Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10025

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,262,784	+				-1.4
2,262,868	-				+0.2
2,262,868	-				-1.3
2,262,914	-				-1.4
2,262,932	+				-2.7
2,262,932	+				+0.8
2,262,937	-				+0.0
2,263,185	+		DDA3937_RS10020	0.40	+1.3
2,263,185	+		DDA3937_RS10020	0.40	-2.7
2,263,186	-		DDA3937_RS10020	0.40	-1.0
2,263,193	+		DDA3937_RS10020	0.41	+2.4
2,263,193	+		DDA3937_RS10020	0.41	-0.2
2,263,194	-				+1.4
2,263,194	-		DDA3937_RS10020	0.41	+0.6
2,263,194	-		DDA3937_RS10020	0.41	-1.6
2,263,194	-		DDA3937_RS10020	0.41	-0.2
2,263,197	+		DDA3937_RS10020	0.42	-0.8
2,263,198	-		DDA3937_RS10020	0.42	+1.1
2,263,198	-		DDA3937_RS10020	0.42	-1.1
2,263,266	+		DDA3937_RS10020	0.54	-1.7
2,263,267	-				-0.2
2,263,326	+		DDA3937_RS10020	0.64	-1.6
2,263,386	+				+1.8
2,263,386	+		DDA3937_RS10020	0.75	+1.2
2,263,386	+		DDA3937_RS10020	0.75	+1.9
2,263,387	-		DDA3937_RS10020	0.75	-0.0
2,263,387	-		DDA3937_RS10020	0.75	+0.4
2,263,452	+		DDA3937_RS10020	0.86	-0.6
2,263,453	-		DDA3937_RS10020	0.86	-0.8
2,263,453	-		DDA3937_RS10020	0.86	-0.2
2,263,453	-		DDA3937_RS10020	0.86	-0.1
2,263,453	-		DDA3937_RS10020	0.86	-0.3
2,263,529	-				-1.4
2,263,565	+				+0.1
2,263,565	+				-0.4
2,263,565	+				+1.5
2,263,566	-				-1.0
2,263,633	-				-2.1
2,263,633	-				-1.2
2,263,635	+				+0.8
2,263,636	-				+0.4
2,263,636	-				+1.8
2,263,636	-				-1.3
2,263,636	-				+1.5
2,263,643	+				-0.4
2,263,644	-				-0.8
2,263,644	-				+1.0
2,263,657	-				-0.2
2,263,676	+				-0.6
2,263,677	-				+2.7
2,263,732	+				-2.0
2,263,732	+				-1.6
2,263,732	+				-1.8
2,263,733	-				+0.7
2,263,733	-				-1.6
2,263,733	-				-2.3
2,263,733	-				-1.7
2,263,733	-				-2.2
2,263,733	-				-2.8
2,263,733	-				-1.2
2,263,757	+				-2.2
2,263,757	+				-2.1
2,263,757	+				-0.2
2,263,757	+				+1.0
2,263,757	+				-0.6
2,263,759	+				+2.1
2,263,759	+				-1.2
2,263,759	+				-2.6
2,263,760	-				+0.4
2,263,806	+				-0.6
2,263,857	+		DDA3937_RS10025	0.16	+1.1
2,263,961	+		DDA3937_RS10025	0.30	-0.2
2,263,961	+		DDA3937_RS10025	0.30	-0.6
2,263,962	-		DDA3937_RS10025	0.30	+2.4
2,263,962	-		DDA3937_RS10025	0.30	+0.6
2,264,225	-		DDA3937_RS10025	0.64	-0.6
2,264,246	-		DDA3937_RS10025	0.67	+1.6
2,264,246	-		DDA3937_RS10025	0.67	-2.8
2,264,246	-		DDA3937_RS10025	0.67	-2.7
2,264,268	+		DDA3937_RS10025	0.70	+2.5
2,264,268	+		DDA3937_RS10025	0.70	-1.2
2,264,269	-		DDA3937_RS10025	0.70	-0.6
2,264,279	-		DDA3937_RS10025	0.71	+1.6
2,264,279	-		DDA3937_RS10025	0.71	+0.8
2,264,287	+		DDA3937_RS10025	0.72	+1.2
2,264,306	-		DDA3937_RS10025	0.75	+1.6
2,264,414	+		DDA3937_RS10025	0.89	-0.6
2,264,414	+		DDA3937_RS10025	0.89	-3.2
2,264,414	+		DDA3937_RS10025	0.89	+0.3
2,264,415	-		DDA3937_RS10025	0.89	+1.4
2,264,415	-		DDA3937_RS10025	0.89	-0.6
2,264,415	-				-0.2
2,264,628	+				+1.3
2,264,628	+				-0.2
2,264,628	+				-1.6
2,264,629	-				+0.6
2,264,629	-				-1.3
2,264,638	+				+1.9
2,264,638	+				+0.2
2,264,638	+				-1.8
2,264,638	+				+0.9
2,264,638	+				-0.6
2,264,639	-				-2.2
2,264,639	-				-0.6
2,264,639	-				-1.1
2,264,639	-				+2.9
2,264,642	+				+0.0
2,264,643	-				-2.4
2,264,679	-				+2.6
2,264,683	+				+1.3
2,264,683	+				-1.4
2,264,683	+				-1.6
2,264,683	+				+2.5
2,264,683	+				+0.3
2,264,683	+				-0.6
2,264,684	-				-0.2
2,264,684	-				-0.6
2,264,684	-				-1.8
2,264,684	-				+0.2
2,264,684	-				+3.3
2,264,684	-				-1.4
2,264,685	+				-0.6
2,264,685	+				+0.8
2,264,685	+				-1.5
2,264,685	+				+1.2
2,264,685	+				-0.2
2,264,685	+				+0.1
2,264,685	+				-0.4
2,264,686	-				+1.4
2,264,686	-				-1.4
2,264,686	-				+4.9
2,264,686	-				-0.6
2,264,686	-				-1.8
2,264,686	-				-0.4
2,264,686	-				+0.2
2,264,686	-				+3.2
2,264,686	-				+0.7
2,264,690	-				+1.6
2,264,690	-				+0.6
2,264,708	+				+0.2
2,264,708	+				-1.2
2,264,708	+				-0.4
2,264,720	-				-0.3
2,264,720	-				+0.8
2,264,774	+				+0.4
2,264,839	+		DDA3937_RS10030	0.13	+0.2
2,264,920	+		DDA3937_RS10030	0.40	-1.2
2,264,936	+		DDA3937_RS10030	0.45	-0.8
2,264,936	+		DDA3937_RS10030	0.45	+0.4
2,264,937	-				-0.6
2,264,937	-		DDA3937_RS10030	0.46	-2.4
2,264,989	+		DDA3937_RS10030	0.63	+2.5
2,265,022	+		DDA3937_RS10030	0.74	-1.0
2,265,022	+		DDA3937_RS10030	0.74	+0.3
2,265,025	+		DDA3937_RS10030	0.75	-1.4
2,265,044	-		DDA3937_RS10030	0.82	-1.2
2,265,044	-		DDA3937_RS10030	0.82	-1.1
2,265,050	-		DDA3937_RS10030	0.84	+0.5
2,265,214	-				+1.9
2,265,227	-				+1.4
2,265,296	+		DDA3937_RS10035	0.12	-0.8
2,265,296	+		DDA3937_RS10035	0.12	+0.4
2,265,296	+		DDA3937_RS10035	0.12	+2.1
2,265,296	+		DDA3937_RS10035	0.12	-0.9
2,265,336	+		DDA3937_RS10035	0.16	+0.8
2,265,336	+		DDA3937_RS10035	0.16	-1.2
2,265,336	+		DDA3937_RS10035	0.16	-0.8
2,265,337	-		DDA3937_RS10035	0.16	-1.6
2,265,337	-		DDA3937_RS10035	0.16	-3.5
2,265,337	-		DDA3937_RS10035	0.16	+0.4
2,265,337	-		DDA3937_RS10035	0.16	+0.9
2,265,337	-		DDA3937_RS10035	0.16	+1.1
2,265,427	+		DDA3937_RS10035	0.25	+1.1
2,265,444	+		DDA3937_RS10035	0.27	+0.4
2,265,444	+		DDA3937_RS10035	0.27	-1.8