Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09820

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,215,129	-		DDA3937_RS09815	0.39	+0.8
2,215,363	-		DDA3937_RS09815	0.56	-1.9
2,215,377	+		DDA3937_RS09815	0.57	-1.8
2,215,377	+		DDA3937_RS09815	0.57	-1.8
2,215,378	-		DDA3937_RS09815	0.57	+0.2
2,215,378	-		DDA3937_RS09815	0.57	+0.4
2,215,378	-		DDA3937_RS09815	0.57	-0.6
2,215,388	+		DDA3937_RS09815	0.58	-3.3
2,215,437	+		DDA3937_RS09815	0.61	+0.4
2,215,437	+		DDA3937_RS09815	0.61	+0.6
2,215,437	+		DDA3937_RS09815	0.61	-1.6
2,215,437	+		DDA3937_RS09815	0.61	-0.9
2,215,438	-		DDA3937_RS09815	0.61	-1.4
2,215,438	-		DDA3937_RS09815	0.61	+1.4
2,215,438	-		DDA3937_RS09815	0.61	-2.1
2,215,438	-		DDA3937_RS09815	0.61	-1.9
2,215,492	+		DDA3937_RS09815	0.65	+1.4
2,215,539	+		DDA3937_RS09815	0.69	-3.1
2,215,539	+		DDA3937_RS09815	0.69	-1.5
2,215,539	+		DDA3937_RS09815	0.69	+1.9
2,215,539	+		DDA3937_RS09815	0.69	+1.8
2,215,540	-		DDA3937_RS09815	0.69	-0.0
2,215,584	+		DDA3937_RS09815	0.72	+0.7
2,215,584	+		DDA3937_RS09815	0.72	-1.6
2,215,584	+		DDA3937_RS09815	0.72	+0.6
2,215,585	-		DDA3937_RS09815	0.72	-1.4
2,215,746	+		DDA3937_RS09815	0.84	+0.9
2,215,746	+		DDA3937_RS09815	0.84	-0.9
2,215,746	+		DDA3937_RS09815	0.84	-2.7
2,215,746	+		DDA3937_RS09815	0.84	-0.9
2,215,746	+		DDA3937_RS09815	0.84	-0.5
2,215,747	-		DDA3937_RS09815	0.84	+0.6
2,215,747	-		DDA3937_RS09815	0.84	-0.6
2,215,747	-		DDA3937_RS09815	0.84	-0.2
2,215,747	-		DDA3937_RS09815	0.84	-1.8
2,215,747	-		DDA3937_RS09815	0.84	-1.9
2,215,747	-		DDA3937_RS09815	0.84	-0.6
2,215,747	-		DDA3937_RS09815	0.84	-0.9
2,215,899	+				+1.7
2,215,900	-				+0.4
2,215,900	-				+1.4
2,215,900	-				-0.6
2,215,963	-				-0.0
2,215,963	-				-0.6
2,215,977	+				-0.7
2,215,978	-				-0.3
2,215,980	-				-0.6
2,215,980	-				-2.5
2,215,980	-				-0.2
2,215,980	-				-0.1
2,215,982	+				-2.4
2,215,982	+				+0.5
2,215,982	+				+0.4
2,215,983	-				-0.9
2,215,983	-				-1.6
2,216,050	+				+2.8
2,216,050	+				+1.1
2,216,051	-				-1.9
2,216,055	-				+1.7
2,216,064	-				+0.0
2,216,068	-				+1.0
2,216,074	+				+0.7
2,216,102	+				-2.8
2,216,102	+				+0.1
2,216,127	-				-0.4
2,216,127	-				+0.6
2,216,383	-				-0.2
2,216,626	+		DDA3937_RS09820	0.36	+0.4
2,216,626	+		DDA3937_RS09820	0.36	-0.6
2,216,626	+		DDA3937_RS09820	0.36	-1.2
2,216,626	+		DDA3937_RS09820	0.36	-2.2
2,216,627	-		DDA3937_RS09820	0.37	-2.1
2,216,627	-		DDA3937_RS09820	0.37	-2.4
2,216,627	-		DDA3937_RS09820	0.37	-1.2
2,216,627	-		DDA3937_RS09820	0.37	-2.7
2,216,629	-		DDA3937_RS09820	0.37	+0.4
2,216,687	+		DDA3937_RS09820	0.41	-0.8
2,216,687	+		DDA3937_RS09820	0.41	-0.2
2,216,808	+		DDA3937_RS09820	0.49	-1.9
2,216,809	-		DDA3937_RS09820	0.49	+0.4
2,216,809	-		DDA3937_RS09820	0.49	-2.2
2,216,809	-		DDA3937_RS09820	0.49	+0.1
2,216,811	+		DDA3937_RS09820	0.49	+2.9
2,216,812	-		DDA3937_RS09820	0.49	-1.6
2,216,812	-		DDA3937_RS09820	0.49	-0.9
2,216,812	-		DDA3937_RS09820	0.49	-1.6
2,216,848	+		DDA3937_RS09820	0.52	+0.6
2,216,848	+		DDA3937_RS09820	0.52	-1.9
2,216,892	+		DDA3937_RS09820	0.55	+0.4
2,216,912	+		DDA3937_RS09820	0.56	-1.6
2,216,912	+		DDA3937_RS09820	0.56	-0.1
2,216,913	-		DDA3937_RS09820	0.57	-3.3
2,216,918	+		DDA3937_RS09820	0.57	+0.6
2,216,918	+		DDA3937_RS09820	0.57	-1.4
2,216,919	-		DDA3937_RS09820	0.57	-0.8
2,216,975	+		DDA3937_RS09820	0.61	-0.1
2,216,975	+		DDA3937_RS09820	0.61	-1.9
2,216,975	+		DDA3937_RS09820	0.61	-0.3
2,216,975	+		DDA3937_RS09820	0.61	+0.7
2,216,976	-		DDA3937_RS09820	0.61	+2.4
2,216,976	-		DDA3937_RS09820	0.61	-2.5
2,217,006	+		DDA3937_RS09820	0.63	+0.4
2,217,007	-		DDA3937_RS09820	0.63	-2.3
2,217,007	-		DDA3937_RS09820	0.63	-2.8
2,217,007	-		DDA3937_RS09820	0.63	+0.2
2,217,007	-		DDA3937_RS09820	0.63	+0.7
2,217,105	-		DDA3937_RS09820	0.70	-2.8
2,217,161	+		DDA3937_RS09820	0.74	-3.0
2,217,161	+		DDA3937_RS09820	0.74	-0.6
2,217,161	+		DDA3937_RS09820	0.74	+0.1
2,217,162	-		DDA3937_RS09820	0.74	-1.6
2,217,176	+		DDA3937_RS09820	0.75	-0.3
2,217,177	-		DDA3937_RS09820	0.75	-1.8
2,217,189	-		DDA3937_RS09820	0.76	-1.4
2,217,189	-		DDA3937_RS09820	0.76	+2.4
2,217,277	-		DDA3937_RS09820	0.82	-1.8
2,217,369	-		DDA3937_RS09820	0.88	+0.9
2,217,389	+		DDA3937_RS09820	0.90	-0.2
2,217,389	+		DDA3937_RS09820	0.90	-2.5
2,217,491	+				+0.5
2,217,491	+				+1.4
2,217,492	-				-1.5
2,217,627	+				-1.8
2,217,657	-				-2.5
2,217,814	+				+1.2
2,217,877	+				+0.4
2,217,878	-				-2.3
2,217,888	+				+0.4
2,217,888	+				+1.0
2,217,889	-				-0.6
2,217,958	+				-0.2
2,217,958	+				-1.8
2,217,968	+				+0.7
2,218,012	+				-1.9
2,218,013	-				+1.4
2,218,016	+				-0.0
2,218,016	+				-1.8
2,218,016	+				-0.6
2,218,016	+				-1.2
2,218,017	-				-1.5
2,218,017	-				-1.5
2,218,017	-				-2.0
2,218,046	+				+0.3
2,218,046	+				+3.0
2,218,047	-				-1.2
2,218,047	-				-2.4
2,218,047	-				-1.5
2,218,047	-				-3.6
2,218,047	-				-0.2
2,218,047	-				-1.5
2,218,083	-		DDA3937_RS09825	0.16	-1.2
2,218,083	-		DDA3937_RS09825	0.16	-2.5
2,218,094	+		DDA3937_RS09825	0.19	-0.5
2,218,095	-		DDA3937_RS09825	0.19	+0.4
2,218,095	-		DDA3937_RS09825	0.19	-2.3
2,218,172	+		DDA3937_RS09825	0.42	-1.2
2,218,185	+		DDA3937_RS09825	0.46	+0.3
2,218,186	-		DDA3937_RS09825	0.46	-2.5
2,218,215	-		DDA3937_RS09825	0.55	-2.3
2,218,241	+		DDA3937_RS09825	0.63	-0.2
2,218,249	-		DDA3937_RS09825	0.65	-0.9
2,218,269	+		DDA3937_RS09825	0.71	-1.7
2,218,269	+		DDA3937_RS09825	0.71	+0.2
2,218,269	+		DDA3937_RS09825	0.71	-1.8
2,218,269	+		DDA3937_RS09825	0.71	+1.0
2,218,269	+		DDA3937_RS09825	0.71	-2.1
2,218,269	+		DDA3937_RS09825	0.71	+0.8
2,218,269	+		DDA3937_RS09825	0.71	-0.8
2,218,270	-		DDA3937_RS09825	0.71	-0.2
2,218,270	-		DDA3937_RS09825	0.71	-3.5
2,218,270	-		DDA3937_RS09825	0.71	-1.4
2,218,270	-		DDA3937_RS09825	0.71	-0.5
2,218,270	-		DDA3937_RS09825	0.71	-0.6
2,218,343	+				-1.5
2,218,344	-				-1.6
2,218,365	+				-2.1
2,218,436	+				-1.6