Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10405

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,343,312	+		DDA3937_RS10395	0.51	+3.7
2,343,425	+		DDA3937_RS10395	0.62	+3.5
2,343,425	+		DDA3937_RS10395	0.62	+3.7
2,343,425	+		DDA3937_RS10395	0.62	+3.8
2,343,425	+		DDA3937_RS10395	0.62	+5.0
2,343,426	-		DDA3937_RS10395	0.62	+2.7
2,343,426	-		DDA3937_RS10395	0.62	+3.0
2,343,426	-		DDA3937_RS10395	0.62	+3.1
2,343,426	-		DDA3937_RS10395	0.62	+2.6
2,343,426	-		DDA3937_RS10395	0.62	+3.0
2,343,426	-		DDA3937_RS10395	0.62	+3.0
2,343,426	-		DDA3937_RS10395	0.62	+2.9
2,343,511	+		DDA3937_RS10395	0.71	+3.8
2,343,511	+		DDA3937_RS10395	0.71	+3.8
2,343,511	+		DDA3937_RS10395	0.71	+3.6
2,343,511	+		DDA3937_RS10395	0.71	+3.8
2,343,511	+		DDA3937_RS10395	0.71	+4.1
2,343,511	+		DDA3937_RS10395	0.71	+4.1
2,343,511	+		DDA3937_RS10395	0.71	+3.8
2,343,511	+		DDA3937_RS10395	0.71	+3.8
2,343,511	+		DDA3937_RS10395	0.71	+3.6
2,343,511	+		DDA3937_RS10395	0.71	+4.0
2,343,511	+		DDA3937_RS10395	0.71	+3.6
2,343,511	+		DDA3937_RS10395	0.71	+5.1
2,343,511	+		DDA3937_RS10395	0.71	+3.1
2,343,512	-		DDA3937_RS10395	0.71	+3.3
2,343,512	-		DDA3937_RS10395	0.71	+3.0
2,343,512	-		DDA3937_RS10395	0.71	+2.9
2,343,512	-		DDA3937_RS10395	0.71	+3.0
2,343,512	-		DDA3937_RS10395	0.71	+1.4
2,343,512	-		DDA3937_RS10395	0.71	+3.2
2,343,512	-		DDA3937_RS10395	0.71	+2.9
2,343,512	-		DDA3937_RS10395	0.71	+3.3
2,343,512	-		DDA3937_RS10395	0.71	+3.3
2,343,512	-		DDA3937_RS10395	0.71	+2.7
2,343,512	-		DDA3937_RS10395	0.71	+3.5
2,343,512	-		DDA3937_RS10395	0.71	+4.1
2,343,512	-		DDA3937_RS10395	0.71	+3.8
2,343,512	-		DDA3937_RS10395	0.71	+2.8
2,343,512	-		DDA3937_RS10395	0.71	+2.6
2,343,512	-		DDA3937_RS10395	0.71	+3.3
2,343,512	-		DDA3937_RS10395	0.71	+2.5
2,343,541	+		DDA3937_RS10395	0.74	+3.7
2,343,541	+		DDA3937_RS10395	0.74	+3.6
2,343,541	+		DDA3937_RS10395	0.74	+3.8
2,343,541	+		DDA3937_RS10395	0.74	+4.0
2,343,541	+		DDA3937_RS10395	0.74	+4.1
2,343,541	+		DDA3937_RS10395	0.74	+3.7
2,343,541	+		DDA3937_RS10395	0.74	+3.4
2,343,542	-		DDA3937_RS10395	0.74	+3.8
2,343,542	-		DDA3937_RS10395	0.74	+3.4
2,343,542	-		DDA3937_RS10395	0.74	+3.6
2,343,542	-		DDA3937_RS10395	0.74	+3.2
2,343,553	+		DDA3937_RS10395	0.75	+4.1
2,343,553	+		DDA3937_RS10395	0.75	+3.8
2,343,553	+		DDA3937_RS10395	0.75	+3.7
2,343,554	-		DDA3937_RS10395	0.75	+2.7
2,343,554	-		DDA3937_RS10395	0.75	+4.2
2,343,554	-		DDA3937_RS10395	0.75	+0.8
2,343,554	-		DDA3937_RS10395	0.75	+2.7
2,343,574	+		DDA3937_RS10395	0.77	+4.0
2,343,574	+		DDA3937_RS10395	0.77	+3.7
2,343,575	-		DDA3937_RS10395	0.77	+3.2
2,343,575	-		DDA3937_RS10395	0.77	+3.3
2,343,575	-		DDA3937_RS10395	0.77	+2.7
2,343,576	+		DDA3937_RS10395	0.77	+4.3
2,343,576	+		DDA3937_RS10395	0.77	+4.0
2,343,576	+		DDA3937_RS10395	0.77	+4.0
2,343,576	+		DDA3937_RS10395	0.77	+4.3
2,343,577	-		DDA3937_RS10395	0.77	+3.9
2,343,577	-		DDA3937_RS10395	0.77	+3.4
2,343,577	-		DDA3937_RS10395	0.77	+2.9
2,343,577	-		DDA3937_RS10395	0.77	+3.0
2,343,627	+		DDA3937_RS10395	0.82	+4.0
2,343,627	+		DDA3937_RS10395	0.82	+3.0
2,343,627	+		DDA3937_RS10395	0.82	+4.2
2,343,627	+		DDA3937_RS10395	0.82	+3.5
2,343,628	-		DDA3937_RS10395	0.82	+3.4
2,343,628	-		DDA3937_RS10395	0.82	+3.4
2,343,628	-		DDA3937_RS10395	0.82	+3.0
2,343,628	-		DDA3937_RS10395	0.82	+2.5
2,343,628	-		DDA3937_RS10395	0.82	+4.0
2,343,692	+		DDA3937_RS10395	0.89	+4.6
2,343,692	+		DDA3937_RS10395	0.89	+4.2
2,343,692	+		DDA3937_RS10395	0.89	+3.9
2,343,692	+		DDA3937_RS10395	0.89	+3.9
2,343,692	+		DDA3937_RS10395	0.89	+3.9
2,343,692	+		DDA3937_RS10395	0.89	+4.0
2,343,693	-		DDA3937_RS10395	0.89	+2.6
2,343,693	-		DDA3937_RS10395	0.89	+3.0
2,343,693	-		DDA3937_RS10395	0.89	+3.3
2,343,693	-		DDA3937_RS10395	0.89	+3.6
2,343,693	-		DDA3937_RS10395	0.89	+2.3
2,343,693	-		DDA3937_RS10395	0.89	+2.9
2,343,693	-		DDA3937_RS10395	0.89	+1.5
2,343,821	+				+0.0
2,343,821	+				+3.3
2,343,822	-				+0.9
2,343,835	+				+4.1
2,343,869	+				+0.6
2,343,892	-				+0.7
2,343,979	-		DDA3937_RS10400	0.21	-2.8
2,343,979	-		DDA3937_RS10400	0.21	+1.2
2,344,021	+		DDA3937_RS10400	0.34	-0.2
2,344,021	+		DDA3937_RS10400	0.34	+0.1
2,344,137	+		DDA3937_RS10400	0.70	-0.4
2,344,138	-		DDA3937_RS10400	0.70	+1.8
2,344,185	-		DDA3937_RS10400	0.85	-3.4
2,344,185	-		DDA3937_RS10400	0.85	-0.1
2,344,185	-		DDA3937_RS10400	0.85	+0.6
2,344,226	-				+0.4
2,344,226	-				-1.8
2,344,233	+				-2.2
2,344,234	-				+0.4
2,344,234	-				-2.4
2,344,266	+				-0.2
2,344,266	+				-2.5
2,344,267	-				+1.6
2,344,267	-				-2.6
2,344,267	-				-0.4
2,344,267	-				-0.1
2,344,267	-				+0.6
2,344,922	+		DDA3937_RS10405	0.43	+1.1
2,345,300	+		DDA3937_RS10405	0.69	-1.6
2,345,378	-		DDA3937_RS10405	0.75	+1.2
2,345,752	-				+1.1
2,345,752	-				+1.5
2,345,798	-				+1.1
2,345,798	-				+1.1
2,345,798	-				+0.8
2,345,798	-				+0.2
2,345,798	-				+2.9
2,345,798	-				+2.2
2,345,798	-				-2.1
2,345,798	-				-1.0
2,345,804	-				+1.7
2,345,804	-				-3.0
2,345,804	-				+1.7
2,345,837	+				+1.4
2,345,837	+				-2.8
2,345,838	-				+1.0
2,345,840	+				+0.5
2,345,840	+				-0.4
2,345,840	+				-0.1
2,345,840	+				+2.0
2,345,840	+				+2.0
2,345,841	-				-2.4
2,345,841	-				+0.1
2,345,841	-				+1.2
2,345,842	+				-0.4
2,345,933	+				-0.7
2,345,933	+				-1.8
2,345,933	+				-0.5
2,345,934	-				-0.5
2,345,934	-				+2.5
2,345,934	-				-1.0
2,345,934	-				-0.7
2,345,934	-				+1.1
2,345,935	+				-1.1
2,345,935	+				-0.5
2,345,935	+				-1.4
2,345,935	+				-2.2
2,345,935	+				+0.3
2,345,935	+				-2.0
2,345,935	+				-0.2
2,345,935	+				+2.4
2,345,935	+				+1.4
2,345,936	-				+2.6
2,345,936	-				+0.7
2,345,936	-				+2.9
2,345,936	-				-1.7
2,345,936	-				+2.1
2,345,936	-				+1.0
2,345,943	+				+1.1
2,345,943	+				-1.4
2,345,944	-				+0.1
2,345,944	-				-1.6
2,345,944	-				+0.8
2,345,944	-				-3.0
2,345,944	-				+1.6
2,345,957	+				+1.7
2,345,957	+				-0.2
2,345,957	+				-2.6
2,345,957	+				-0.6
2,345,957	+				-1.6
2,345,957	+				-0.4
2,345,958	-				-1.2
2,345,958	-				-1.2
2,345,958	-				+0.9
2,345,958	-				-2.0
2,345,958	-				-0.2
2,345,960	+				-1.6
2,345,960	+				+2.5
2,345,960	+				-0.1
2,345,960	+				+1.4
2,345,960	+				+1.4
2,345,960	+				+0.4
2,345,960	+				-0.6
2,345,961	-				-4.0
2,345,961	-				+1.1
2,345,961	-				+0.2
2,345,963	+				-2.5
2,345,963	+				-1.0
2,345,964	-				+1.1
2,345,964	-				-1.2
2,345,989	+				+0.9
2,345,989	+				+0.4
2,345,989	+				+0.0
2,345,989	+				-0.6
2,345,989	+				-0.4
2,345,990	-				-0.1
2,345,990	-				+1.7
2,345,990	-				-0.2
2,345,990	-				+1.4
2,346,047	+		DDA3937_RS23170	0.20	+0.0
2,346,047	+		DDA3937_RS23170	0.20	-1.8
2,346,114	-		DDA3937_RS23170	0.58	-2.7
2,346,166	-		DDA3937_RS23170	0.87	+2.0
2,346,186	+				-0.6
2,346,187	-				-1.5
2,346,187	-				-1.4
2,346,191	-				-0.6
2,346,247	-				-1.2
2,346,249	-				+0.7
2,346,249	-				+2.4
2,346,264	-				-1.0
2,346,264	-				+1.2
2,346,575	-		DDA3937_RS10410	0.41	+0.8
2,346,575	-		DDA3937_RS10410	0.41	-1.0
2,346,575	-		DDA3937_RS10410	0.41	+0.9
2,346,575	-		DDA3937_RS10410	0.41	+1.4
2,346,575	-		DDA3937_RS10410	0.41	-1.8