Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08320

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,878,926	+		DDA3937_RS08315	0.27	+4.0
1,878,926	+				-0.3
1,878,926	+		DDA3937_RS08315	0.27	+0.8
1,879,062	+		DDA3937_RS08315	0.40	-0.4
1,879,062	+		DDA3937_RS08315	0.40	+1.4
1,879,062	+		DDA3937_RS08315	0.40	-1.7
1,879,062	+		DDA3937_RS08315	0.40	+1.0
1,879,063	-		DDA3937_RS08315	0.40	-1.7
1,879,063	-		DDA3937_RS08315	0.40	-1.5
1,879,064	+		DDA3937_RS08315	0.40	+0.5
1,879,064	+		DDA3937_RS08315	0.40	-1.0
1,879,064	+		DDA3937_RS08315	0.40	-1.0
1,879,064	+		DDA3937_RS08315	0.40	+1.0
1,879,064	+		DDA3937_RS08315	0.40	-0.6
1,879,064	+		DDA3937_RS08315	0.40	-1.4
1,879,064	+				+2.1
1,879,064	+		DDA3937_RS08315	0.40	-1.5
1,879,065	-		DDA3937_RS08315	0.40	-1.4
1,879,065	-		DDA3937_RS08315	0.40	+0.3
1,879,065	-		DDA3937_RS08315	0.40	-2.2
1,879,065	-		DDA3937_RS08315	0.40	-1.0
1,879,065	-		DDA3937_RS08315	0.40	+0.7
1,879,065	-		DDA3937_RS08315	0.40	-1.7
1,879,065	-		DDA3937_RS08315	0.40	-2.5
1,879,065	-		DDA3937_RS08315	0.40	+0.0
1,879,065	-		DDA3937_RS08315	0.40	-3.1
1,879,110	+				-0.3
1,879,110	+		DDA3937_RS08315	0.45	-2.0
1,879,110	+		DDA3937_RS08315	0.45	+1.3
1,879,110	+		DDA3937_RS08315	0.45	-0.6
1,879,111	-		DDA3937_RS08315	0.45	-2.5
1,879,111	-		DDA3937_RS08315	0.45	-1.0
1,879,180	+		DDA3937_RS08315	0.52	-1.0
1,879,180	+		DDA3937_RS08315	0.52	-2.6
1,879,239	-		DDA3937_RS08315	0.58	-1.0
1,879,308	+		DDA3937_RS08315	0.65	-0.5
1,879,308	+		DDA3937_RS08315	0.65	+0.4
1,879,308	+		DDA3937_RS08315	0.65	+0.5
1,879,308	+		DDA3937_RS08315	0.65	-3.1
1,879,309	-		DDA3937_RS08315	0.65	+0.9
1,879,309	-		DDA3937_RS08315	0.65	-2.0
1,879,309	-		DDA3937_RS08315	0.65	+1.9
1,879,309	-		DDA3937_RS08315	0.65	+1.3
1,879,310	+		DDA3937_RS08315	0.65	+0.8
1,879,310	+		DDA3937_RS08315	0.65	-0.4
1,879,310	+		DDA3937_RS08315	0.65	-1.9
1,879,330	-		DDA3937_RS08315	0.67	-1.8
1,879,346	+		DDA3937_RS08315	0.68	+0.0
1,879,346	+		DDA3937_RS08315	0.68	+1.3
1,879,346	+		DDA3937_RS08315	0.68	+0.2
1,879,347	-		DDA3937_RS08315	0.68	+2.2
1,879,347	-		DDA3937_RS08315	0.68	-0.2
1,879,347	-		DDA3937_RS08315	0.68	+2.2
1,879,371	+		DDA3937_RS08315	0.71	+0.9
1,879,371	+		DDA3937_RS08315	0.71	+1.5
1,879,371	+		DDA3937_RS08315	0.71	-0.3
1,879,371	+		DDA3937_RS08315	0.71	-2.9
1,879,371	+		DDA3937_RS08315	0.71	-1.9
1,879,371	+		DDA3937_RS08315	0.71	-1.3
1,879,371	+		DDA3937_RS08315	0.71	+0.4
1,879,372	-		DDA3937_RS08315	0.71	-0.6
1,879,372	-		DDA3937_RS08315	0.71	-2.2
1,879,372	-		DDA3937_RS08315	0.71	-3.0
1,879,372	-		DDA3937_RS08315	0.71	-1.5
1,879,372	-		DDA3937_RS08315	0.71	+0.6
1,879,372	-		DDA3937_RS08315	0.71	-3.8
1,879,372	-		DDA3937_RS08315	0.71	+0.9
1,879,372	-		DDA3937_RS08315	0.71	-0.6
1,879,372	-		DDA3937_RS08315	0.71	+1.3
1,879,372	-		DDA3937_RS08315	0.71	+1.9
1,879,372	-		DDA3937_RS08315	0.71	-0.2
1,879,372	-		DDA3937_RS08315	0.71	+0.6
1,879,379	+		DDA3937_RS08315	0.72	+3.8
1,879,380	-		DDA3937_RS08315	0.72	+0.2
1,879,394	+		DDA3937_RS08315	0.73	-0.3
1,879,394	+		DDA3937_RS08315	0.73	+3.3
1,879,395	-		DDA3937_RS08315	0.73	-0.9
1,879,395	-		DDA3937_RS08315	0.73	+0.7
1,879,395	-		DDA3937_RS08315	0.73	-1.0
1,879,397	+				-0.7
1,879,397	+		DDA3937_RS08315	0.73	-0.0
1,879,397	+		DDA3937_RS08315	0.73	+0.2
1,879,398	-		DDA3937_RS08315	0.74	-2.5
1,879,398	-		DDA3937_RS08315	0.74	-3.4
1,879,484	-		DDA3937_RS08315	0.82	-2.8
1,879,484	-		DDA3937_RS08315	0.82	-2.3
1,879,484	-		DDA3937_RS08315	0.82	-3.0
1,879,554	+		DDA3937_RS08315	0.89	-1.9
1,879,564	+				+1.7
1,879,564	+				+0.0
1,879,565	-				+2.5
1,879,565	-				-0.1
1,879,638	+				-1.0
1,879,638	+				+1.0
1,879,662	+				+0.6
1,879,662	+				+0.9
1,879,662	+				+0.4
1,879,754	+				+1.8
1,879,755	-				-2.3
1,879,761	+				+2.5
1,879,762	-				-2.9
1,879,765	+				-0.5
1,879,766	-				+0.8
1,879,766	-				-0.7
1,879,766	-				+1.0
1,879,766	-				-2.6
1,879,766	-				-2.4
1,879,769	+				-2.1
1,879,769	+				-0.7
1,879,769	+				-1.3
1,879,769	+				+2.3
1,879,769	+				+0.9
1,879,769	+				-0.3
1,879,769	+				-0.6
1,879,770	-				-1.5
1,879,770	-				-0.3
1,879,799	+				+0.3
1,879,799	+				-1.9
1,879,800	-				-2.6
1,879,800	-				-0.6
1,879,800	-				-0.0
1,879,827	+				+2.0
1,879,827	+				-0.9
1,879,828	-				-4.0
1,879,828	-				-1.5
1,879,828	-				+0.3
1,879,850	+				-3.2
1,879,850	+				+1.5
1,879,886	-				+0.9
1,879,886	-				+0.9
1,879,886	-				+1.8
1,879,886	-				-1.7
1,879,886	-				+3.0
1,879,886	-				+0.3
1,879,887	+				-0.1
1,879,887	+				-2.7
1,879,887	+				-1.3
1,879,887	+				-0.3
1,879,888	-				-1.8
1,879,888	-				+0.8
1,879,888	-				-1.3
1,879,888	-				+1.2
1,879,888	-				-2.1
1,879,888	-				-1.0
1,879,888	-				-1.1
1,879,934	-				+0.3
1,879,934	-				+0.6
1,879,997	+		DDA3937_RS08320	0.16	-2.4
1,880,014	+				-0.7
1,880,014	+		DDA3937_RS08320	0.18	-0.9
1,880,015	-		DDA3937_RS08320	0.18	-0.8
1,880,015	-		DDA3937_RS08320	0.18	+0.6
1,880,015	-		DDA3937_RS08320	0.18	+1.2
1,880,015	-		DDA3937_RS08320	0.18	+1.3
1,880,061	+		DDA3937_RS08320	0.25	-0.7
1,880,061	+		DDA3937_RS08320	0.25	+1.0
1,880,062	-		DDA3937_RS08320	0.25	-0.0
1,880,062	-		DDA3937_RS08320	0.25	-1.9
1,880,062	-		DDA3937_RS08320	0.25	-2.5
1,880,070	+		DDA3937_RS08320	0.26	-1.6
1,880,103	-		DDA3937_RS08320	0.30	+0.4
1,880,103	-		DDA3937_RS08320	0.30	-0.5
1,880,110	+		DDA3937_RS08320	0.31	-2.5
1,880,110	+		DDA3937_RS08320	0.31	-0.9
1,880,110	+		DDA3937_RS08320	0.31	-1.9
1,880,110	+		DDA3937_RS08320	0.31	+0.2
1,880,110	+		DDA3937_RS08320	0.31	-1.5
1,880,110	+		DDA3937_RS08320	0.31	-1.0
1,880,110	+		DDA3937_RS08320	0.31	-0.3
1,880,111	-		DDA3937_RS08320	0.32	-0.7
1,880,160	+		DDA3937_RS08320	0.38	-2.3
1,880,160	+		DDA3937_RS08320	0.38	-0.3
1,880,161	-		DDA3937_RS08320	0.38	-1.7
1,880,161	-		DDA3937_RS08320	0.38	+1.0
1,880,161	-		DDA3937_RS08320	0.38	-0.8
1,880,202	+				+0.3
1,880,202	+		DDA3937_RS08320	0.44	-0.7
1,880,202	+		DDA3937_RS08320	0.44	-0.3
1,880,203	-		DDA3937_RS08320	0.44	-4.3
1,880,203	-		DDA3937_RS08320	0.44	-0.4
1,880,203	-		DDA3937_RS08320	0.44	+0.5
1,880,250	+		DDA3937_RS08320	0.51	-2.4
1,880,251	-		DDA3937_RS08320	0.51	+0.3
1,880,365	+		DDA3937_RS08320	0.67	-2.6
1,880,366	-		DDA3937_RS08320	0.67	-1.0
1,880,366	-		DDA3937_RS08320	0.67	-1.6
1,880,366	-				+0.3
1,880,379	+		DDA3937_RS08320	0.68	-0.7
1,880,379	+		DDA3937_RS08320	0.68	+1.0
1,880,379	+		DDA3937_RS08320	0.68	+0.0
1,880,380	-		DDA3937_RS08320	0.69	-2.0
1,880,380	-		DDA3937_RS08320	0.69	-2.0
1,880,458	+				+0.3
1,880,459	-		DDA3937_RS08320	0.79	-0.0
1,880,525	-		DDA3937_RS08320	0.89	-1.1
1,880,525	-		DDA3937_RS08320	0.89	+0.7
1,880,592	+				-0.6
1,880,593	-				+0.2
1,880,593	-				-1.2
1,880,599	+				-1.3
1,880,600	-				-2.3
1,880,607	+				+0.5
1,880,607	+				+0.7
1,880,608	-				-1.7
1,880,608	-				-2.6
1,880,613	+				-0.5
1,880,613	+				-2.9
1,880,613	+				-0.6
1,880,613	+				+1.3
1,880,613	+				-3.2
1,880,613	+				+2.9
1,880,613	+				-0.9
1,880,613	+				+1.6
1,880,613	+				-0.0
1,880,613	+				-2.4
1,880,613	+				-1.0
1,880,613	+				-0.5
1,880,613	+				-2.9
1,880,613	+				-2.5
1,880,613	+				+0.9
1,880,613	+				-1.7
1,880,613	+				-1.0
1,880,614	-				+0.9
1,880,614	-				-1.3
1,880,614	-				-2.5
1,880,614	-				-1.0
1,880,614	-				-0.7
1,880,614	-				-1.0
1,880,614	-				+1.9
1,880,614	-				+0.3
1,880,614	-				-2.4
1,880,614	-				-0.9
1,880,614	-				-1.5
1,880,614	-				+1.6
1,880,614	-				-0.2
1,880,615	+				-0.3
1,880,615	+				-0.1
1,880,615	+				+0.3
1,880,616	-				+0.3
1,880,616	-				-1.0
1,880,633	+				-3.2
1,880,633	+				+1.0
1,880,634	-				+0.8
1,880,634	-				+1.5
1,880,637	+				-1.6
1,880,637	+				-1.0
1,880,638	-				+0.1
1,880,638	-				+2.4
1,880,640	+				+1.8
1,880,640	+				-1.0
1,880,640	+				-2.4
1,880,641	-				+0.4
1,880,641	-				+2.0
1,880,641	-				-2.6
1,880,641	-				+1.1
1,880,700	+				+1.2
1,880,730	+				+0.4
1,880,823	-		DDA3937_RS08325	0.13	+0.0
1,880,934	+		DDA3937_RS08325	0.27	-3.4
1,880,934	+		DDA3937_RS08325	0.27	+1.5
1,880,934	+		DDA3937_RS08325	0.27	+0.9
1,880,934	+		DDA3937_RS08325	0.27	-2.5
1,880,934	+		DDA3937_RS08325	0.27	-0.3
1,880,935	-		DDA3937_RS08325	0.28	-2.1
1,880,935	-		DDA3937_RS08325	0.28	+0.3
1,880,935	-		DDA3937_RS08325	0.28	-1.9
1,880,945	+		DDA3937_RS08325	0.29	-1.9
1,880,946	-		DDA3937_RS08325	0.29	-1.6
1,880,946	-		DDA3937_RS08325	0.29	-1.2
1,880,946	-		DDA3937_RS08325	0.29	+0.1
1,880,982	-		DDA3937_RS08325	0.34	-1.0
1,881,036	+		DDA3937_RS08325	0.41	-0.7
1,881,037	-		DDA3937_RS08325	0.41	-0.7
1,881,037	-		DDA3937_RS08325	0.41	+0.2
1,881,037	-		DDA3937_RS08325	0.41	-0.7
1,881,037	-		DDA3937_RS08325	0.41	-1.1
1,881,075	+		DDA3937_RS08325	0.46	+1.4
1,881,075	+		DDA3937_RS08325	0.46	-2.0
1,881,075	+		DDA3937_RS08325	0.46	+0.8
1,881,076	-		DDA3937_RS08325	0.46	+3.4
1,881,076	-		DDA3937_RS08325	0.46	-1.7
1,881,090	+		DDA3937_RS08325	0.48	-0.2
1,881,133	-		DDA3937_RS08325	0.53	+1.4
1,881,178	-		DDA3937_RS08325	0.59	-0.8
1,881,178	-		DDA3937_RS08325	0.59	-1.0
1,881,202	-		DDA3937_RS08325	0.62	-1.9
1,881,213	+		DDA3937_RS08325	0.64	+1.2
1,881,214	-		DDA3937_RS08325	0.64	-1.3
1,881,270	+		DDA3937_RS08325	0.71	+1.3
1,881,270	+		DDA3937_RS08325	0.71	+2.0
1,881,270	+		DDA3937_RS08325	0.71	-2.7
1,881,270	+		DDA3937_RS08325	0.71	-3.0
1,881,271	-		DDA3937_RS08325	0.71	-2.3
1,881,271	-		DDA3937_RS08325	0.71	+0.6
1,881,357	+		DDA3937_RS08325	0.83	-1.9
1,881,357	+		DDA3937_RS08325	0.83	+0.3
1,881,358	-		DDA3937_RS08325	0.83	+2.1
1,881,359	+		DDA3937_RS08325	0.83	-0.9
1,881,359	+		DDA3937_RS08325	0.83	-1.5
1,881,360	-		DDA3937_RS08325	0.83	+0.4
1,881,360	-		DDA3937_RS08325	0.83	-0.2
1,881,360	-		DDA3937_RS08325	0.83	-2.5
1,881,360	-		DDA3937_RS08325	0.83	-0.5
1,881,360	-		DDA3937_RS08325	0.83	-0.3
1,881,360	-		DDA3937_RS08325	0.83	+1.3
1,881,360	-		DDA3937_RS08325	0.83	+1.2
1,881,390	+		DDA3937_RS08325	0.87	+0.4
1,881,391	-		DDA3937_RS08325	0.87	-1.9
1,881,398	-		DDA3937_RS08325	0.88	-1.4
1,881,528	+				-2.0