Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09445

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,128,239	+		DDA3937_RS09435	0.44	+1.4
2,128,239	+		DDA3937_RS09435	0.44	-2.8
2,128,274	-		DDA3937_RS09435	0.53	-1.6
2,128,307	-		DDA3937_RS09435	0.62	-1.2
2,128,362	+		DDA3937_RS09435	0.77	+1.7
2,128,362	+		DDA3937_RS09435	0.77	+0.7
2,128,363	-		DDA3937_RS09435	0.77	-0.0
2,128,363	-		DDA3937_RS09435	0.77	+2.4
2,128,363	-		DDA3937_RS09435	0.77	-1.4
2,128,434	+				-1.4
2,128,437	+				+0.0
2,128,438	-				-0.9
2,128,438	-				-1.8
2,128,438	-				-0.2
2,128,453	-				+0.2
2,128,499	+				-0.6
2,128,499	+				+0.2
2,128,499	+				-1.2
2,128,500	-				-0.3
2,128,502	-				-0.9
2,128,502	-				+0.1
2,128,502	-				-3.4
2,128,502	-				-0.9
2,128,521	-				-0.6
2,128,527	+				-2.2
2,128,528	-				-1.6
2,128,528	-				-3.5
2,128,531	+				+1.9
2,128,532	-				+1.4
2,128,532	-				-3.5
2,128,537	+				-1.4
2,128,574	+				+0.7
2,128,575	-				+0.1
2,128,579	+				+1.5
2,128,579	+				-0.9
2,128,591	+				-0.7
2,128,591	+				-2.2
2,128,592	-				-3.1
2,128,592	-				-1.1
2,128,592	-				+2.5
2,128,597	-				+0.7
2,128,646	+				+1.3
2,128,646	+				-0.8
2,128,646	+				-1.6
2,128,647	-				-0.4
2,128,671	-		DDA3937_RS09440	0.10	-0.4
2,128,799	+		DDA3937_RS09440	0.60	-2.3
2,128,800	-		DDA3937_RS09440	0.60	+0.4
2,128,800	-		DDA3937_RS09440	0.60	+1.0
2,128,805	+		DDA3937_RS09440	0.62	-1.3
2,128,865	+		DDA3937_RS09440	0.85	+0.4
2,128,866	-		DDA3937_RS09440	0.86	+3.6
2,128,891	-				-0.3
2,128,891	-				+2.1
2,128,898	+				+1.6
2,128,899	-				-2.8
2,128,899	-				+0.5
2,128,913	+				-0.3
2,128,914	-				-2.6
2,128,914	-				+0.0
2,128,920	+				-0.9
2,128,920	+				-2.4
2,128,921	-				-2.5
2,128,954	+				-3.0
2,128,954	+				-2.1
2,128,954	+				-1.8
2,128,955	-				+2.0
2,128,955	-				+1.2
2,128,955	-				+0.8
2,128,955	-				-0.4
2,128,955	-				+2.6
2,128,955	-				-0.4
2,128,958	+				-0.1
2,128,958	+				-1.0
2,128,958	+				-0.9
2,128,958	+				+0.2
2,128,958	+				+0.4
2,128,958	+				+1.4
2,128,959	-				-0.2
2,128,959	-				-0.6
2,128,959	-				+1.1
2,128,959	-				+2.0
2,128,959	-				+1.9
2,128,959	-				-2.1
2,128,959	-				-1.2
2,128,959	-				+1.4
2,128,959	-				+0.4
2,128,977	-				+1.4
2,128,992	+				+0.4
2,128,992	+				-0.2
2,128,993	-				+0.5
2,128,993	-				+2.9
2,128,993	-				+1.9
2,128,993	-				-1.0
2,128,993	-				-0.9
2,128,993	-				+0.8
2,129,043	+				+0.7
2,129,043	+				+0.6
2,129,044	-				-0.6
2,129,044	-				+1.9
2,129,044	-				-2.5
2,129,053	+				-0.6
2,129,053	+				-1.2
2,129,054	-				-3.4
2,129,054	-				+2.4
2,129,054	-				+2.6
2,129,054	-				+2.2
2,129,085	+				-1.9
2,129,086	-				-0.2
2,129,125	+				+1.1
2,129,125	+				-0.5
2,129,125	+				+1.0
2,129,125	+				-0.6
2,129,125	+				-1.6
2,129,125	+				-0.6
2,129,125	+				-0.6
2,129,125	+				-0.2
2,129,126	-				+0.4
2,129,126	-				+0.3
2,129,126	-				-1.4
2,129,127	+				-0.6
2,129,127	+				-2.4
2,129,127	+				-1.5
2,129,127	+				-2.1
2,129,127	+				+2.3
2,129,127	+				-0.6
2,129,127	+				-2.1
2,129,127	+				-0.7
2,129,127	+				-2.5
2,129,127	+				-1.8
2,129,128	-				+0.8
2,129,128	-				-0.9
2,129,128	-				+0.7
2,129,128	-				-1.1
2,129,128	-				+3.2
2,129,128	-				+1.1
2,129,128	-				+0.7
2,129,128	-				+2.2
2,129,128	-				-1.8
2,129,128	-				-0.6
2,129,128	-				+2.5
2,129,128	-				-1.2
2,129,128	-				+0.9
2,129,139	-				+1.7
2,129,225	-				+0.5
2,129,398	+		DDA3937_RS09445	0.23	-2.2
2,129,398	+		DDA3937_RS09445	0.23	-1.6
2,129,500	-		DDA3937_RS09445	0.37	+0.3
2,129,677	+		DDA3937_RS09445	0.62	+1.1
2,129,678	-		DDA3937_RS09445	0.62	+1.2
2,129,696	-		DDA3937_RS09445	0.64	+0.6
2,129,805	+		DDA3937_RS09445	0.79	-0.2
2,129,806	-		DDA3937_RS09445	0.79	+1.8
2,129,806	-		DDA3937_RS09445	0.79	+0.9
2,129,817	-		DDA3937_RS09445	0.81	+0.1
2,129,826	+		DDA3937_RS09445	0.82	+1.8
2,129,826	+		DDA3937_RS09445	0.82	-1.4
2,129,827	-		DDA3937_RS09445	0.82	-1.4
2,129,827	-		DDA3937_RS09445	0.82	+2.0
2,129,829	+		DDA3937_RS09445	0.83	-2.4
2,129,923	-				-0.9
2,130,078	+				+1.4
2,130,078	+		DDA3937_RS09450	0.12	-0.7
2,130,078	+		DDA3937_RS09450	0.12	-0.1
2,130,078	+		DDA3937_RS09450	0.12	+0.1
2,130,078	+		DDA3937_RS09450	0.12	-1.5
2,130,079	-		DDA3937_RS09450	0.12	-1.6
2,130,079	-		DDA3937_RS09450	0.12	+1.3
2,130,080	+				+2.9
2,130,080	+		DDA3937_RS09450	0.13	+1.7
2,130,081	-		DDA3937_RS09450	0.13	-1.2
2,130,081	-		DDA3937_RS09450	0.13	-1.6
2,130,090	-		DDA3937_RS09450	0.14	+0.8
2,130,090	-		DDA3937_RS09450	0.14	+0.2
2,130,138	+		DDA3937_RS09450	0.19	-1.2
2,130,138	+		DDA3937_RS09450	0.19	-2.2
2,130,138	+		DDA3937_RS09450	0.19	-1.9
2,130,138	+		DDA3937_RS09450	0.19	-0.5
2,130,139	-		DDA3937_RS09450	0.19	-0.6
2,130,174	-		DDA3937_RS09450	0.23	+1.4
2,130,180	+		DDA3937_RS09450	0.24	-1.5
2,130,181	-		DDA3937_RS09450	0.24	+0.9
2,130,181	-		DDA3937_RS09450	0.24	+3.5
2,130,234	-		DDA3937_RS09450	0.30	-1.6
2,130,300	-		DDA3937_RS09450	0.37	-0.6
2,130,401	+		DDA3937_RS09450	0.48	+0.9
2,130,501	+		DDA3937_RS09450	0.59	-2.2
2,130,501	+		DDA3937_RS09450	0.59	-0.9
2,130,501	+		DDA3937_RS09450	0.59	+0.4
2,130,501	+		DDA3937_RS09450	0.59	-2.4
2,130,501	+		DDA3937_RS09450	0.59	-1.6
2,130,502	-		DDA3937_RS09450	0.59	-2.1
2,130,502	-		DDA3937_RS09450	0.59	-0.1
2,130,502	-		DDA3937_RS09450	0.59	-1.4
2,130,502	-		DDA3937_RS09450	0.59	-1.2
2,130,527	+		DDA3937_RS09450	0.62	-0.8
2,130,710	+		DDA3937_RS09450	0.82	-1.4
2,130,710	+		DDA3937_RS09450	0.82	+0.3
2,130,710	+		DDA3937_RS09450	0.82	+4.4
2,130,710	+		DDA3937_RS09450	0.82	+1.2
2,130,710	+		DDA3937_RS09450	0.82	+1.8
2,130,710	+		DDA3937_RS09450	0.82	+0.6
2,130,711	-		DDA3937_RS09450	0.82	+1.7
2,130,711	-		DDA3937_RS09450	0.82	+1.7
2,130,711	-		DDA3937_RS09450	0.82	-0.2
2,130,711	-		DDA3937_RS09450	0.82	+0.7
2,130,711	-		DDA3937_RS09450	0.82	+0.4
2,130,711	-		DDA3937_RS09450	0.82	+2.0
2,130,711	-		DDA3937_RS09450	0.82	-1.4
2,130,711	-		DDA3937_RS09450	0.82	-2.3
2,130,712	+		DDA3937_RS09450	0.83	+0.1
2,130,712	+		DDA3937_RS09450	0.83	-1.9
2,130,712	+		DDA3937_RS09450	0.83	+1.3
2,130,713	-		DDA3937_RS09450	0.83	-2.6
2,130,713	-		DDA3937_RS09450	0.83	-0.9
2,130,819	+				-1.4
2,130,819	+				-0.9
2,130,944	+				-0.9
2,130,944	+				-0.6
2,130,944	+				-0.2
2,130,945	-				-1.6
2,130,945	-				+3.9
2,130,945	-				+1.3