Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS11170

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,539,044	+				+0.3
2,539,045	-				-1.3
2,539,070	-				-1.7
2,539,085	+				+0.0
2,539,086	-				+2.5
2,539,086	-				-0.7
2,539,182	-				-0.8
2,539,182	-				-0.6
2,539,290	+				-0.3
2,539,302	+				-1.0
2,539,360	+				-1.4
2,539,360	+				+2.9
2,539,360	+				+0.3
2,539,392	-				+0.3
2,539,441	+				-0.0
2,539,455	-				-0.3
2,539,455	-				-0.9
2,539,458	+				+2.8
2,539,459	-				-0.6
2,539,459	-				+1.8
2,539,548	+				+0.3
2,539,549	-				+0.3
2,539,574	+				+0.1
2,539,602	-				+0.8
2,539,605	+				-2.5
2,539,605	+				+0.2
2,539,605	+				+1.3
2,539,606	-				-2.9
2,539,606	-				-0.2
2,539,606	-				-1.6
2,539,655	+				-1.1
2,539,656	-				+1.7
2,539,656	-				-0.7
2,539,683	+				-1.5
2,539,683	+				-2.3
2,539,683	+				-0.7
2,539,729	+				+1.2
2,539,729	+				-1.5
2,539,729	+				+1.5
2,539,729	+				-1.5
2,539,766	-		DDA3937_RS11170	0.11	+1.0
2,539,766	-		DDA3937_RS11170	0.11	-1.7
2,539,766	-		DDA3937_RS11170	0.11	-0.7
2,539,814	-		DDA3937_RS11170	0.15	-1.0
2,539,983	+				-0.3
2,539,983	+		DDA3937_RS11170	0.29	-1.3
2,539,983	+		DDA3937_RS11170	0.29	-2.4
2,539,983	+		DDA3937_RS11170	0.29	-1.5
2,539,984	-		DDA3937_RS11170	0.29	+0.5
2,539,984	-		DDA3937_RS11170	0.29	-0.7
2,539,985	+		DDA3937_RS11170	0.29	-1.0
2,539,985	+		DDA3937_RS11170	0.29	-1.3
2,539,986	-		DDA3937_RS11170	0.29	-2.9
2,539,999	+		DDA3937_RS11170	0.30	-1.3
2,539,999	+		DDA3937_RS11170	0.30	-1.6
2,539,999	+		DDA3937_RS11170	0.30	-2.2
2,539,999	+		DDA3937_RS11170	0.30	+0.6
2,539,999	+		DDA3937_RS11170	0.30	+2.4
2,540,051	+		DDA3937_RS11170	0.34	-1.5
2,540,129	+		DDA3937_RS11170	0.40	-1.9
2,540,129	+		DDA3937_RS11170	0.40	-0.1
2,540,129	+		DDA3937_RS11170	0.40	-1.0
2,540,130	-		DDA3937_RS11170	0.40	-1.5
2,540,130	-		DDA3937_RS11170	0.40	-2.4
2,540,130	-		DDA3937_RS11170	0.40	-0.3
2,540,130	-		DDA3937_RS11170	0.40	-0.4
2,540,162	+		DDA3937_RS11170	0.43	-2.2
2,540,162	+		DDA3937_RS11170	0.43	+0.9
2,540,162	+		DDA3937_RS11170	0.43	+1.2
2,540,163	-		DDA3937_RS11170	0.43	+5.1
2,540,163	-		DDA3937_RS11170	0.43	-1.4
2,540,163	-		DDA3937_RS11170	0.43	-2.0
2,540,197	-		DDA3937_RS11170	0.46	+0.3
2,540,197	-		DDA3937_RS11170	0.46	-2.1
2,540,197	-		DDA3937_RS11170	0.46	-0.1
2,540,197	-		DDA3937_RS11170	0.46	-1.3
2,540,227	+		DDA3937_RS11170	0.48	-1.9
2,540,227	+		DDA3937_RS11170	0.48	-0.9
2,540,227	+		DDA3937_RS11170	0.48	+4.1
2,540,228	-		DDA3937_RS11170	0.48	+0.7
2,540,266	-		DDA3937_RS11170	0.51	-1.7
2,540,322	+		DDA3937_RS11170	0.56	+0.9
2,540,329	+		DDA3937_RS11170	0.56	+2.0
2,540,330	-		DDA3937_RS11170	0.56	-1.3
2,540,384	+		DDA3937_RS11170	0.61	-1.3
2,540,384	+		DDA3937_RS11170	0.61	-2.8
2,540,384	+		DDA3937_RS11170	0.61	+0.6
2,540,385	-		DDA3937_RS11170	0.61	-2.1
2,540,385	-		DDA3937_RS11170	0.61	-0.3
2,540,385	-		DDA3937_RS11170	0.61	-0.5
2,540,385	-		DDA3937_RS11170	0.61	-2.9
2,540,390	-		DDA3937_RS11170	0.61	-1.4
2,540,435	+		DDA3937_RS11170	0.65	-1.5
2,540,435	+		DDA3937_RS11170	0.65	-3.0
2,540,435	+		DDA3937_RS11170	0.65	+1.2
2,540,436	-		DDA3937_RS11170	0.65	-2.1
2,540,461	+		DDA3937_RS11170	0.67	-1.4
2,540,462	-		DDA3937_RS11170	0.67	-2.0
2,540,462	-		DDA3937_RS11170	0.67	-2.1
2,540,486	+		DDA3937_RS11170	0.69	-2.1
2,540,487	-		DDA3937_RS11170	0.69	+1.1
2,540,487	-		DDA3937_RS11170	0.69	+2.8
2,540,487	-		DDA3937_RS11170	0.69	+0.3
2,540,493	+		DDA3937_RS11170	0.69	-0.4
2,540,493	+		DDA3937_RS11170	0.69	-1.2
2,540,494	-		DDA3937_RS11170	0.70	+0.3
2,540,494	-		DDA3937_RS11170	0.70	+0.5
2,540,494	-		DDA3937_RS11170	0.70	+2.0
2,540,562	+				-1.3
2,540,573	+		DDA3937_RS11170	0.76	+0.6
2,540,617	+		DDA3937_RS11170	0.79	+0.2
2,540,618	-		DDA3937_RS11170	0.79	-1.8
2,540,618	-		DDA3937_RS11170	0.79	-1.0
2,540,822	+				-2.1
2,540,823	-				+2.1
2,540,832	+				+2.0
2,540,833	-				-0.7
2,540,876	-				-0.7
2,540,915	+				+0.6
2,540,916	-				-2.1
2,540,924	+				-0.3
2,540,925	-				-2.5
2,540,952	+				-1.7
2,540,953	-				+0.2
2,540,958	-				-2.9
2,540,991	+				-1.0
2,540,991	+				-1.0
2,540,993	+				-2.0
2,540,993	+				-1.3
2,540,993	+				-1.7
2,540,994	-				-1.0
2,540,994	-				-2.0
2,540,994	-				-0.7
2,541,001	-				+0.3
2,541,005	-				-2.2
2,541,031	+				+1.8
2,541,031	+				-1.7
2,541,031	+				+0.1
2,541,031	+				-2.1
2,541,031	+				-1.9
2,541,147	-				-2.9
2,541,158	-				-0.7
2,541,161	+				-1.4
2,541,162	-				+1.4
2,541,189	+				-0.8
2,541,189	+				+0.4
2,541,189	+				-1.3
2,541,189	+				-3.0
2,541,190	-				+0.9
2,541,190	-				-2.2
2,541,191	+				-2.2
2,541,191	+				+1.0
2,541,191	+				+1.3
2,541,191	+				-0.3
2,541,191	+				-1.4
2,541,192	-				-1.7
2,541,192	-				-2.0
2,541,192	-				-1.8
2,541,213	+				+1.3
2,541,213	+				-0.0
2,541,213	+				+2.9
2,541,213	+				+0.8
2,541,213	+				-0.6
2,541,213	+				-1.3
2,541,213	+				-2.2
2,541,213	+				-2.4
2,541,213	+				-1.1
2,541,214	-				-2.2
2,541,214	-				-0.9
2,541,214	-				-2.1
2,541,214	-				-1.2
2,541,214	-				-1.9
2,541,214	-				-0.7
2,541,215	+				-1.5
2,541,215	+				-0.8
2,541,215	+				+1.1
2,541,216	-				-0.3
2,541,292	+				+0.3
2,541,292	+				-1.0
2,541,326	-				-0.9
2,541,326	-				-1.1
2,541,337	-				-3.9
2,541,340	+				+0.0
2,541,340	+				-0.4
2,541,340	+				-1.1
2,541,341	-				-0.6
2,541,341	-				-1.0
2,541,415	+		DDA3937_RS11175	0.13	+3.0
2,541,415	+		DDA3937_RS11175	0.13	+0.4
2,541,416	-		DDA3937_RS11175	0.14	-0.5
2,541,416	-		DDA3937_RS11175	0.14	-2.6
2,541,416	-		DDA3937_RS11175	0.14	-0.5
2,541,416	-		DDA3937_RS11175	0.14	-2.2
2,541,416	-		DDA3937_RS11175	0.14	-1.0
2,541,463	+		DDA3937_RS11175	0.17	-2.3
2,541,463	+		DDA3937_RS11175	0.17	-1.5
2,541,464	-		DDA3937_RS11175	0.17	+1.8
2,541,464	-		DDA3937_RS11175	0.17	-1.0
2,541,464	-		DDA3937_RS11175	0.17	-1.5
2,541,526	+		DDA3937_RS11175	0.21	-3.0
2,541,613	+		DDA3937_RS11175	0.26	-1.5
2,541,613	+		DDA3937_RS11175	0.26	-0.9
2,541,613	+		DDA3937_RS11175	0.26	+0.4
2,541,613	+		DDA3937_RS11175	0.26	-0.5
2,541,613	+				+2.5
2,541,613	+		DDA3937_RS11175	0.26	-1.3
2,541,613	+		DDA3937_RS11175	0.26	+1.7
2,541,613	+		DDA3937_RS11175	0.26	-1.5
2,541,614	-		DDA3937_RS11175	0.26	-1.3
2,541,614	-		DDA3937_RS11175	0.26	-2.7
2,541,614	-		DDA3937_RS11175	0.26	+0.6
2,541,614	-		DDA3937_RS11175	0.26	+1.4
2,541,614	-		DDA3937_RS11175	0.26	+1.2
2,541,614	-		DDA3937_RS11175	0.26	-1.2
2,541,655	+		DDA3937_RS11175	0.29	+0.2
2,541,656	-		DDA3937_RS11175	0.29	+0.6
2,541,656	-		DDA3937_RS11175	0.29	-2.3
2,541,676	+		DDA3937_RS11175	0.30	-1.3
2,541,676	+		DDA3937_RS11175	0.30	+1.3
2,541,677	-		DDA3937_RS11175	0.31	-0.9
2,541,677	-		DDA3937_RS11175	0.31	-0.7
2,541,677	-		DDA3937_RS11175	0.31	-1.0
2,541,677	-		DDA3937_RS11175	0.31	-0.7
2,541,754	+		DDA3937_RS11175	0.36	+0.8
2,541,754	+		DDA3937_RS11175	0.36	+0.3
2,541,755	-		DDA3937_RS11175	0.36	-0.5
2,541,755	-		DDA3937_RS11175	0.36	-0.3
2,541,771	+		DDA3937_RS11175	0.37	-0.9
2,541,772	-		DDA3937_RS11175	0.37	-1.4
2,541,833	-		DDA3937_RS11175	0.41	-1.2
2,541,848	+		DDA3937_RS11175	0.42	-2.4