Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08430

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,905,444	+				-1.4
1,905,445	-				+0.4
1,905,445	-				+0.1
1,905,476	+		DDA3937_RS08420	0.18	-1.6
1,905,510	+		DDA3937_RS08420	0.37	-0.2
1,905,609	+				-0.5
1,905,609	+				-2.4
1,905,610	-				+0.2
1,905,610	-				-0.1
1,905,610	-				-2.9
1,905,610	-				+0.4
1,905,625	+				+0.4
1,905,626	-		DDA3937_RS22760	0.11	-0.8
1,905,626	-		DDA3937_RS22760	0.11	-1.6
1,905,626	-		DDA3937_RS22760	0.11	-2.5
1,905,698	+		DDA3937_RS22760	0.81	+0.5
1,905,698	+		DDA3937_RS22760	0.81	-0.2
1,905,698	+		DDA3937_RS22760	0.81	-2.3
1,905,699	-		DDA3937_RS22760	0.82	+1.0
1,905,700	+		DDA3937_RS22760	0.83	+0.1
1,905,700	+		DDA3937_RS22760	0.83	+0.2
1,905,700	+		DDA3937_RS22760	0.83	-1.6
1,905,700	+		DDA3937_RS22760	0.83	+1.8
1,905,700	+		DDA3937_RS22760	0.83	+2.7
1,905,700	+		DDA3937_RS22760	0.83	+0.9
1,905,700	+		DDA3937_RS22760	0.83	-0.4
1,905,700	+		DDA3937_RS22760	0.83	+0.2
1,905,700	+		DDA3937_RS22760	0.83	-0.9
1,905,700	+		DDA3937_RS22760	0.83	+1.4
1,905,700	+		DDA3937_RS22760	0.83	+2.0
1,905,700	+		DDA3937_RS22760	0.83	-2.8
1,905,700	+				-0.2
1,905,700	+		DDA3937_RS22760	0.83	+0.7
1,905,700	+		DDA3937_RS22760	0.83	+0.4
1,905,700	+		DDA3937_RS22760	0.83	-0.5
1,905,700	+		DDA3937_RS22760	0.83	-1.2
1,905,700	+		DDA3937_RS22760	0.83	-0.9
1,905,700	+		DDA3937_RS22760	0.83	-1.6
1,905,700	+		DDA3937_RS22760	0.83	+2.3
1,905,700	+		DDA3937_RS22760	0.83	-1.2
1,905,700	+		DDA3937_RS22760	0.83	+1.5
1,905,700	+		DDA3937_RS22760	0.83	+0.7
1,905,700	+		DDA3937_RS22760	0.83	-0.9
1,905,700	+		DDA3937_RS22760	0.83	-0.6
1,905,700	+		DDA3937_RS22760	0.83	-1.3
1,905,743	+				-0.1
1,905,743	+				-3.4
1,905,746	+				-1.8
1,905,769	-				-1.8
1,905,776	-				+0.5
1,905,802	-				-0.7
1,905,932	+				-1.2
1,905,932	+				+0.9
1,905,932	+				+0.4
1,905,933	-				+0.1
1,905,933	-				-3.4
1,905,933	-				+0.2
1,905,998	-				-2.1
1,906,083	+				-1.8
1,906,083	+				+0.3
1,906,083	+				-1.7
1,906,084	-				-2.5
1,906,095	+				+1.4
1,906,137	+				-1.1
1,906,137	+				-2.4
1,906,137	+				-1.2
1,906,137	+				-2.4
1,906,137	+				+0.0
1,906,137	+				-1.5
1,906,137	+				+0.4
1,906,137	+				+0.9
1,906,138	-				-0.6
1,906,138	-				-0.2
1,906,140	+				-0.4
1,906,285	-		DDA3937_RS08425	0.43	+0.6
1,906,365	+				-1.6
1,906,531	+		DDA3937_RS08430	0.12	-1.4
1,906,531	+		DDA3937_RS08430	0.12	-1.6
1,906,531	+		DDA3937_RS08430	0.12	-0.9
1,906,531	+		DDA3937_RS08430	0.12	-0.0
1,906,531	+		DDA3937_RS08430	0.12	-1.8
1,906,532	-		DDA3937_RS08430	0.12	-0.2
1,906,532	-		DDA3937_RS08430	0.12	+1.7
1,906,533	+		DDA3937_RS08430	0.12	-0.9
1,906,533	+		DDA3937_RS08430	0.12	-1.1
1,906,663	-		DDA3937_RS08430	0.29	-0.9
1,906,663	-		DDA3937_RS08430	0.29	-0.4
1,906,663	-		DDA3937_RS08430	0.29	-0.9
1,906,716	+				-0.9
1,906,716	+		DDA3937_RS08430	0.35	+0.7
1,906,717	-		DDA3937_RS08430	0.35	-0.5
1,906,717	-		DDA3937_RS08430	0.35	+1.4
1,906,887	+		DDA3937_RS08430	0.57	-0.2
1,906,888	-		DDA3937_RS08430	0.57	-0.0
1,906,888	-		DDA3937_RS08430	0.57	-1.4
1,906,943	+		DDA3937_RS08430	0.64	+0.9
1,906,943	+		DDA3937_RS08430	0.64	-1.2
1,906,943	+		DDA3937_RS08430	0.64	-2.9
1,906,965	+		DDA3937_RS08430	0.67	-3.6
1,906,965	+		DDA3937_RS08430	0.67	-0.9
1,906,965	+		DDA3937_RS08430	0.67	+0.0
1,906,965	+		DDA3937_RS08430	0.67	+1.4
1,906,966	-		DDA3937_RS08430	0.67	+0.1
1,906,966	-		DDA3937_RS08430	0.67	-0.6
1,906,966	-		DDA3937_RS08430	0.67	-0.2
1,907,046	+		DDA3937_RS08430	0.77	-0.9
1,907,047	-		DDA3937_RS08430	0.77	-2.9
1,907,047	-		DDA3937_RS08430	0.77	-0.6
1,907,047	-		DDA3937_RS08430	0.77	-1.2
1,907,120	+		DDA3937_RS08430	0.86	-1.6
1,907,120	+		DDA3937_RS08430	0.86	+1.5
1,907,121	-		DDA3937_RS08430	0.86	+0.1
1,907,121	-		DDA3937_RS08430	0.86	-1.2
1,907,241	+				+0.4
1,907,242	-				-0.5
1,907,242	-				-0.9
1,907,282	+				+0.5
1,907,283	-				-1.3
1,907,292	+				+0.9
1,907,293	-				+0.3
1,907,305	+				+2.0
1,907,305	+				-0.2
1,907,306	-				-1.2
1,907,306	-				+1.4
1,907,307	+				-1.9
1,907,307	+				+0.3
1,907,307	+				-0.6
1,907,308	-				-2.2
1,907,308	-				+1.2
1,907,308	-				+0.1
1,907,308	-				-1.6
1,907,382	-		DDA3937_RS08435	0.66	-1.4
1,907,465	+				-0.2
1,907,465	+				-1.4
1,907,465	+				-0.8
1,907,465	+				-2.4
1,907,466	-				+1.2
1,907,466	-				+1.6
1,907,480	+				-1.2
1,907,480	+				-1.6
1,907,480	+				-0.6
1,907,480	+				-0.4
1,907,481	-				-0.8
1,907,481	-				-1.0
1,907,481	-				-0.6
1,907,502	+				+0.4
1,907,502	+				-1.4
1,907,502	+				+1.2
1,907,503	-				-1.4
1,907,503	-				+0.4
1,907,503	-				-0.2
1,907,507	+				+1.4
1,907,565	+				+1.2
1,907,565	+				+3.1
1,907,565	+				-1.4
1,907,571	+				-1.4
1,907,608	-				-1.7
1,907,744	+				-1.6
1,907,860	+				-0.4
1,907,897	-		DDA3937_RS08440	0.16	-1.2
1,907,897	-		DDA3937_RS08440	0.16	+3.8
1,907,940	+		DDA3937_RS08440	0.28	+1.5
1,907,940	+		DDA3937_RS08440	0.28	-2.4
1,907,941	-		DDA3937_RS08440	0.28	+1.0
1,907,941	-		DDA3937_RS08440	0.28	-2.1
1,907,941	-		DDA3937_RS08440	0.28	-0.7
1,907,985	+		DDA3937_RS08440	0.41	-2.1
1,907,986	-		DDA3937_RS08440	0.41	-0.6
1,907,986	-		DDA3937_RS08440	0.41	+1.4
1,908,019	-		DDA3937_RS08440	0.51	+1.0
1,908,037	+		DDA3937_RS08440	0.56	-0.2
1,908,124	+		DDA3937_RS08440	0.81	-3.7
1,908,160	-				+0.1