Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07945

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,799,837	+		DDA3937_RS07940	0.57	+0.9
1,799,837	+		DDA3937_RS07940	0.57	-0.6
1,799,838	-		DDA3937_RS07940	0.57	-0.7
1,799,838	-		DDA3937_RS07940	0.57	+1.0
1,799,838	-		DDA3937_RS07940	0.57	-0.4
1,799,844	+		DDA3937_RS07940	0.58	-0.7
1,799,844	+		DDA3937_RS07940	0.58	-1.5
1,799,916	+				-0.3
1,799,988	+		DDA3937_RS07940	0.64	-0.8
1,799,988	+		DDA3937_RS07940	0.64	-0.6
1,799,989	-		DDA3937_RS07940	0.64	-2.7
1,799,989	-		DDA3937_RS07940	0.64	-1.0
1,799,989	-		DDA3937_RS07940	0.64	+1.7
1,799,989	-		DDA3937_RS07940	0.64	+1.0
1,799,989	-		DDA3937_RS07940	0.64	-2.0
1,800,017	+		DDA3937_RS07940	0.65	-1.9
1,800,025	-		DDA3937_RS07940	0.65	-0.7
1,800,132	+		DDA3937_RS07940	0.70	-1.4
1,800,132	+		DDA3937_RS07940	0.70	-1.5
1,800,132	+		DDA3937_RS07940	0.70	-1.0
1,800,132	+		DDA3937_RS07940	0.70	+0.8
1,800,132	+		DDA3937_RS07940	0.70	-1.9
1,800,132	+		DDA3937_RS07940	0.70	-0.4
1,800,133	-		DDA3937_RS07940	0.70	-1.2
1,800,133	-		DDA3937_RS07940	0.70	-1.9
1,800,133	-		DDA3937_RS07940	0.70	+2.3
1,800,279	+		DDA3937_RS07940	0.76	+2.0
1,800,279	+		DDA3937_RS07940	0.76	-1.2
1,800,279	+		DDA3937_RS07940	0.76	+0.5
1,800,279	+		DDA3937_RS07940	0.76	+0.1
1,800,390	+		DDA3937_RS07940	0.81	-3.5
1,800,390	+		DDA3937_RS07940	0.81	+0.3
1,800,478	+		DDA3937_RS07940	0.85	-2.0
1,800,478	+		DDA3937_RS07940	0.85	-0.7
1,800,501	+		DDA3937_RS07940	0.86	+0.0
1,800,501	+		DDA3937_RS07940	0.86	-1.6
1,800,501	+		DDA3937_RS07940	0.86	-2.0
1,800,501	+		DDA3937_RS07940	0.86	-1.5
1,800,502	-		DDA3937_RS07940	0.86	-1.0
1,800,502	-		DDA3937_RS07940	0.86	-1.7
1,800,539	+		DDA3937_RS07940	0.88	-1.5
1,800,539	+		DDA3937_RS07940	0.88	-0.9
1,800,540	-		DDA3937_RS07940	0.88	+0.6
1,800,588	+		DDA3937_RS07940	0.90	-2.2
1,800,720	-				-0.7
1,800,726	+				-0.9
1,800,726	+				-0.5
1,800,727	-				-0.3
1,800,729	+				-1.7
1,800,730	-				-2.3
1,800,730	-				-0.1
1,800,753	+				-0.1
1,800,811	-				+0.9
1,800,811	-				-0.3
1,800,819	+				+0.8
1,800,819	+				-2.2
1,800,819	+				-0.3
1,800,819	+				-1.0
1,800,820	-				-0.1
1,800,820	-				-0.9
1,800,820	-				-2.0
1,800,820	-				-2.9
1,800,825	+				+2.1
1,800,846	+				-2.6
1,800,846	+				-0.0
1,800,846	+				-1.6
1,800,847	-				+1.5
1,801,373	+		DDA3937_RS07945	0.20	+0.7
1,801,373	+		DDA3937_RS07945	0.20	+0.7
1,801,552	+		DDA3937_RS07945	0.26	+0.3
1,801,552	+		DDA3937_RS07945	0.26	-2.9
1,801,586	+		DDA3937_RS07945	0.27	-0.7
1,801,587	-		DDA3937_RS07945	0.27	+0.3
1,801,587	-		DDA3937_RS07945	0.27	-1.5
1,801,596	+		DDA3937_RS07945	0.28	+1.8
1,801,596	+		DDA3937_RS07945	0.28	-0.7
1,801,596	+		DDA3937_RS07945	0.28	+0.4
1,801,596	+		DDA3937_RS07945	0.28	+0.3
1,801,596	+		DDA3937_RS07945	0.28	-2.9
1,801,596	+		DDA3937_RS07945	0.28	+0.9
1,801,597	-		DDA3937_RS07945	0.28	+1.8
1,801,597	-		DDA3937_RS07945	0.28	+0.5
1,801,597	-		DDA3937_RS07945	0.28	-1.6
1,801,597	-		DDA3937_RS07945	0.28	-1.9
1,801,597	-		DDA3937_RS07945	0.28	+0.6
1,801,597	-		DDA3937_RS07945	0.28	-0.3
1,801,600	+		DDA3937_RS07945	0.28	-2.1
1,801,600	+		DDA3937_RS07945	0.28	+0.2
1,801,600	+		DDA3937_RS07945	0.28	+0.7
1,801,600	+		DDA3937_RS07945	0.28	-1.2
1,801,601	-		DDA3937_RS07945	0.28	+1.5
1,801,601	-		DDA3937_RS07945	0.28	+1.0
1,801,601	-		DDA3937_RS07945	0.28	-1.2
1,801,695	+		DDA3937_RS07945	0.31	+0.7
1,801,695	+		DDA3937_RS07945	0.31	-0.5
1,801,849	+		DDA3937_RS07945	0.37	+0.3
1,801,849	+				+0.3
1,801,849	+		DDA3937_RS07945	0.37	+0.3
1,801,850	-		DDA3937_RS07945	0.37	-2.2
1,801,850	-		DDA3937_RS07945	0.37	+3.2
1,801,850	-		DDA3937_RS07945	0.37	+0.4
1,801,850	-		DDA3937_RS07945	0.37	-1.0
1,801,850	-		DDA3937_RS07945	0.37	+0.5
1,801,850	-		DDA3937_RS07945	0.37	-0.8
1,801,851	+		DDA3937_RS07945	0.37	+0.6
1,801,851	+				-0.3
1,801,851	+		DDA3937_RS07945	0.37	-2.9
1,801,852	-		DDA3937_RS07945	0.37	-2.7
1,801,852	-		DDA3937_RS07945	0.37	-0.1
1,801,852	-		DDA3937_RS07945	0.37	-0.8
1,801,852	-				-0.3
1,801,940	+		DDA3937_RS07945	0.40	-0.7
1,801,978	+		DDA3937_RS07945	0.41	-1.3
1,801,979	-		DDA3937_RS07945	0.41	-0.3
1,802,036	-		DDA3937_RS07945	0.43	+0.5
1,802,134	+		DDA3937_RS07945	0.47	-1.3
1,802,135	-				+2.9
1,802,194	+		DDA3937_RS07945	0.49	-0.2
1,802,194	+		DDA3937_RS07945	0.49	-2.9
1,802,195	-		DDA3937_RS07945	0.49	-0.9
1,802,203	+		DDA3937_RS07945	0.50	-1.0
1,802,444	-		DDA3937_RS07945	0.58	+0.3
1,802,444	-		DDA3937_RS07945	0.58	+2.0
1,802,455	+		DDA3937_RS07945	0.59	-2.7
1,802,456	-		DDA3937_RS07945	0.59	+1.3
1,802,456	-		DDA3937_RS07945	0.59	-1.0
1,802,521	+		DDA3937_RS07945	0.61	+1.7
1,802,521	+		DDA3937_RS07945	0.61	+0.3
1,802,521	+		DDA3937_RS07945	0.61	-2.3
1,802,521	+		DDA3937_RS07945	0.61	-1.2
1,802,522	-		DDA3937_RS07945	0.61	+0.3
1,802,522	-		DDA3937_RS07945	0.61	+2.2
1,802,522	-		DDA3937_RS07945	0.61	-0.7
1,802,522	-		DDA3937_RS07945	0.61	-0.3
1,802,522	-		DDA3937_RS07945	0.61	-3.0
1,802,549	-		DDA3937_RS07945	0.62	+2.6
1,802,549	-		DDA3937_RS07945	0.62	-2.2
1,802,608	+		DDA3937_RS07945	0.64	+0.1
1,802,608	+		DDA3937_RS07945	0.64	+0.2
1,802,608	+		DDA3937_RS07945	0.64	+0.6
1,802,611	+		DDA3937_RS07945	0.64	-0.3
1,802,611	+		DDA3937_RS07945	0.64	-1.6
1,802,611	+		DDA3937_RS07945	0.64	-1.0
1,802,611	+		DDA3937_RS07945	0.64	+0.5
1,802,611	+		DDA3937_RS07945	0.64	+1.4
1,802,612	-		DDA3937_RS07945	0.64	-2.2
1,802,612	-		DDA3937_RS07945	0.64	+1.3
1,802,612	-		DDA3937_RS07945	0.64	+3.3
1,802,612	-		DDA3937_RS07945	0.64	+1.2
1,802,800	+		DDA3937_RS07945	0.71	+0.2
1,802,801	-		DDA3937_RS07945	0.71	-0.2
1,802,932	+		DDA3937_RS07945	0.76	+0.3
1,803,027	+		DDA3937_RS07945	0.79	-1.5
1,803,028	-		DDA3937_RS07945	0.79	-0.2
1,803,129	+		DDA3937_RS07945	0.83	+1.8
1,803,129	+		DDA3937_RS07945	0.83	+3.2
1,803,129	+		DDA3937_RS07945	0.83	+0.4
1,803,226	+		DDA3937_RS07945	0.86	+1.7
1,803,238	+		DDA3937_RS07945	0.87	-0.6
1,803,239	-		DDA3937_RS07945	0.87	-1.3
1,803,451	+				-0.3
1,803,598	+				-1.0
1,803,599	-				-0.6
1,803,599	-				-2.3
1,803,604	+				-0.7
1,803,604	+				+0.5
1,803,604	+				+1.6
1,803,605	-				-2.2
1,803,629	-				-0.0
1,803,629	-				-0.4
1,803,691	+				-0.3
1,803,691	+				+0.8
1,803,691	+				-2.4
1,803,691	+				-1.2
1,803,691	+				+0.6
1,803,691	+				-0.5
1,803,692	-				-1.5
1,803,692	-				+0.9
1,803,692	-				-1.7
1,803,692	-				-0.4
1,803,692	-				-3.0
1,803,704	+				-0.9
1,803,704	+				-0.9
1,803,705	-				-0.3
1,803,705	-				+0.9
1,803,759	+				-1.2
1,803,760	-				+0.2
1,803,760	-				+0.7
1,803,761	+				+2.8
1,803,761	+				+0.9
1,803,762	-				+1.6
1,803,762	-				-1.9
1,803,773	+				-2.4
1,803,773	+				-1.6
1,803,845	+		DDA3937_RS07950	0.14	+1.6
1,803,846	-		DDA3937_RS07950	0.14	-0.8
1,803,953	+		DDA3937_RS07950	0.29	-1.3
1,803,953	+		DDA3937_RS07950	0.29	+0.5
1,803,953	+		DDA3937_RS07950	0.29	+3.0
1,803,954	-		DDA3937_RS07950	0.29	-1.5
1,803,954	-		DDA3937_RS07950	0.29	-1.3
1,804,029	+		DDA3937_RS07950	0.40	-2.0
1,804,029	+		DDA3937_RS07950	0.40	+1.0
1,804,030	-		DDA3937_RS07950	0.40	-2.3
1,804,042	+		DDA3937_RS07950	0.42	-0.3
1,804,042	+		DDA3937_RS07950	0.42	-1.7
1,804,042	+		DDA3937_RS07950	0.42	-1.0
1,804,042	+		DDA3937_RS07950	0.42	+1.3
1,804,042	+		DDA3937_RS07950	0.42	+2.0
1,804,042	+		DDA3937_RS07950	0.42	+4.2
1,804,042	+		DDA3937_RS07950	0.42	-0.5
1,804,042	+		DDA3937_RS07950	0.42	-1.0
1,804,043	-		DDA3937_RS07950	0.42	-2.5
1,804,043	-		DDA3937_RS07950	0.42	-2.6
1,804,043	-		DDA3937_RS07950	0.42	-2.5
1,804,153	-		DDA3937_RS07950	0.57	-2.2
1,804,170	+		DDA3937_RS07950	0.59	+0.5
1,804,170	+		DDA3937_RS07950	0.59	+0.8
1,804,170	+		DDA3937_RS07950	0.59	+2.9
1,804,171	-		DDA3937_RS07950	0.60	-0.0
1,804,171	-		DDA3937_RS07950	0.60	+0.5
1,804,171	-		DDA3937_RS07950	0.60	+1.9
1,804,173	+		DDA3937_RS07950	0.60	-1.9
1,804,173	+				+1.7
1,804,173	+		DDA3937_RS07950	0.60	-1.9
1,804,174	-		DDA3937_RS07950	0.60	+0.1
1,804,174	-		DDA3937_RS07950	0.60	-1.0
1,804,174	-		DDA3937_RS07950	0.60	-1.3
1,804,191	-		DDA3937_RS07950	0.62	-0.7
1,804,221	+		DDA3937_RS07950	0.67	-1.5
1,804,221	+		DDA3937_RS07950	0.67	+1.3
1,804,221	+		DDA3937_RS07950	0.67	-2.8
1,804,221	+		DDA3937_RS07950	0.67	+2.6
1,804,222	-		DDA3937_RS07950	0.67	-2.4
1,804,222	-		DDA3937_RS07950	0.67	+0.8
1,804,222	-		DDA3937_RS07950	0.67	-2.2
1,804,222	-		DDA3937_RS07950	0.67	+0.3
1,804,371	+				+0.3
1,804,395	+				-2.2
1,804,396	-				-1.4
1,804,458	+				-2.2
1,804,459	-				-0.3
1,804,577	+		DDA3937_RS07955	0.14	+1.4