Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07940

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,797,635	-		DDA3937_RS07935	0.22	-1.3
1,797,695	+		DDA3937_RS07935	0.28	-0.1
1,797,695	+		DDA3937_RS07935	0.28	-2.4
1,797,696	-		DDA3937_RS07935	0.28	-0.7
1,797,696	-		DDA3937_RS07935	0.28	-3.7
1,797,715	+		DDA3937_RS07935	0.30	+3.3
1,797,782	+		DDA3937_RS07935	0.37	-0.9
1,797,782	+				+0.3
1,797,782	+		DDA3937_RS07935	0.37	-0.2
1,797,783	-		DDA3937_RS07935	0.37	-0.9
1,797,783	-		DDA3937_RS07935	0.37	-0.7
1,797,931	+		DDA3937_RS07935	0.51	+0.2
1,797,931	+		DDA3937_RS07935	0.51	-1.9
1,798,141	+		DDA3937_RS07935	0.72	-2.3
1,798,141	+		DDA3937_RS07935	0.72	-1.4
1,798,142	-		DDA3937_RS07935	0.72	+0.9
1,798,144	+		DDA3937_RS07935	0.72	-0.1
1,798,145	-		DDA3937_RS07935	0.72	+1.3
1,798,149	+		DDA3937_RS07935	0.73	+0.3
1,798,200	-		DDA3937_RS07935	0.78	-0.5
1,798,200	-		DDA3937_RS07935	0.78	+1.6
1,798,200	-		DDA3937_RS07935	0.78	-1.0
1,798,200	-		DDA3937_RS07935	0.78	-3.9
1,798,200	-		DDA3937_RS07935	0.78	-1.5
1,798,200	-		DDA3937_RS07935	0.78	+0.8
1,798,200	-		DDA3937_RS07935	0.78	+1.5
1,798,200	-		DDA3937_RS07935	0.78	-0.5
1,798,202	-		DDA3937_RS07935	0.78	-0.5
1,798,284	+		DDA3937_RS07935	0.86	+0.9
1,798,347	-				-1.3
1,798,367	-				-2.5
1,798,427	-				+0.3
1,798,427	-				-1.2
1,798,441	-				+0.3
1,798,460	-				-1.0
1,798,463	+				+2.8
1,798,555	+				-2.9
1,798,555	+				+1.3
1,798,555	+				-0.6
1,798,556	-				+1.6
1,798,948	-		DDA3937_RS07940	0.19	+0.9
1,798,948	-		DDA3937_RS07940	0.19	+2.1
1,798,948	-		DDA3937_RS07940	0.19	-2.0
1,799,031	+		DDA3937_RS07940	0.22	-2.5
1,799,039	+		DDA3937_RS07940	0.23	-1.9
1,799,060	-		DDA3937_RS07940	0.24	-0.6
1,799,060	-		DDA3937_RS07940	0.24	-1.5
1,799,130	+		DDA3937_RS07940	0.27	+0.3
1,799,223	+		DDA3937_RS07940	0.31	+0.7
1,799,224	-		DDA3937_RS07940	0.31	+0.4
1,799,224	-		DDA3937_RS07940	0.31	-1.5
1,799,230	+		DDA3937_RS07940	0.31	-1.3
1,799,230	+		DDA3937_RS07940	0.31	+1.4
1,799,231	-		DDA3937_RS07940	0.31	-0.2
1,799,231	-		DDA3937_RS07940	0.31	-2.9
1,799,231	-		DDA3937_RS07940	0.31	-1.4
1,799,331	+		DDA3937_RS07940	0.35	-2.2
1,799,532	+		DDA3937_RS07940	0.44	-0.3
1,799,532	+		DDA3937_RS07940	0.44	-0.7
1,799,534	+		DDA3937_RS07940	0.44	+1.1
1,799,562	+		DDA3937_RS07940	0.45	-0.7
1,799,611	-		DDA3937_RS07940	0.48	-0.9
1,799,695	-		DDA3937_RS07940	0.51	-1.5
1,799,695	-		DDA3937_RS07940	0.51	-0.5
1,799,751	+		DDA3937_RS07940	0.54	-1.4
1,799,752	-		DDA3937_RS07940	0.54	-1.4
1,799,754	+		DDA3937_RS07940	0.54	+2.0
1,799,755	-		DDA3937_RS07940	0.54	-0.5
1,799,755	-		DDA3937_RS07940	0.54	+0.3
1,799,755	-		DDA3937_RS07940	0.54	+2.6
1,799,804	+		DDA3937_RS07940	0.56	-2.2
1,799,812	+		DDA3937_RS07940	0.56	+0.5
1,799,812	+		DDA3937_RS07940	0.56	+2.0
1,799,813	-		DDA3937_RS07940	0.56	+2.8
1,799,813	-		DDA3937_RS07940	0.56	-1.7
1,799,837	+		DDA3937_RS07940	0.57	+0.9
1,799,837	+		DDA3937_RS07940	0.57	-0.6
1,799,838	-		DDA3937_RS07940	0.57	-0.7
1,799,838	-		DDA3937_RS07940	0.57	+1.0
1,799,838	-		DDA3937_RS07940	0.57	-0.4
1,799,844	+		DDA3937_RS07940	0.58	-0.7
1,799,844	+		DDA3937_RS07940	0.58	-1.5
1,799,916	+				-0.3
1,799,988	+		DDA3937_RS07940	0.64	-0.8
1,799,988	+		DDA3937_RS07940	0.64	-0.6
1,799,989	-		DDA3937_RS07940	0.64	-2.7
1,799,989	-		DDA3937_RS07940	0.64	-1.0
1,799,989	-		DDA3937_RS07940	0.64	+1.7
1,799,989	-		DDA3937_RS07940	0.64	+1.0
1,799,989	-		DDA3937_RS07940	0.64	-2.0
1,800,017	+		DDA3937_RS07940	0.65	-1.9
1,800,025	-		DDA3937_RS07940	0.65	-0.7
1,800,132	+		DDA3937_RS07940	0.70	-1.4
1,800,132	+		DDA3937_RS07940	0.70	-1.5
1,800,132	+		DDA3937_RS07940	0.70	-1.0
1,800,132	+		DDA3937_RS07940	0.70	+0.8
1,800,132	+		DDA3937_RS07940	0.70	-1.9
1,800,132	+		DDA3937_RS07940	0.70	-0.4
1,800,133	-		DDA3937_RS07940	0.70	-1.2
1,800,133	-		DDA3937_RS07940	0.70	-1.9
1,800,133	-		DDA3937_RS07940	0.70	+2.3
1,800,279	+		DDA3937_RS07940	0.76	+2.0
1,800,279	+		DDA3937_RS07940	0.76	-1.2
1,800,279	+		DDA3937_RS07940	0.76	+0.5
1,800,279	+		DDA3937_RS07940	0.76	+0.1
1,800,390	+		DDA3937_RS07940	0.81	-3.5
1,800,390	+		DDA3937_RS07940	0.81	+0.3
1,800,478	+		DDA3937_RS07940	0.85	-2.0
1,800,478	+		DDA3937_RS07940	0.85	-0.7
1,800,501	+		DDA3937_RS07940	0.86	+0.0
1,800,501	+		DDA3937_RS07940	0.86	-1.6
1,800,501	+		DDA3937_RS07940	0.86	-2.0
1,800,501	+		DDA3937_RS07940	0.86	-1.5
1,800,502	-		DDA3937_RS07940	0.86	-1.0
1,800,502	-		DDA3937_RS07940	0.86	-1.7
1,800,539	+		DDA3937_RS07940	0.88	-1.5
1,800,539	+		DDA3937_RS07940	0.88	-0.9
1,800,540	-		DDA3937_RS07940	0.88	+0.6
1,800,588	+		DDA3937_RS07940	0.90	-2.2
1,800,720	-				-0.7
1,800,726	+				-0.9
1,800,726	+				-0.5
1,800,727	-				-0.3
1,800,729	+				-1.7
1,800,730	-				-2.3
1,800,730	-				-0.1
1,800,753	+				-0.1
1,800,811	-				+0.9
1,800,811	-				-0.3
1,800,819	+				+0.8
1,800,819	+				-2.2
1,800,819	+				-0.3
1,800,819	+				-1.0
1,800,820	-				-0.1
1,800,820	-				-0.9
1,800,820	-				-2.0
1,800,820	-				-2.9
1,800,825	+				+2.1
1,800,846	+				-2.6
1,800,846	+				-0.0
1,800,846	+				-1.6
1,800,847	-				+1.5
1,801,373	+		DDA3937_RS07945	0.20	+0.7
1,801,373	+		DDA3937_RS07945	0.20	+0.7
1,801,552	+		DDA3937_RS07945	0.26	+0.3
1,801,552	+		DDA3937_RS07945	0.26	-2.9
1,801,586	+		DDA3937_RS07945	0.27	-0.7
1,801,587	-		DDA3937_RS07945	0.27	+0.3
1,801,587	-		DDA3937_RS07945	0.27	-1.5
1,801,596	+		DDA3937_RS07945	0.28	+1.8
1,801,596	+		DDA3937_RS07945	0.28	-0.7
1,801,596	+		DDA3937_RS07945	0.28	+0.4
1,801,596	+		DDA3937_RS07945	0.28	+0.3
1,801,596	+		DDA3937_RS07945	0.28	-2.9
1,801,596	+		DDA3937_RS07945	0.28	+0.9
1,801,597	-		DDA3937_RS07945	0.28	+1.8
1,801,597	-		DDA3937_RS07945	0.28	+0.5
1,801,597	-		DDA3937_RS07945	0.28	-1.6
1,801,597	-		DDA3937_RS07945	0.28	-1.9
1,801,597	-		DDA3937_RS07945	0.28	+0.6
1,801,597	-		DDA3937_RS07945	0.28	-0.3
1,801,600	+		DDA3937_RS07945	0.28	-2.1
1,801,600	+		DDA3937_RS07945	0.28	+0.2
1,801,600	+		DDA3937_RS07945	0.28	+0.7
1,801,600	+		DDA3937_RS07945	0.28	-1.2
1,801,601	-		DDA3937_RS07945	0.28	+1.5
1,801,601	-		DDA3937_RS07945	0.28	+1.0
1,801,601	-		DDA3937_RS07945	0.28	-1.2
1,801,695	+		DDA3937_RS07945	0.31	+0.7
1,801,695	+		DDA3937_RS07945	0.31	-0.5