Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09395

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,117,626	+		DDA3937_RS09390	0.27	+0.3
2,117,635	+		DDA3937_RS09390	0.28	-0.3
2,117,635	+		DDA3937_RS09390	0.28	-1.4
2,117,636	-		DDA3937_RS09390	0.28	+1.0
2,117,636	-		DDA3937_RS09390	0.28	+0.6
2,117,804	+		DDA3937_RS09390	0.43	-2.1
2,117,804	+		DDA3937_RS09390	0.43	-0.2
2,117,804	+		DDA3937_RS09390	0.43	-1.2
2,117,804	+		DDA3937_RS09390	0.43	+1.9
2,117,805	-		DDA3937_RS09390	0.43	+1.8
2,117,809	-		DDA3937_RS09390	0.44	+1.8
2,117,835	+		DDA3937_RS09390	0.46	+1.9
2,117,835	+		DDA3937_RS09390	0.46	-0.2
2,117,835	+		DDA3937_RS09390	0.46	-2.2
2,117,835	+		DDA3937_RS09390	0.46	+0.2
2,117,836	-		DDA3937_RS09390	0.46	-0.6
2,117,836	-		DDA3937_RS09390	0.46	+0.3
2,117,836	-		DDA3937_RS09390	0.46	-0.4
2,117,963	+		DDA3937_RS09390	0.57	+0.4
2,117,967	+		DDA3937_RS09390	0.58	+2.0
2,117,968	-		DDA3937_RS09390	0.58	-0.6
2,118,052	-		DDA3937_RS09390	0.65	-0.2
2,118,052	-		DDA3937_RS09390	0.65	+0.7
2,118,074	-				+2.7
2,118,094	+		DDA3937_RS09390	0.69	-1.9
2,118,095	-		DDA3937_RS09390	0.69	-1.3
2,118,095	-		DDA3937_RS09390	0.69	-0.9
2,118,095	-		DDA3937_RS09390	0.69	-0.7
2,118,095	-		DDA3937_RS09390	0.69	+0.4
2,118,120	+		DDA3937_RS09390	0.71	+0.0
2,118,169	+		DDA3937_RS09390	0.76	+0.3
2,118,170	-		DDA3937_RS09390	0.76	+0.4
2,118,170	-		DDA3937_RS09390	0.76	+1.6
2,118,173	-		DDA3937_RS09390	0.76	-2.6
2,118,249	-		DDA3937_RS09390	0.83	+0.6
2,118,379	+				+1.8
2,118,379	+				-0.6
2,118,379	+				-1.4
2,118,380	-				+2.1
2,118,385	+				-0.1
2,118,385	+				+2.2
2,118,385	+				-4.0
2,118,385	+				+1.6
2,118,386	-				+2.0
2,118,386	-				-2.1
2,118,386	-				-0.9
2,118,386	-				+2.6
2,118,386	-				-0.9
2,118,386	-				-2.1
2,118,386	-				+0.6
2,118,547	+				-2.8
2,118,548	-				+0.5
2,118,604	+		DDA3937_RS09395	0.19	-1.9
2,118,773	+		DDA3937_RS09395	0.46	-1.2
2,118,785	+		DDA3937_RS09395	0.48	-1.1
2,118,785	+		DDA3937_RS09395	0.48	+0.4
2,118,785	+		DDA3937_RS09395	0.48	-1.2
2,118,786	-		DDA3937_RS09395	0.48	-1.3
2,118,788	-		DDA3937_RS09395	0.48	-1.9
2,118,788	-		DDA3937_RS09395	0.48	-1.8
2,118,788	-		DDA3937_RS09395	0.48	-0.8
2,118,788	-		DDA3937_RS09395	0.48	-2.2
2,118,840	+		DDA3937_RS09395	0.57	-1.4
2,118,841	-		DDA3937_RS09395	0.57	+0.8
2,118,860	-		DDA3937_RS09395	0.60	+1.5
2,118,860	-		DDA3937_RS09395	0.60	-0.1
2,118,860	-		DDA3937_RS09395	0.60	+0.7
2,118,922	-		DDA3937_RS09395	0.70	-2.6
2,118,977	-		DDA3937_RS09395	0.79	-0.9
2,119,099	-				+1.0
2,119,133	+				-0.1
2,119,192	+				-2.1
2,119,197	-				+0.4
2,119,197	-				-1.4
2,119,211	-				-1.2
2,119,224	+				-1.2
2,119,230	+				-0.9
2,119,231	-				-0.9
2,119,231	-				+1.6
2,119,231	-				+1.4
2,119,233	-				-0.6
2,119,233	-				-0.1
2,119,233	-				+1.2
2,119,254	+				+0.8
2,119,278	-				-2.1
2,119,311	+				-1.7
2,119,317	+				-1.9
2,119,317	+				+2.3
2,119,319	+				+2.6
2,119,349	+				+0.9
2,119,361	+				-0.9
2,119,372	+				-1.8
2,119,391	+				-0.9
2,119,391	+				-1.2
2,119,391	+				+1.4
2,119,391	+				+2.1
2,119,391	+				+0.7
2,119,391	+				-1.2
2,119,391	+				+0.4
2,119,391	+				+2.2
2,119,391	+				+0.0
2,119,391	+				+1.0
2,119,391	+				+1.9
2,119,391	+				-1.0
2,119,391	+				+0.6
2,119,391	+				+1.7
2,119,391	+				-0.6
2,119,391	+				-1.8
2,119,391	+				-1.4
2,119,392	-				-1.2
2,119,392	-				-3.5
2,119,392	-				+0.5
2,119,392	-				+3.2
2,119,392	-				-1.4
2,119,392	-				-0.3
2,119,392	-				-1.9
2,119,392	-				-2.2
2,119,392	-				-0.3
2,119,392	-				-1.4
2,119,392	-				-0.6
2,119,392	-				+0.5
2,119,392	-				+1.7
2,119,392	-				-1.1
2,119,392	-				-0.6
2,119,392	-				+1.1
2,119,392	-				-2.3
2,119,392	-				-1.2
2,119,392	-				+1.2
2,119,392	-				-2.3
2,119,392	-				+0.4
2,119,392	-				+0.4
2,119,392	-				+0.1
2,119,392	-				+1.3
2,119,392	-				+0.1
2,119,393	+				+1.6
2,119,393	+				-4.4
2,119,393	+				+0.2
2,119,394	-				-1.9
2,119,394	-				-1.6
2,119,394	-				-3.2
2,119,394	-				-1.4
2,119,394	-				-0.6
2,119,394	-				+0.6
2,119,397	+				-0.1
2,119,397	+				-2.5
2,119,397	+				-1.6
2,119,397	+				-0.3
2,119,398	-				+3.2
2,119,398	-				+0.2
2,119,398	-				+0.2
2,119,398	-				-1.9
2,119,402	+				-1.0
2,119,415	+				+1.9
2,119,415	+				-0.1
2,119,415	+				-1.2
2,119,416	-				-1.4
2,119,416	-				-0.9
2,119,433	+				+2.8
2,119,433	+				+3.5
2,119,441	+				-2.9
2,119,441	+				+0.5
2,119,441	+				-0.6
2,119,441	+				+2.7
2,119,442	-				+1.0
2,119,523	+		DDA3937_RS09400	0.11	+1.4
2,119,524	-		DDA3937_RS09400	0.11	+2.2
2,119,524	-		DDA3937_RS09400	0.11	+0.7
2,119,524	-		DDA3937_RS09400	0.11	+1.1
2,119,524	-		DDA3937_RS09400	0.11	-2.2
2,119,526	+		DDA3937_RS09400	0.11	-1.2
2,119,527	-		DDA3937_RS09400	0.11	+0.1
2,119,527	-		DDA3937_RS09400	0.11	+0.4
2,119,531	+		DDA3937_RS09400	0.11	-0.6
2,119,531	+		DDA3937_RS09400	0.11	+1.1
2,119,531	+		DDA3937_RS09400	0.11	+0.2
2,119,532	-		DDA3937_RS09400	0.12	-1.4
2,119,569	-		DDA3937_RS09400	0.16	+0.8
2,119,605	+		DDA3937_RS09400	0.20	+1.0
2,119,635	+		DDA3937_RS09400	0.24	+0.3
2,119,636	-		DDA3937_RS09400	0.24	-1.8
2,119,661	+		DDA3937_RS09400	0.27	+0.0
2,119,671	-		DDA3937_RS09400	0.28	+3.0
2,119,694	+		DDA3937_RS09400	0.31	+0.8
2,119,694	+		DDA3937_RS09400	0.31	-0.2
2,119,694	+		DDA3937_RS09400	0.31	-1.6
2,119,695	-		DDA3937_RS09400	0.31	+2.0
2,119,695	-				+0.4
2,119,702	-		DDA3937_RS09400	0.32	-1.4
2,119,702	-		DDA3937_RS09400	0.32	+0.4
2,119,779	+		DDA3937_RS09400	0.41	+0.8
2,119,779	+		DDA3937_RS09400	0.41	+0.5
2,119,779	+		DDA3937_RS09400	0.41	-2.4
2,119,779	+		DDA3937_RS09400	0.41	-1.2
2,119,780	-		DDA3937_RS09400	0.41	-0.6
2,119,780	-		DDA3937_RS09400	0.41	-2.3
2,119,780	-		DDA3937_RS09400	0.41	-2.1
2,119,787	+		DDA3937_RS09400	0.42	+0.4
2,120,000	+		DDA3937_RS09400	0.67	-1.4