Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07910

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,790,234	+				+1.7
1,790,235	-				-0.3
1,790,235	-				-1.3
1,790,300	+				+0.9
1,790,301	-				-0.3
1,790,301	-				-2.4
1,790,301	-				+0.3
1,790,304	+				-2.4
1,790,305	-				-0.1
1,790,353	+				-0.3
1,790,354	-				+0.2
1,790,467	+				+1.5
1,790,517	+				+1.0
1,790,525	+				-2.7
1,790,525	+				-1.4
1,790,525	+				+0.9
1,790,525	+				+0.2
1,790,525	+				+2.5
1,790,526	-				+1.1
1,790,526	-				+1.8
1,790,526	-				-1.3
1,790,526	-				-4.9
1,790,526	-				+0.9
1,790,526	-				-4.3
1,790,526	-				+2.4
1,790,536	+				-3.3
1,790,537	-				-1.6
1,790,698	+		DDA3937_RS07905	0.33	+0.3
1,790,864	+		DDA3937_RS07905	0.65	+1.8
1,790,864	+		DDA3937_RS07905	0.65	-1.3
1,790,864	+				-1.0
1,790,865	-		DDA3937_RS07905	0.65	+0.1
1,790,865	-		DDA3937_RS07905	0.65	+0.3
1,790,933	+		DDA3937_RS07905	0.78	+1.1
1,790,933	+		DDA3937_RS07905	0.78	-3.3
1,790,933	+		DDA3937_RS07905	0.78	-2.0
1,790,933	+		DDA3937_RS07905	0.78	+1.5
1,790,933	+		DDA3937_RS07905	0.78	+0.1
1,790,933	+		DDA3937_RS07905	0.78	-1.3
1,790,934	-		DDA3937_RS07905	0.79	-1.0
1,790,934	-		DDA3937_RS07905	0.79	-1.4
1,791,188	-				+1.3
1,791,210	+				-2.4
1,791,211	-				-1.3
1,791,261	+				+0.7
1,791,332	-		DDA3937_RS07910	0.11	+0.9
1,791,332	-		DDA3937_RS07910	0.11	+2.3
1,791,378	+		DDA3937_RS07910	0.15	+3.3
1,791,396	+		DDA3937_RS07910	0.16	-0.3
1,791,396	+		DDA3937_RS07910	0.16	+0.0
1,791,782	-		DDA3937_RS07910	0.43	+3.9
1,791,782	-		DDA3937_RS07910	0.43	+0.3
1,791,804	+		DDA3937_RS07910	0.45	+2.8
1,791,804	+		DDA3937_RS07910	0.45	-3.0
1,791,804	+		DDA3937_RS07910	0.45	+2.3
1,791,805	-		DDA3937_RS07910	0.45	-2.7
1,791,805	-		DDA3937_RS07910	0.45	-2.6
1,791,805	-		DDA3937_RS07910	0.45	+3.1
1,791,854	-		DDA3937_RS07910	0.48	+0.1
1,791,862	+		DDA3937_RS07910	0.49	-0.3
1,791,862	+		DDA3937_RS07910	0.49	+1.3
1,791,862	+		DDA3937_RS07910	0.49	-2.8
1,791,863	-		DDA3937_RS07910	0.49	-1.5
1,791,863	-		DDA3937_RS07910	0.49	-1.0
1,791,863	-		DDA3937_RS07910	0.49	+0.7
1,791,863	-		DDA3937_RS07910	0.49	+1.0
1,791,863	-		DDA3937_RS07910	0.49	+0.9
1,791,863	-		DDA3937_RS07910	0.49	+1.5
1,792,080	+		DDA3937_RS07910	0.64	-1.0
1,792,081	-		DDA3937_RS07910	0.64	-0.7
1,792,191	-		DDA3937_RS07910	0.72	+0.9
1,792,212	+		DDA3937_RS07910	0.74	-2.6
1,792,212	+		DDA3937_RS07910	0.74	-0.3
1,792,212	+		DDA3937_RS07910	0.74	-0.7
1,792,212	+		DDA3937_RS07910	0.74	+1.2
1,792,212	+		DDA3937_RS07910	0.74	+0.3
1,792,212	+		DDA3937_RS07910	0.74	+1.7
1,792,212	+		DDA3937_RS07910	0.74	-1.7
1,792,213	-		DDA3937_RS07910	0.74	-1.1
1,792,288	+		DDA3937_RS07910	0.79	+1.8
1,792,383	+		DDA3937_RS07910	0.86	-2.8
1,792,383	+		DDA3937_RS07910	0.86	+1.3
1,792,386	+		DDA3937_RS07910	0.86	+0.6
1,792,386	+		DDA3937_RS07910	0.86	+2.9
1,792,397	-				+2.5
1,792,404	+		DDA3937_RS07910	0.87	+1.1
1,792,404	+		DDA3937_RS07910	0.87	+2.3
1,792,417	-		DDA3937_RS07910	0.88	-1.0
1,792,455	-				+3.6
1,792,519	+				-0.7
1,792,519	+				+0.1
1,792,563	-				-1.5
1,792,563	-				-1.7
1,792,604	+				-2.3
1,792,605	-				-2.0
1,792,605	-				-2.4
1,792,605	-				-0.9
1,792,606	+				+1.4
1,792,624	-				-0.3
1,792,624	-				-2.9
1,792,624	-				-2.4
1,792,624	-				+1.0
1,792,671	+				-0.1
1,792,671	+				+1.8
1,792,671	+				+4.3
1,792,671	+				+0.2
1,792,672	-				+0.6
1,792,672	-				-0.3
1,792,672	-				+1.8
1,792,681	-				+1.8
1,792,685	+				-2.1
1,792,685	+				-0.7
1,792,685	+				+2.8
1,792,685	+				-2.5
1,792,685	+				-0.5
1,792,685	+				-2.1
1,792,686	-				+0.2
1,792,686	-				-0.7
1,792,686	-				-0.7
1,792,686	-				-1.5
1,792,686	-				+1.2
1,792,693	+				+1.2
1,792,693	+				-2.4
1,792,693	+				-0.7
1,792,693	+				-1.5
1,792,696	-				-0.3
1,792,696	-				-1.3
1,792,696	-				-0.3
1,792,700	-				-1.8
1,792,700	-				-0.3
1,792,700	-				-2.5
1,792,733	+				-1.9
1,792,733	+				-1.3
1,792,740	+				-2.1
1,792,741	-				-1.4
1,792,745	+				-0.7
1,792,745	+				-0.1
1,792,745	+				-0.7
1,792,746	-				-2.5
1,792,746	-				-1.0
1,792,746	-				+0.1
1,792,746	-				-1.7
1,792,771	+				-1.0
1,792,771	+				-1.1
1,792,772	-				-2.3
1,792,772	-				-0.7
1,792,772	-				+0.9
1,792,780	+				-1.0
1,792,780	+				-0.3
1,792,780	+				-1.1
1,792,787	+				-2.0
1,792,787	+				+1.0
1,792,787	+				-1.0
1,792,788	-				-3.2
1,792,788	-				-0.1
1,792,788	-				+2.3
1,792,788	-				-2.3
1,792,788	-				-1.7
1,792,788	-				-2.6
1,792,928	+				-0.8
1,792,929	-				+0.7
1,792,929	-				-0.8
1,792,973	+				+1.3
1,793,022	+				+0.3
1,793,022	+				+2.0
1,793,031	+				+0.3
1,793,100	+				-0.5
1,793,115	+				+0.2
1,793,115	+				+2.2
1,793,116	-				-2.0
1,793,116	-				-1.3
1,793,147	+				-1.5
1,793,148	-				+0.9
1,793,148	-				-2.9
1,793,148	-				-2.0
1,793,259	+				+0.3
1,793,259	+				-0.6
1,793,259	+				-3.3
1,793,259	+				+1.0
1,793,260	-				+1.6
1,793,260	-				-0.2
1,793,260	-				+0.3
1,793,260	-				-2.6
1,793,260	-				+2.5
1,793,260	-				+0.0
1,793,261	+				-0.1
1,793,261	+				-2.1
1,793,261	+				+0.6
1,793,261	+				-1.3
1,793,261	+				-0.7
1,793,261	+				-1.1
1,793,262	-				+0.3
1,793,262	-				-2.4
1,793,354	+				-0.3
1,793,372	+				+0.8
1,793,444	-				-1.5
1,793,467	-		DDA3937_RS07915	0.11	+1.1
1,793,467	-		DDA3937_RS07915	0.11	-1.3