Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS08700 and DDA3937_RS08705 are separated by 3 nucleotides DDA3937_RS08705 and DDA3937_RS08710 are separated by 114 nucleotides
DDA3937_RS08700: DDA3937_RS08700 - helix-turn-helix domain-containing protein, at 1,963,939 to 1,964,814
_RS08700
DDA3937_RS08705: DDA3937_RS08705 - peptidase T, at 1,964,818 to 1,966,047
_RS08705
DDA3937_RS08710: DDA3937_RS08710 - ABC transporter substrate-binding protein, at 1,966,162 to 1,967,757
_RS08710
Position (kb) 1964
1965
1966
1967 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1963.899 kb on + strand at 1963.900 kb on - strand at 1963.900 kb on - strand at 1963.900 kb on - strand at 1963.949 kb on - strand at 1963.964 kb on + strand at 1963.964 kb on + strand at 1963.965 kb on - strand at 1963.965 kb on - strand at 1963.967 kb on + strand at 1963.967 kb on + strand at 1963.967 kb on + strand at 1963.968 kb on - strand at 1963.968 kb on - strand at 1963.968 kb on - strand at 1963.968 kb on - strand at 1963.968 kb on - strand at 1963.968 kb on - strand at 1963.975 kb on + strand at 1963.975 kb on + strand at 1963.977 kb on + strand at 1963.978 kb on - strand at 1963.978 kb on - strand at 1963.978 kb on - strand at 1964.010 kb on + strand at 1964.092 kb on + strand, within DDA3937_RS08700 at 1964.092 kb on + strand, within DDA3937_RS08700 at 1964.092 kb on + strand, within DDA3937_RS08700 at 1964.092 kb on + strand, within DDA3937_RS08700 at 1964.093 kb on - strand, within DDA3937_RS08700 at 1964.093 kb on - strand, within DDA3937_RS08700 at 1964.093 kb on - strand, within DDA3937_RS08700 at 1964.093 kb on - strand, within DDA3937_RS08700 at 1964.093 kb on - strand, within DDA3937_RS08700 at 1964.093 kb on - strand, within DDA3937_RS08700 at 1964.093 kb on - strand, within DDA3937_RS08700 at 1964.116 kb on + strand, within DDA3937_RS08700 at 1964.117 kb on - strand, within DDA3937_RS08700 at 1964.117 kb on - strand, within DDA3937_RS08700 at 1964.202 kb on + strand, within DDA3937_RS08700 at 1964.233 kb on + strand, within DDA3937_RS08700 at 1964.233 kb on + strand, within DDA3937_RS08700 at 1964.234 kb on - strand, within DDA3937_RS08700 at 1964.239 kb on - strand, within DDA3937_RS08700 at 1964.313 kb on + strand, within DDA3937_RS08700 at 1964.314 kb on - strand, within DDA3937_RS08700 at 1964.314 kb on - strand, within DDA3937_RS08700 at 1964.348 kb on - strand, within DDA3937_RS08700 at 1964.433 kb on + strand, within DDA3937_RS08700 at 1964.433 kb on + strand, within DDA3937_RS08700 at 1964.434 kb on - strand, within DDA3937_RS08700 at 1964.446 kb on + strand, within DDA3937_RS08700 at 1964.449 kb on - strand, within DDA3937_RS08700 at 1964.449 kb on - strand, within DDA3937_RS08700 at 1964.449 kb on - strand, within DDA3937_RS08700 at 1964.513 kb on + strand, within DDA3937_RS08700 at 1964.514 kb on - strand, within DDA3937_RS08700 at 1964.550 kb on + strand, within DDA3937_RS08700 at 1964.550 kb on + strand, within DDA3937_RS08700 at 1964.550 kb on + strand, within DDA3937_RS08700 at 1964.583 kb on + strand, within DDA3937_RS08700 at 1964.584 kb on - strand, within DDA3937_RS08700 at 1964.641 kb on + strand, within DDA3937_RS08700 at 1964.641 kb on + strand, within DDA3937_RS08700 at 1964.641 kb on + strand, within DDA3937_RS08700 at 1964.641 kb on + strand, within DDA3937_RS08700 at 1964.641 kb on + strand, within DDA3937_RS08700 at 1964.641 kb on + strand, within DDA3937_RS08700 at 1964.642 kb on - strand, within DDA3937_RS08700 at 1964.642 kb on - strand, within DDA3937_RS08700 at 1964.642 kb on - strand, within DDA3937_RS08700 at 1964.642 kb on - strand, within DDA3937_RS08700 at 1964.642 kb on - strand, within DDA3937_RS08700 at 1964.642 kb on - strand, within DDA3937_RS08700 at 1964.642 kb on - strand, within DDA3937_RS08700 at 1964.642 kb on - strand, within DDA3937_RS08700 at 1964.858 kb on + strand at 1964.859 kb on - strand at 1965.083 kb on + strand, within DDA3937_RS08705 at 1965.083 kb on + strand, within DDA3937_RS08705 at 1965.083 kb on + strand, within DDA3937_RS08705 at 1965.083 kb on + strand, within DDA3937_RS08705 at 1965.083 kb on + strand, within DDA3937_RS08705 at 1965.083 kb on + strand, within DDA3937_RS08705 at 1965.083 kb on + strand, within DDA3937_RS08705 at 1965.083 kb on + strand, within DDA3937_RS08705 at 1965.083 kb on + strand, within DDA3937_RS08705 at 1965.084 kb on - strand, within DDA3937_RS08705 at 1965.084 kb on - strand, within DDA3937_RS08705 at 1965.084 kb on - strand, within DDA3937_RS08705 at 1965.087 kb on + strand, within DDA3937_RS08705 at 1965.154 kb on + strand, within DDA3937_RS08705 at 1965.155 kb on - strand, within DDA3937_RS08705 at 1965.155 kb on - strand, within DDA3937_RS08705 at 1965.165 kb on + strand, within DDA3937_RS08705 at 1965.258 kb on - strand, within DDA3937_RS08705 at 1965.422 kb on + strand, within DDA3937_RS08705 at 1965.422 kb on + strand, within DDA3937_RS08705 at 1965.423 kb on - strand, within DDA3937_RS08705 at 1965.423 kb on - strand at 1965.459 kb on - strand, within DDA3937_RS08705 at 1965.508 kb on + strand, within DDA3937_RS08705 at 1965.651 kb on + strand, within DDA3937_RS08705 at 1965.652 kb on - strand, within DDA3937_RS08705 at 1966.039 kb on - strand at 1966.059 kb on - strand at 1966.071 kb on + strand at 1966.100 kb on + strand at 1966.100 kb on + strand at 1966.101 kb on - strand at 1966.243 kb on + strand at 1966.243 kb on + strand at 1966.244 kb on - strand at 1966.272 kb on + strand at 1966.285 kb on + strand at 1966.285 kb on + strand at 1966.285 kb on + strand at 1966.285 kb on + strand at 1966.285 kb on + strand at 1966.285 kb on + strand at 1966.285 kb on + strand at 1966.285 kb on + strand at 1966.285 kb on + strand at 1966.285 kb on + strand at 1966.285 kb on + strand at 1966.286 kb on - strand at 1966.286 kb on - strand at 1966.286 kb on - strand at 1966.286 kb on - strand at 1966.286 kb on - strand at 1966.286 kb on - strand at 1966.286 kb on - strand at 1966.287 kb on + strand at 1966.288 kb on - strand at 1966.288 kb on - strand at 1966.288 kb on - strand at 1966.327 kb on + strand, within DDA3937_RS08710 at 1966.327 kb on + strand, within DDA3937_RS08710 at 1966.328 kb on - strand, within DDA3937_RS08710 at 1966.328 kb on - strand, within DDA3937_RS08710 at 1966.328 kb on - strand, within DDA3937_RS08710 at 1966.328 kb on - strand, within DDA3937_RS08710 at 1966.411 kb on - strand, within DDA3937_RS08710 at 1966.418 kb on - strand, within DDA3937_RS08710 at 1966.418 kb on - strand, within DDA3937_RS08710 at 1966.434 kb on + strand, within DDA3937_RS08710 at 1966.550 kb on + strand, within DDA3937_RS08710 at 1966.564 kb on + strand, within DDA3937_RS08710 at 1966.565 kb on - strand, within DDA3937_RS08710 at 1966.565 kb on - strand, within DDA3937_RS08710 at 1966.687 kb on + strand, within DDA3937_RS08710 at 1966.822 kb on + strand, within DDA3937_RS08710 at 1966.822 kb on + strand, within DDA3937_RS08710 at 1966.823 kb on - strand, within DDA3937_RS08710 at 1966.841 kb on - strand, within DDA3937_RS08710 at 1967.019 kb on + strand, within DDA3937_RS08710 at 1967.019 kb on + strand, within DDA3937_RS08710
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 1,963,899 + +1.3 1,963,900 - +0.4 1,963,900 - -1.2 1,963,900 - -0.6 1,963,949 - -1.4 1,963,964 + -3.1 1,963,964 + -1.8 1,963,965 - -1.8 1,963,965 - -3.2 1,963,967 + +0.6 1,963,967 + -1.7 1,963,967 + -1.2 1,963,968 - -2.7 1,963,968 - +0.4 1,963,968 - -0.8 1,963,968 - -0.5 1,963,968 - -0.9 1,963,968 - -1.2 1,963,975 + -2.8 1,963,975 + -0.7 1,963,977 + -0.9 1,963,978 - -1.6 1,963,978 - -1.4 1,963,978 - -2.1 1,964,010 + -1.1 1,964,092 + DDA3937_RS08700 0.17 +2.0 1,964,092 + DDA3937_RS08700 0.17 -2.4 1,964,092 + DDA3937_RS08700 0.17 -1.4 1,964,092 + DDA3937_RS08700 0.17 -0.1 1,964,093 - DDA3937_RS08700 0.18 +2.2 1,964,093 - DDA3937_RS08700 0.18 +0.6 1,964,093 - DDA3937_RS08700 0.18 -2.2 1,964,093 - DDA3937_RS08700 0.18 -1.9 1,964,093 - DDA3937_RS08700 0.18 -2.6 1,964,093 - DDA3937_RS08700 0.18 -3.7 1,964,093 - DDA3937_RS08700 0.18 -1.0 1,964,116 + DDA3937_RS08700 0.20 -0.3 1,964,117 - DDA3937_RS08700 0.20 +0.4 1,964,117 - DDA3937_RS08700 0.20 -1.2 1,964,202 + DDA3937_RS08700 0.30 +1.4 1,964,233 + DDA3937_RS08700 0.34 -1.9 1,964,233 + DDA3937_RS08700 0.34 +2.5 1,964,234 - DDA3937_RS08700 0.34 +0.6 1,964,239 - DDA3937_RS08700 0.34 -2.1 1,964,313 + DDA3937_RS08700 0.43 +0.9 1,964,314 - DDA3937_RS08700 0.43 -0.6 1,964,314 - DDA3937_RS08700 0.43 -0.6 1,964,348 - DDA3937_RS08700 0.47 -0.2 1,964,433 + DDA3937_RS08700 0.56 -0.9 1,964,433 + DDA3937_RS08700 0.56 -0.3 1,964,434 - DDA3937_RS08700 0.57 -1.6 1,964,446 + DDA3937_RS08700 0.58 -0.4 1,964,449 - DDA3937_RS08700 0.58 +0.6 1,964,449 - DDA3937_RS08700 0.58 -3.1 1,964,449 - DDA3937_RS08700 0.58 +0.5 1,964,513 + DDA3937_RS08700 0.66 -2.0 1,964,514 - DDA3937_RS08700 0.66 -1.4 1,964,550 + DDA3937_RS08700 0.70 -1.3 1,964,550 + DDA3937_RS08700 0.70 +1.0 1,964,550 + DDA3937_RS08700 0.70 +1.2 1,964,583 + DDA3937_RS08700 0.74 -1.4 1,964,584 - DDA3937_RS08700 0.74 +1.0 1,964,641 + DDA3937_RS08700 0.80 +2.2 1,964,641 + DDA3937_RS08700 0.80 -1.5 1,964,641 + DDA3937_RS08700 0.80 -2.1 1,964,641 + DDA3937_RS08700 0.80 -2.3 1,964,641 + DDA3937_RS08700 0.80 +0.7 1,964,641 + DDA3937_RS08700 0.80 -0.2 1,964,642 - DDA3937_RS08700 0.80 +0.1 1,964,642 - DDA3937_RS08700 0.80 -1.0 1,964,642 - DDA3937_RS08700 0.80 +0.2 1,964,642 - DDA3937_RS08700 0.80 -1.6 1,964,642 - DDA3937_RS08700 0.80 -1.0 1,964,642 - DDA3937_RS08700 0.80 -0.6 1,964,642 - DDA3937_RS08700 0.80 +0.1 1,964,642 - DDA3937_RS08700 0.80 +0.8 1,964,858 + -0.7 1,964,859 - -0.6 1,965,083 + DDA3937_RS08705 0.22 +1.5 1,965,083 + DDA3937_RS08705 0.22 -1.7 1,965,083 + DDA3937_RS08705 0.22 -0.8 1,965,083 + DDA3937_RS08705 0.22 +1.3 1,965,083 + DDA3937_RS08705 0.22 -0.0 1,965,083 + DDA3937_RS08705 0.22 +0.3 1,965,083 + DDA3937_RS08705 0.22 -1.3 1,965,083 + DDA3937_RS08705 0.22 -1.8 1,965,083 + DDA3937_RS08705 0.22 -0.2 1,965,084 - DDA3937_RS08705 0.22 -1.6 1,965,084 - DDA3937_RS08705 0.22 -0.6 1,965,084 - DDA3937_RS08705 0.22 -0.4 1,965,087 + DDA3937_RS08705 0.22 -0.6 1,965,154 + DDA3937_RS08705 0.27 +2.3 1,965,155 - DDA3937_RS08705 0.27 -1.4 1,965,155 - DDA3937_RS08705 0.27 -1.9 1,965,165 + DDA3937_RS08705 0.28 -0.9 1,965,258 - DDA3937_RS08705 0.36 -1.6 1,965,422 + DDA3937_RS08705 0.49 -0.4 1,965,422 + DDA3937_RS08705 0.49 -3.0 1,965,423 - DDA3937_RS08705 0.49 -2.5 1,965,423 - -1.4 1,965,459 - DDA3937_RS08705 0.52 -0.9 1,965,508 + DDA3937_RS08705 0.56 +0.3 1,965,651 + DDA3937_RS08705 0.68 +0.1 1,965,652 - DDA3937_RS08705 0.68 +0.9 1,966,039 - +1.4 1,966,059 - -2.1 1,966,071 + -1.1 1,966,100 + -0.1 1,966,100 + -0.4 1,966,101 - -0.6 1,966,243 + -2.4 1,966,243 + -0.9 1,966,244 - -1.3 1,966,272 + +1.3 1,966,285 + +0.4 1,966,285 + -0.3 1,966,285 + +1.2 1,966,285 + +1.3 1,966,285 + -1.9 1,966,285 + -2.4 1,966,285 + -0.6 1,966,285 + -1.4 1,966,285 + -1.3 1,966,285 + +1.1 1,966,285 + -0.6 1,966,286 - -1.8 1,966,286 - -1.3 1,966,286 - +2.4 1,966,286 - -1.7 1,966,286 - +0.3 1,966,286 - -1.9 1,966,286 - -0.9 1,966,287 + -1.4 1,966,288 - -1.4 1,966,288 - -1.6 1,966,288 - +0.2 1,966,327 + DDA3937_RS08710 0.10 -0.3 1,966,327 + DDA3937_RS08710 0.10 -0.3 1,966,328 - DDA3937_RS08710 0.10 -1.4 1,966,328 - DDA3937_RS08710 0.10 -1.4 1,966,328 - DDA3937_RS08710 0.10 -0.8 1,966,328 - DDA3937_RS08710 0.10 +1.4 1,966,411 - DDA3937_RS08710 0.16 -2.4 1,966,418 - DDA3937_RS08710 0.16 -2.1 1,966,418 - DDA3937_RS08710 0.16 -0.9 1,966,434 + DDA3937_RS08710 0.17 -1.6 1,966,550 + DDA3937_RS08710 0.24 +3.3 1,966,564 + DDA3937_RS08710 0.25 -1.6 1,966,565 - DDA3937_RS08710 0.25 -0.9 1,966,565 - DDA3937_RS08710 0.25 -1.6 1,966,687 + DDA3937_RS08710 0.33 +0.2 1,966,822 + DDA3937_RS08710 0.41 -0.6 1,966,822 + DDA3937_RS08710 0.41 +1.4 1,966,823 - DDA3937_RS08710 0.41 +2.6 1,966,841 - DDA3937_RS08710 0.43 +1.2 1,967,019 + DDA3937_RS08710 0.54 +0.8 1,967,019 + DDA3937_RS08710 0.54 -1.4
Or see this region's nucleotide sequence