Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12735

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,896,172	+		DDA3937_RS12730	0.66	+0.5
2,896,172	+		DDA3937_RS12730	0.66	+1.9
2,896,172	+		DDA3937_RS12730	0.66	-0.7
2,896,172	+		DDA3937_RS12730	0.66	+0.8
2,896,172	+		DDA3937_RS12730	0.66	-0.7
2,896,172	+		DDA3937_RS12730	0.66	-1.9
2,896,180	-		DDA3937_RS12730	0.66	+2.1
2,896,185	+		DDA3937_RS12730	0.67	-0.7
2,896,327	-		DDA3937_RS12730	0.74	+0.1
2,896,328	+		DDA3937_RS12730	0.74	-1.0
2,896,329	-		DDA3937_RS12730	0.74	-2.7
2,896,329	-		DDA3937_RS12730	0.74	-0.3
2,896,341	+		DDA3937_RS12730	0.75	+1.0
2,896,352	+		DDA3937_RS12730	0.75	+1.6
2,896,352	+		DDA3937_RS12730	0.75	-1.7
2,896,353	-		DDA3937_RS12730	0.75	-1.2
2,896,353	-		DDA3937_RS12730	0.75	-0.4
2,896,387	-		DDA3937_RS12730	0.77	+0.7
2,896,388	+		DDA3937_RS12730	0.77	-0.4
2,896,389	-		DDA3937_RS12730	0.77	+3.2
2,896,389	-		DDA3937_RS12730	0.77	+0.3
2,896,485	+		DDA3937_RS12730	0.82	-1.3
2,896,486	-		DDA3937_RS12730	0.82	-2.0
2,896,489	+		DDA3937_RS12730	0.83	+3.9
2,896,489	+		DDA3937_RS12730	0.83	-3.2
2,896,490	-		DDA3937_RS12730	0.83	+0.7
2,896,490	-		DDA3937_RS12730	0.83	+1.3
2,896,490	-		DDA3937_RS12730	0.83	-2.0
2,896,490	-		DDA3937_RS12730	0.83	+0.7
2,896,666	-				-0.6
2,896,666	-				+1.2
2,896,707	+				-2.2
2,896,708	-				-0.3
2,896,708	-				+1.4
2,896,747	+				-1.0
2,896,748	-				-3.8
2,896,748	-				+0.3
2,896,748	-				+0.6
2,896,748	-				-0.0
2,896,756	-				-2.3
2,896,758	+				+0.3
2,896,758	+				-1.5
2,896,761	+				-1.5
2,896,762	-				-1.5
2,896,777	+				-1.7
2,896,777	+				+0.5
2,896,777	+				+0.8
2,896,778	-				-0.9
2,896,778	-				+1.3
2,896,822	+				-1.3
2,896,822	+				+1.1
2,896,822	+				-0.7
2,896,823	-				-2.4
2,896,823	-				+2.2
2,896,823	-				-0.7
2,896,873	-				+1.0
2,896,874	+				-2.0
2,896,874	+				-2.0
2,896,874	+				-2.5
2,896,874	+				-0.7
2,896,875	-				-1.0
2,896,875	-				-0.2
2,896,876	+				+1.3
2,896,876	+				-2.5
2,896,876	+				-2.4
2,896,876	+				-4.1
2,896,877	-				-0.7
2,896,877	-				-3.4
2,896,877	-				-1.4
2,896,877	-				-2.2
2,896,877	-				+0.1
2,896,877	-				+0.5
2,896,970	+				-0.9
2,896,989	+				+1.1
2,896,989	+				-1.3
2,896,989	+				+1.3
2,896,989	+				+0.1
2,896,989	+				+2.1
2,896,989	+				-1.0
2,896,990	-				-1.9
2,896,990	-				+1.1
2,896,990	-				-0.5
2,897,005	-				+0.7
2,897,005	-				+3.4
2,897,005	-				-1.7
2,897,037	-				-2.3
2,897,061	+				-1.2
2,897,114	+				-2.4
2,897,163	+				+0.6
2,897,196	+				+1.1
2,897,197	-				-0.3
2,897,197	-				+1.5
2,897,197	-				-1.9
2,897,198	+				-1.5
2,897,198	+				-0.8
2,897,199	-		DDA3937_RS12735	0.10	-2.4
2,897,199	-		DDA3937_RS12735	0.10	-2.2
2,897,204	+		DDA3937_RS12735	0.11	-1.2
2,897,205	-		DDA3937_RS12735	0.11	+2.0
2,897,214	+		DDA3937_RS12735	0.12	-2.3
2,897,214	+		DDA3937_RS12735	0.12	-0.2
2,897,247	-		DDA3937_RS12735	0.16	+1.1
2,897,257	-		DDA3937_RS12735	0.17	+0.8
2,897,320	+		DDA3937_RS12735	0.24	-1.0
2,897,320	+		DDA3937_RS12735	0.24	-1.1
2,897,321	-		DDA3937_RS12735	0.24	-0.9
2,897,363	+		DDA3937_RS12735	0.29	+0.7
2,897,364	-		DDA3937_RS12735	0.29	-1.8
2,897,364	-		DDA3937_RS12735	0.29	-0.7
2,897,364	-		DDA3937_RS12735	0.29	-0.7
2,897,364	-		DDA3937_RS12735	0.29	+2.9
2,897,384	+				+4.5
2,897,385	-		DDA3937_RS12735	0.32	+1.2
2,897,385	-		DDA3937_RS12735	0.32	+1.6
2,897,460	+		DDA3937_RS12735	0.41	+0.4
2,897,461	-		DDA3937_RS12735	0.41	+1.0
2,897,500	-		DDA3937_RS12735	0.45	+2.3
2,897,547	+		DDA3937_RS12735	0.51	-0.6
2,897,547	+		DDA3937_RS12735	0.51	+1.7
2,897,682	+		DDA3937_RS12735	0.67	-2.2
2,897,682	+		DDA3937_RS12735	0.67	-2.5
2,897,682	+		DDA3937_RS12735	0.67	-0.3
2,897,683	-		DDA3937_RS12735	0.67	+1.8
2,897,683	-		DDA3937_RS12735	0.67	-0.1
2,897,683	-		DDA3937_RS12735	0.67	-0.3
2,897,684	+		DDA3937_RS12735	0.67	-1.1
2,897,684	+				+1.3
2,897,684	+		DDA3937_RS12735	0.67	+0.3
2,897,684	+		DDA3937_RS12735	0.67	-2.4
2,897,684	+		DDA3937_RS12735	0.67	+0.3
2,897,684	+		DDA3937_RS12735	0.67	+0.5
2,897,684	+		DDA3937_RS12735	0.67	-1.3
2,897,684	+		DDA3937_RS12735	0.67	-1.0
2,897,684	+		DDA3937_RS12735	0.67	-1.7
2,897,684	+		DDA3937_RS12735	0.67	-1.0
2,897,684	+		DDA3937_RS12735	0.67	-0.0
2,897,684	+		DDA3937_RS12735	0.67	-1.5
2,897,684	+		DDA3937_RS12735	0.67	-0.1
2,897,684	+		DDA3937_RS12735	0.67	-0.8
2,897,685	-		DDA3937_RS12735	0.67	+2.5
2,897,685	-		DDA3937_RS12735	0.67	+1.6
2,897,685	-		DDA3937_RS12735	0.67	-3.2
2,897,685	-		DDA3937_RS12735	0.67	+1.0
2,897,685	-		DDA3937_RS12735	0.67	+0.3
2,897,685	-		DDA3937_RS12735	0.67	+0.5
2,897,685	-		DDA3937_RS12735	0.67	-0.7
2,897,685	-		DDA3937_RS12735	0.67	+2.8
2,897,685	-		DDA3937_RS12735	0.67	+1.3
2,897,685	-		DDA3937_RS12735	0.67	+0.3
2,897,755	+		DDA3937_RS12735	0.75	-2.5
2,897,756	-		DDA3937_RS12735	0.75	-1.6
2,897,756	-		DDA3937_RS12735	0.75	-0.6
2,897,907	+				-1.0
2,897,937	+				-0.7
2,897,937	+				+0.4
2,897,937	+				-1.0
2,897,937	+				-2.7
2,897,938	-				-2.2
2,897,938	-				-1.7
2,897,938	-				-0.1
2,897,947	+				+0.3
2,898,035	-				+1.6
2,898,040	+				-0.7
2,898,041	-				+0.9
2,898,041	-				-0.5
2,898,100	+				+0.6
2,898,107	+				-2.3
2,898,112	+				+0.3
2,898,112	+				-0.9
2,898,112	+				+0.2
2,898,137	+				-0.7
2,898,182	+				-0.9
2,898,182	+				-2.4
2,898,183	-				+0.8
2,898,193	+				-1.0
2,898,193	+				+1.1
2,898,193	+				-1.9
2,898,193	+				+1.4
2,898,194	-				+0.9
2,898,194	-				-1.3
2,898,196	+				-0.3
2,898,215	-				+1.4
2,898,215	-				-0.7
2,898,215	-				-2.7
2,898,256	+				+2.0
2,898,256	+				+1.4
2,898,262	+				+0.3
2,898,362	-				+2.9
2,898,362	-				+1.2
2,898,362	-				+0.2
2,898,377	-				+0.3
2,898,377	-				-1.3
2,898,377	-				-1.7
2,898,380	+				+2.9
2,898,380	+				+1.3
2,898,381	-				-3.3
2,898,383	-				-1.3
2,898,520	+				+0.3
2,898,520	+				+0.2
2,898,521	-				+1.3
2,898,521	-				+0.4
2,898,521	-				-2.1
2,898,521	-				+0.3
2,898,546	+				-1.0
2,898,546	+				-1.9
2,898,546	+				+0.2
2,898,546	+				+1.1
2,898,546	+				+0.4
2,898,546	+				-0.6
2,898,546	+				-0.7
2,898,546	+				+1.9
2,898,546	+				-0.3
2,898,546	+				-0.4
2,898,546	+				-0.8
2,898,546	+				-2.6
2,898,546	+				+0.6
2,898,547	-				+0.7
2,898,547	-				-0.5
2,898,547	-				+0.4
2,898,547	-				+2.5
2,898,547	-				-1.3
2,898,547	-				-1.0
2,898,547	-				+2.0
2,898,547	-				-1.5
2,898,547	-				+1.3
2,898,547	-				-0.6
2,898,547	-				+0.5
2,898,547	-				-0.5
2,898,547	-				-1.9
2,898,547	-				+2.0
2,898,547	-				-1.0
2,898,547	-				+1.4
2,898,548	+				-0.7
2,898,548	+				-0.7
2,898,548	+				-2.5
2,898,548	+				-1.7
2,898,548	+				+1.4
2,898,548	+				+1.1
2,898,548	+				-1.2
2,898,548	+				+1.9
2,898,548	+				-0.9
2,898,548	+				-1.5
2,898,548	+				+1.4
2,898,548	+				-0.4
2,898,548	+				-3.2
2,898,548	+				+0.6
2,898,548	+				+0.6
2,898,548	+				-0.3
2,898,548	+				-0.3
2,898,549	-				-1.9
2,898,549	-				-0.9
2,898,549	-				-2.2
2,898,549	-				+3.4
2,898,549	-				-1.0
2,898,549	-				-1.6
2,898,549	-				+2.1
2,898,549	-				+0.5
2,898,549	-				+0.7
2,898,549	-				+1.8
2,898,549	-				-0.2
2,898,549	-				+0.4
2,898,549	-				-0.5
2,898,549	-				-0.4
2,898,549	-				-1.7
2,898,549	-				+1.6
2,898,549	-				+0.3
2,898,549	-				+2.0
2,898,552	+				-0.7
2,898,552	+				-0.5
2,898,553	-				-0.4
2,898,553	-				-1.7
2,898,553	-				-1.0
2,898,577	+				-1.0
2,898,577	+				-1.3
2,898,577	+				-2.2
2,898,578	-				-1.3
2,898,578	-				-0.3
2,898,578	-				-0.3
2,898,629	-				+0.6
2,898,651	+				-1.0
2,898,651	+				-0.5
2,898,657	+				+1.3
2,898,658	-				+1.0
2,898,682	-				+0.9
2,898,775	+				-2.4
2,898,796	-				-2.0
2,898,796	-				+1.4
2,898,855	+		DDA3937_RS12740	0.14	+1.0
2,898,855	+		DDA3937_RS12740	0.14	+1.8
2,898,963	+		DDA3937_RS12740	0.22	+1.0
2,898,964	-		DDA3937_RS12740	0.22	-1.7
2,898,964	-		DDA3937_RS12740	0.22	-1.7
2,898,964	-		DDA3937_RS12740	0.22	+0.7