Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12330

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,803,564	+				-2.8
2,803,565	-				-0.5
2,803,603	+				-1.7
2,803,604	-				-1.0
2,803,689	+				-1.0
2,803,760	+				-1.0
2,803,793	+				-0.7
2,803,803	-				-0.7
2,803,807	+				+1.5
2,803,850	+				-0.5
2,803,868	+				+1.7
2,803,868	+				-0.2
2,803,869	-				-3.2
2,803,873	+				-1.9
2,803,874	-				+0.3
2,803,880	-				+4.5
2,803,914	+				-1.2
2,803,914	+				+2.8
2,803,914	+				-2.0
2,803,966	+				-1.0
2,803,981	+				-2.8
2,803,986	+				+2.2
2,804,007	+				-1.7
2,804,109	+				-1.7
2,804,209	+				-0.5
2,804,209	+				+0.3
2,804,212	-				+0.0
2,804,212	-				-2.2
2,804,236	-				-1.3
2,804,304	+				-0.4
2,804,304	+				-0.2
2,804,304	+				-1.9
2,804,304	+				+0.6
2,804,305	-				+0.7
2,804,305	-				+1.0
2,804,306	+				+2.9
2,804,306	+				+0.3
2,804,307	-				-0.5
2,804,307	-				+1.1
2,804,309	-				-1.2
2,804,309	-				-1.3
2,804,316	+				-1.0
2,804,329	+				-1.0
2,804,329	+				-0.7
2,804,329	+				-0.3
2,804,330	-				-0.7
2,804,330	-				-0.4
2,804,330	-				+1.8
2,804,331	+				-2.4
2,804,331	+				-0.0
2,804,332	-				-0.7
2,804,332	-				-2.7
2,804,332	-				+1.3
2,804,336	-				+0.5
2,804,398	+				-1.9
2,804,398	+				-1.3
2,804,399	-				-2.1
2,804,399	-				-0.7
2,804,400	+				-2.4
2,804,400	+				+0.1
2,804,424	+				-1.7
2,804,441	+				-1.3
2,804,442	-				+0.0
2,804,475	+				-0.6
2,804,475	+				-0.7
2,804,475	+				+0.6
2,804,476	-				+1.0
2,804,476	-				-1.0
2,804,479	+				-0.7
2,804,479	+				-1.1
2,804,480	-				-0.1
2,804,480	-				+0.4
2,804,480	-				-0.8
2,804,485	+				+0.6
2,804,486	-				-2.0
2,804,492	-				+1.2
2,804,644	+		DDA3937_RS12330	0.11	-0.7
2,804,645	-		DDA3937_RS12330	0.11	+1.5
2,804,699	+		DDA3937_RS12330	0.17	-0.3
2,804,699	+		DDA3937_RS12330	0.17	-0.9
2,804,699	+		DDA3937_RS12330	0.17	+0.7
2,804,700	-		DDA3937_RS12330	0.17	-0.7
2,804,700	-				+0.3
2,804,700	-		DDA3937_RS12330	0.17	-1.4
2,804,700	-		DDA3937_RS12330	0.17	-1.7
2,804,817	-		DDA3937_RS12330	0.29	-2.4
2,804,840	+		DDA3937_RS12330	0.32	+0.8
2,804,841	-		DDA3937_RS12330	0.32	-0.3
2,804,841	-				-1.0
2,804,841	-		DDA3937_RS12330	0.32	-3.3
2,804,841	-		DDA3937_RS12330	0.32	+1.9
2,804,842	+		DDA3937_RS12330	0.32	+1.0
2,804,842	+		DDA3937_RS12330	0.32	+0.9
2,804,842	+		DDA3937_RS12330	0.32	+1.3
2,804,842	+		DDA3937_RS12330	0.32	-0.0
2,804,842	+		DDA3937_RS12330	0.32	-1.6
2,804,843	-		DDA3937_RS12330	0.32	-1.6
2,804,843	-		DDA3937_RS12330	0.32	-1.9
2,804,843	-		DDA3937_RS12330	0.32	-1.3
2,804,843	-		DDA3937_RS12330	0.32	+0.4
2,804,843	-		DDA3937_RS12330	0.32	-1.3
2,804,843	-		DDA3937_RS12330	0.32	+1.1
2,804,843	-		DDA3937_RS12330	0.32	-3.4
2,804,864	+		DDA3937_RS12330	0.34	+0.6
2,804,864	+		DDA3937_RS12330	0.34	+0.2
2,804,864	+		DDA3937_RS12330	0.34	-1.4
2,804,865	-		DDA3937_RS12330	0.34	-2.5
2,804,865	-		DDA3937_RS12330	0.34	+1.0
2,804,865	-		DDA3937_RS12330	0.34	-0.6
2,804,865	-		DDA3937_RS12330	0.34	-0.8
2,804,865	-		DDA3937_RS12330	0.34	-0.3
2,804,865	-		DDA3937_RS12330	0.34	-2.0
2,805,002	-		DDA3937_RS12330	0.49	-0.7
2,805,032	+		DDA3937_RS12330	0.52	-1.6
2,805,082	+		DDA3937_RS12330	0.57	-0.8
2,805,527	+				+2.5
2,805,527	+				-2.1
2,805,529	+				-1.9
2,805,529	+				+0.9
2,805,530	-				-2.0
2,805,530	-				-1.1
2,805,530	-				-0.7
2,805,530	-				-1.4
2,805,530	-				-1.7
2,805,614	+				-0.0
2,805,678	+				-1.7
2,805,679	-				-2.9
2,805,679	-				+2.2
2,805,688	-				-2.2
2,805,688	-				-2.6
2,805,695	-				-1.3
2,805,712	-				-2.7
2,805,712	-				-0.6
2,805,712	-				-1.3
2,805,719	+				-0.7
2,805,719	+				-1.0
2,805,719	+				-1.5
2,805,800	+				-3.0
2,805,890	-				-1.6
2,805,890	-				+0.7
2,805,890	-				-1.5
2,805,899	+				+1.7
2,805,899	+				-0.7
2,805,900	-				+0.2
2,806,021	+		DDA3937_RS12335	0.14	-1.0
2,806,022	-		DDA3937_RS12335	0.15	+1.1
2,806,057	+		DDA3937_RS12335	0.18	-3.0
2,806,057	+		DDA3937_RS12335	0.18	-0.1
2,806,057	+		DDA3937_RS12335	0.18	-1.4
2,806,058	-		DDA3937_RS12335	0.18	-0.9
2,806,058	-		DDA3937_RS12335	0.18	-1.3
2,806,058	-		DDA3937_RS12335	0.18	+1.1
2,806,058	-		DDA3937_RS12335	0.18	-1.5
2,806,058	-		DDA3937_RS12335	0.18	-1.0
2,806,058	-		DDA3937_RS12335	0.18	-2.9
2,806,059	+		DDA3937_RS12335	0.18	-0.1
2,806,059	+		DDA3937_RS12335	0.18	-1.5
2,806,059	+		DDA3937_RS12335	0.18	-1.0
2,806,059	+		DDA3937_RS12335	0.18	-1.9
2,806,059	+		DDA3937_RS12335	0.18	-1.7
2,806,059	+		DDA3937_RS12335	0.18	+0.6
2,806,059	+		DDA3937_RS12335	0.18	-1.7
2,806,059	+		DDA3937_RS12335	0.18	-1.5
2,806,060	-		DDA3937_RS12335	0.18	-2.8
2,806,060	-		DDA3937_RS12335	0.18	-3.1
2,806,060	-		DDA3937_RS12335	0.18	-1.0
2,806,060	-		DDA3937_RS12335	0.18	+3.1
2,806,060	-		DDA3937_RS12335	0.18	-0.9
2,806,060	-		DDA3937_RS12335	0.18	-3.9
2,806,060	-		DDA3937_RS12335	0.18	-2.3
2,806,263	+		DDA3937_RS12335	0.39	+0.1
2,806,263	+		DDA3937_RS12335	0.39	-0.2
2,806,264	-		DDA3937_RS12335	0.39	-1.0
2,806,264	-		DDA3937_RS12335	0.39	-2.0
2,806,264	-		DDA3937_RS12335	0.39	-4.0
2,806,271	+		DDA3937_RS12335	0.40	-0.1
2,806,271	+				-1.3
2,806,271	+		DDA3937_RS12335	0.40	-1.3
2,806,271	+		DDA3937_RS12335	0.40	+2.9
2,806,272	-		DDA3937_RS12335	0.40	+0.9