Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12145

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,756,464	-		DDA3937_RS12135	0.74	-0.9
2,756,464	-		DDA3937_RS12135	0.74	-1.7
2,756,464	-		DDA3937_RS12135	0.74	+0.9
2,756,474	+		DDA3937_RS12135	0.75	+3.2
2,756,474	+		DDA3937_RS12135	0.75	-1.5
2,756,474	+		DDA3937_RS12135	0.75	-2.5
2,756,475	-		DDA3937_RS12135	0.75	-0.3
2,756,475	-		DDA3937_RS12135	0.75	-0.1
2,756,605	+		DDA3937_RS12135	0.86	-2.5
2,756,622	+		DDA3937_RS12135	0.87	-1.7
2,756,622	+		DDA3937_RS12135	0.87	+2.3
2,756,622	+		DDA3937_RS12135	0.87	+1.5
2,756,623	-		DDA3937_RS12135	0.87	-1.3
2,756,623	-		DDA3937_RS12135	0.87	+2.0
2,756,683	+				-0.0
2,756,726	+				-0.7
2,756,739	-				+1.3
2,756,739	-				+0.1
2,756,823	+				-3.3
2,756,823	+				-1.0
2,756,823	+				+0.4
2,756,823	+				-2.4
2,756,823	+				+0.2
2,756,823	+				+0.8
2,756,823	+				-1.3
2,756,823	+				-0.3
2,756,823	+				-0.9
2,756,824	-				+0.5
2,756,824	-				+1.9
2,756,824	-				+3.0
2,756,824	-				+0.7
2,756,824	-				-1.9
2,756,824	-				+0.9
2,756,824	-				-0.3
2,756,824	-				+1.0
2,756,829	+				+2.6
2,756,842	+				+0.5
2,756,855	+				+0.8
2,756,855	+				-2.0
2,756,855	+				+0.3
2,756,855	+				-3.9
2,756,855	+				+0.5
2,756,855	+				+0.1
2,756,856	-				+0.1
2,756,856	-				-1.7
2,756,856	-				+1.7
2,756,856	-				+0.7
2,756,856	-				-2.5
2,756,856	-				-0.7
2,756,856	-				-1.7
2,756,856	-				-1.7
2,756,856	-				-0.3
2,756,856	-				-0.2
2,757,059	+				-0.7
2,757,060	-				-0.5
2,757,060	-				+1.7
2,757,201	+				-0.3
2,757,202	-				+0.2
2,757,204	+				-1.6
2,757,205	-				+0.8
2,757,231	-				+0.9
2,757,233	+				-1.3
2,757,233	+				+0.2
2,757,421	+				-0.9
2,757,421	+				-1.7
2,757,422	-				-0.7
2,757,542	+				-0.0
2,757,675	-		DDA3937_RS12145	0.16	-2.3
2,757,749	+		DDA3937_RS12145	0.22	-1.3
2,757,749	+		DDA3937_RS12145	0.22	+1.7
2,757,749	+		DDA3937_RS12145	0.22	-1.9
2,757,749	+		DDA3937_RS12145	0.22	+0.0
2,757,750	-		DDA3937_RS12145	0.22	-0.7
2,757,753	+		DDA3937_RS12145	0.22	+0.3
2,757,753	+		DDA3937_RS12145	0.22	-1.0
2,757,753	+		DDA3937_RS12145	0.22	-1.7
2,757,753	+		DDA3937_RS12145	0.22	+0.8
2,757,792	+		DDA3937_RS12145	0.25	-2.2
2,757,792	+		DDA3937_RS12145	0.25	+0.7
2,757,920	+		DDA3937_RS12145	0.35	-1.0
2,757,921	-		DDA3937_RS12145	0.35	-2.4
2,757,921	-		DDA3937_RS12145	0.35	+0.2
2,757,921	-		DDA3937_RS12145	0.35	+1.3
2,757,969	+		DDA3937_RS12145	0.39	+0.3
2,757,969	+		DDA3937_RS12145	0.39	+2.2
2,757,969	+		DDA3937_RS12145	0.39	+0.1
2,757,970	-		DDA3937_RS12145	0.39	+1.2
2,757,997	-		DDA3937_RS12145	0.41	-1.2
2,758,137	+		DDA3937_RS12145	0.51	-0.2
2,758,137	+		DDA3937_RS12145	0.51	-2.0
2,758,137	+		DDA3937_RS12145	0.51	+0.3
2,758,137	+		DDA3937_RS12145	0.51	-1.3
2,758,137	+		DDA3937_RS12145	0.51	-2.9
2,758,137	+		DDA3937_RS12145	0.51	-0.3
2,758,138	-		DDA3937_RS12145	0.52	-1.2
2,758,138	-		DDA3937_RS12145	0.52	-0.6
2,758,138	-				+1.9
2,758,138	-				+3.2
2,758,213	-		DDA3937_RS12145	0.57	-2.0
2,758,213	-		DDA3937_RS12145	0.57	+0.8
2,758,224	+		DDA3937_RS12145	0.58	-1.3
2,758,224	+		DDA3937_RS12145	0.58	-2.9
2,758,225	-		DDA3937_RS12145	0.58	+0.3
2,758,225	-		DDA3937_RS12145	0.58	+0.9
2,758,225	-		DDA3937_RS12145	0.58	-0.6
2,758,233	+		DDA3937_RS12145	0.59	-1.3
2,758,521	+		DDA3937_RS12145	0.81	+1.1
2,758,522	-		DDA3937_RS12145	0.81	-0.1
2,758,522	-		DDA3937_RS12145	0.81	-0.6
2,758,522	-		DDA3937_RS12145	0.81	+2.1
2,758,707	-				+0.3
2,758,707	-				-2.4
2,758,721	+				-1.0
2,758,721	+				-2.0
2,758,722	-				+0.7
2,758,725	+				+0.2
2,758,725	+				+1.0
2,758,725	+				-2.2
2,758,725	+				+2.4
2,758,725	+				-2.8
2,758,725	+				+0.0
2,758,725	+				+0.4
2,758,726	-				+3.6
2,758,726	-				+1.0
2,758,726	-				+0.0
2,758,726	-				+1.3
2,758,726	-				+1.6
2,758,746	+				+0.5
2,758,747	-				+0.3
2,758,747	-				-0.2
2,758,748	+				-0.0
2,758,809	+				-1.3
2,758,809	+				-1.7
2,758,809	+				+0.9
2,758,810	-				-0.4
2,758,810	-				-2.0
2,758,810	-				-1.2
2,758,810	-				-1.8
2,758,810	-				+0.4
2,758,810	-				-0.5
2,758,810	-				-1.2
2,758,810	-				+0.7
2,758,812	-				+1.2
2,758,812	-				-2.0
2,758,886	-				+0.3
2,758,920	+				+0.7
2,758,920	+				-1.5
2,758,921	-				-0.2
2,758,921	-				-1.6
2,758,953	+				-0.7
2,758,954	-				-3.3
2,758,954	-				+0.4
2,758,954	-				-1.5
2,758,954	-				-0.2
2,758,982	+				+1.5
2,758,982	+				-1.0
2,758,983	-				+1.0
2,758,983	-				-1.2
2,759,071	+				+4.3
2,759,071	+				+0.3
2,759,072	-				-0.8
2,759,076	+				-2.5
2,759,076	+				+1.0
2,759,076	+				-1.4
2,759,077	-				+2.5
2,759,077	-				-1.7
2,759,111	+				-1.5
2,759,111	+				-3.0
2,759,151	-				+0.3
2,759,151	-				+1.7
2,759,151	-				+1.6
2,759,218	+				-0.7
2,759,218	+				-0.5
2,759,219	-				+2.6
2,759,320	+		DDA3937_RS12150	0.13	-2.3
2,759,320	+		DDA3937_RS12150	0.13	-1.4
2,759,320	+		DDA3937_RS12150	0.13	-1.3
2,759,320	+		DDA3937_RS12150	0.13	-2.8
2,759,320	+				+0.3
2,759,320	+		DDA3937_RS12150	0.13	-2.6
2,759,320	+		DDA3937_RS12150	0.13	+2.5
2,759,320	+		DDA3937_RS12150	0.13	+0.1
2,759,321	-		DDA3937_RS12150	0.13	+0.8
2,759,321	-		DDA3937_RS12150	0.13	+1.2
2,759,321	-		DDA3937_RS12150	0.13	-1.7
2,759,321	-		DDA3937_RS12150	0.13	+0.3
2,759,321	-		DDA3937_RS12150	0.13	-2.1
2,759,324	+		DDA3937_RS12150	0.13	-1.7
2,759,324	+		DDA3937_RS12150	0.13	+0.9
2,759,324	+		DDA3937_RS12150	0.13	-1.2
2,759,325	-		DDA3937_RS12150	0.13	+2.4
2,759,325	-		DDA3937_RS12150	0.13	+0.4
2,759,325	-		DDA3937_RS12150	0.13	+0.5
2,759,325	-		DDA3937_RS12150	0.13	+0.6
2,759,361	-		DDA3937_RS12150	0.15	-0.2
2,759,482	-		DDA3937_RS12150	0.22	-1.9
2,759,482	-		DDA3937_RS12150	0.22	+0.3
2,759,544	-		DDA3937_RS12150	0.25	-0.7
2,759,548	+		DDA3937_RS12150	0.25	-0.1
2,759,548	+		DDA3937_RS12150	0.25	+0.5
2,759,564	+		DDA3937_RS12150	0.26	-1.2
2,759,564	+		DDA3937_RS12150	0.26	-1.9
2,759,564	+		DDA3937_RS12150	0.26	-2.0
2,759,565	-		DDA3937_RS12150	0.26	-0.4
2,759,569	+		DDA3937_RS12150	0.27	-0.7
2,759,569	+		DDA3937_RS12150	0.27	+0.4
2,759,610	+		DDA3937_RS12150	0.29	+0.9
2,759,623	-		DDA3937_RS12150	0.29	+1.1
2,759,623	-		DDA3937_RS12150	0.29	+0.6
2,759,623	-		DDA3937_RS12150	0.29	-1.0