Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS07915 and DDA3937_RS07920 are separated by 12 nucleotides DDA3937_RS07920 and DDA3937_RS07925 are separated by 2 nucleotides DDA3937_RS07925 and DDA3937_RS07930 are separated by 13 nucleotides
DDA3937_RS07915: DDA3937_RS07915 - ABC transporter permease, at 1,793,297 to 1,794,883
_RS07915
DDA3937_RS07920: DDA3937_RS07920 - biopolymer transporter ExbD, at 1,794,896 to 1,795,297
_RS07920
DDA3937_RS07925: DDA3937_RS07925 - MotA/TolQ/ExbB proton channel family protein, at 1,795,300 to 1,795,998
_RS07925
DDA3937_RS07930: DDA3937_RS07930 - TonB family protein, at 1,796,012 to 1,796,869
_RS07930
Position (kb) 1795
1796 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1794.306 kb on + strand, within DDA3937_RS07915 at 1794.339 kb on - strand, within DDA3937_RS07915 at 1794.367 kb on + strand, within DDA3937_RS07915 at 1794.381 kb on + strand, within DDA3937_RS07915 at 1794.418 kb on + strand, within DDA3937_RS07915 at 1794.554 kb on - strand, within DDA3937_RS07915 at 1794.750 kb on + strand at 1794.750 kb on + strand at 1794.751 kb on - strand at 1794.902 kb on - strand at 1794.972 kb on + strand, within DDA3937_RS07920 at 1794.973 kb on - strand, within DDA3937_RS07920 at 1794.973 kb on - strand, within DDA3937_RS07920 at 1795.301 kb on + strand at 1795.301 kb on + strand at 1795.301 kb on + strand at 1795.301 kb on + strand at 1795.301 kb on + strand at 1795.302 kb on - strand at 1795.302 kb on - strand at 1795.302 kb on - strand at 1795.302 kb on - strand at 1795.302 kb on - strand at 1795.302 kb on - strand at 1795.302 kb on - strand at 1795.302 kb on - strand at 1795.388 kb on + strand, within DDA3937_RS07925 at 1795.388 kb on + strand, within DDA3937_RS07925 at 1795.389 kb on - strand, within DDA3937_RS07925 at 1795.389 kb on - strand, within DDA3937_RS07925 at 1795.389 kb on - strand, within DDA3937_RS07925 at 1795.389 kb on - strand, within DDA3937_RS07925 at 1795.392 kb on + strand, within DDA3937_RS07925 at 1795.392 kb on + strand, within DDA3937_RS07925 at 1795.393 kb on - strand, within DDA3937_RS07925 at 1795.393 kb on - strand, within DDA3937_RS07925 at 1795.454 kb on - strand, within DDA3937_RS07925 at 1795.735 kb on - strand, within DDA3937_RS07925 at 1795.890 kb on - strand, within DDA3937_RS07925 at 1795.890 kb on - strand, within DDA3937_RS07925 at 1795.890 kb on - strand, within DDA3937_RS07925 at 1795.983 kb on + strand at 1795.983 kb on + strand at 1795.983 kb on + strand at 1795.984 kb on - strand at 1795.984 kb on - strand at 1795.984 kb on - strand at 1795.998 kb on + strand at 1795.998 kb on + strand at 1795.998 kb on + strand at 1795.999 kb on - strand at 1795.999 kb on - strand at 1796.002 kb on - strand at 1796.558 kb on + strand, within DDA3937_RS07930 at 1796.559 kb on - strand, within DDA3937_RS07930 at 1796.559 kb on - strand, within DDA3937_RS07930 at 1796.685 kb on - strand, within DDA3937_RS07930 at 1796.776 kb on + strand, within DDA3937_RS07930 at 1796.853 kb on + strand at 1796.879 kb on - strand at 1796.961 kb on - strand at 1796.964 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 1,794,306 + DDA3937_RS07915 0.64 +0.4 1,794,339 - DDA3937_RS07915 0.66 +1.8 1,794,367 + DDA3937_RS07915 0.67 -2.3 1,794,381 + DDA3937_RS07915 0.68 +1.1 1,794,418 + DDA3937_RS07915 0.71 +0.1 1,794,554 - DDA3937_RS07915 0.79 +2.2 1,794,750 + -2.1 1,794,750 + -0.3 1,794,751 - +2.0 1,794,902 - +0.1 1,794,972 + DDA3937_RS07920 0.19 +1.6 1,794,973 - DDA3937_RS07920 0.19 +0.7 1,794,973 - DDA3937_RS07920 0.19 -1.0 1,795,301 + +0.6 1,795,301 + -0.4 1,795,301 + +0.5 1,795,301 + +2.6 1,795,301 + -1.3 1,795,302 - +0.5 1,795,302 - +1.0 1,795,302 - +2.1 1,795,302 - +1.5 1,795,302 - -1.3 1,795,302 - +0.7 1,795,302 - -0.7 1,795,302 - +1.3 1,795,388 + DDA3937_RS07925 0.13 +0.3 1,795,388 + DDA3937_RS07925 0.13 -1.9 1,795,389 - DDA3937_RS07925 0.13 -1.9 1,795,389 - DDA3937_RS07925 0.13 +1.5 1,795,389 - DDA3937_RS07925 0.13 -1.3 1,795,389 - DDA3937_RS07925 0.13 -3.2 1,795,392 + DDA3937_RS07925 0.13 +0.2 1,795,392 + DDA3937_RS07925 0.13 +2.0 1,795,393 - DDA3937_RS07925 0.13 +0.5 1,795,393 - DDA3937_RS07925 0.13 +0.9 1,795,454 - DDA3937_RS07925 0.22 +0.0 1,795,735 - DDA3937_RS07925 0.62 -1.3 1,795,890 - DDA3937_RS07925 0.84 +0.5 1,795,890 - DDA3937_RS07925 0.84 -2.7 1,795,890 - DDA3937_RS07925 0.84 -1.7 1,795,983 + -1.7 1,795,983 + -2.0 1,795,983 + +0.9 1,795,984 - +1.9 1,795,984 - +1.3 1,795,984 - +0.6 1,795,998 + -0.3 1,795,998 + -1.5 1,795,998 + +0.1 1,795,999 - -1.5 1,795,999 - +1.2 1,796,002 - +1.0 1,796,558 + DDA3937_RS07930 0.64 -3.6 1,796,559 - DDA3937_RS07930 0.64 -0.9 1,796,559 - DDA3937_RS07930 0.64 -3.0 1,796,685 - DDA3937_RS07930 0.78 -0.3 1,796,776 + DDA3937_RS07930 0.89 -1.0 1,796,853 + -2.3 1,796,879 - -2.7 1,796,961 - -2.0 1,796,964 + -1.5
Or see this region's nucleotide sequence