	-3.0
3,085,350	-		DDA3937_RS13545	0.15	+1.8
3,085,394	+		DDA3937_RS13545	0.17	+3.9
3,085,394	+		DDA3937_RS13545	0.17	+0.7
3,085,394	+		DDA3937_RS13545	0.17	-1.3
3,085,394	+		DDA3937_RS13545	0.17	-3.3
3,085,395	-		DDA3937_RS13545	0.17	+0.7