Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07885

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,784,827	-		DDA3937_RS07880	0.35	-2.7
1,785,090	+		DDA3937_RS07880	0.56	-0.3
1,785,090	+		DDA3937_RS07880	0.56	-2.6
1,785,090	+		DDA3937_RS07880	0.56	-0.1
1,785,090	+		DDA3937_RS07880	0.56	-1.2
1,785,090	+		DDA3937_RS07880	0.56	+0.1
1,785,090	+		DDA3937_RS07880	0.56	-2.6
1,785,090	+		DDA3937_RS07880	0.56	-0.1
1,785,091	-		DDA3937_RS07880	0.56	+2.3
1,785,091	-		DDA3937_RS07880	0.56	-1.4
1,785,091	-		DDA3937_RS07880	0.56	-1.4
1,785,091	-		DDA3937_RS07880	0.56	-1.9
1,785,091	-		DDA3937_RS07880	0.56	-2.4
1,785,114	+		DDA3937_RS07880	0.57	+0.7
1,785,115	-		DDA3937_RS07880	0.57	-1.0
1,785,115	-		DDA3937_RS07880	0.57	-0.1
1,785,115	-		DDA3937_RS07880	0.57	+2.1
1,785,257	+		DDA3937_RS07880	0.69	-1.3
1,785,283	+		DDA3937_RS07880	0.71	-0.7
1,785,414	+		DDA3937_RS07880	0.81	+1.3
1,785,414	+		DDA3937_RS07880	0.81	-2.9
1,785,414	+		DDA3937_RS07880	0.81	-3.5
1,785,415	-		DDA3937_RS07880	0.81	+1.5
1,785,415	-		DDA3937_RS07880	0.81	-0.5
1,785,415	-		DDA3937_RS07880	0.81	-0.2
1,785,415	-		DDA3937_RS07880	0.81	-0.0
1,785,415	-		DDA3937_RS07880	0.81	+0.1
1,785,426	-		DDA3937_RS07880	0.82	-1.5
1,785,426	-		DDA3937_RS07880	0.82	+0.7
1,785,457	-		DDA3937_RS07880	0.84	+0.3
1,785,457	-		DDA3937_RS07880	0.84	+0.8
1,785,457	-		DDA3937_RS07880	0.84	+0.0
1,785,457	-		DDA3937_RS07880	0.84	-2.3
1,785,457	-		DDA3937_RS07880	0.84	-2.1
1,785,525	+		DDA3937_RS07880	0.89	-1.4
1,785,525	+		DDA3937_RS07880	0.89	+1.4
1,785,526	-		DDA3937_RS07880	0.90	-2.6
1,785,552	+				-0.0
1,785,552	+				+0.8
1,785,552	+				-1.3
1,785,553	-				+0.7
1,785,553	-				+0.3
1,785,553	-				+0.8
1,785,553	-				-0.9
1,785,553	-				-0.5
1,785,553	-				-0.7
1,785,553	-				+0.2
1,785,553	-				-1.0
1,785,603	-				+1.4
1,785,603	-				+2.0
1,785,637	+				-0.5
1,785,638	-				-0.1
1,785,638	-				-0.1
1,785,640	-				-1.0
1,785,647	+				-3.3
1,785,647	+				+2.3
1,785,676	+				+1.9
1,785,677	-				+0.6
1,785,779	+				+1.3
1,785,780	-				-2.7
1,785,785	+				-2.1
1,785,786	-				+0.8
1,785,792	+				+0.1
1,785,792	+				-0.5
1,785,798	+				+2.0
1,785,804	+				-0.7
1,785,811	+				-3.5
1,785,812	-				-1.3
1,785,817	+				-1.7
1,785,818	-				-0.0
1,785,818	-				-0.3
1,785,833	-				-0.1
1,785,862	-				-0.5
1,785,867	+				-0.3
1,785,868	-				+1.3
1,785,876	+				+1.0
1,785,876	+				-0.3
1,785,876	+				+0.5
1,785,876	+				-2.1
1,785,876	+				+4.1
1,785,877	-				-0.1
1,785,877	-				-1.9
1,785,877	-				+0.3
1,785,877	-				-1.5
1,785,882	+				-1.8
1,786,047	+		DDA3937_RS07885	0.30	+0.5
1,786,047	+		DDA3937_RS07885	0.30	-2.4
1,786,048	-		DDA3937_RS07885	0.30	-1.3
1,786,048	-		DDA3937_RS07885	0.30	-1.3
1,786,054	+		DDA3937_RS07885	0.31	-2.4
1,786,064	+		DDA3937_RS07885	0.32	-0.4
1,786,065	-		DDA3937_RS07885	0.32	-2.0
1,786,118	+		DDA3937_RS07885	0.39	+3.1
1,786,119	-		DDA3937_RS07885	0.39	+1.6
1,786,119	-		DDA3937_RS07885	0.39	+0.1
1,786,119	-		DDA3937_RS07885	0.39	-0.2
1,786,119	-		DDA3937_RS07885	0.39	-1.9
1,786,128	+		DDA3937_RS07885	0.40	+1.3
1,786,128	+		DDA3937_RS07885	0.40	-1.9
1,786,129	-		DDA3937_RS07885	0.40	+0.5
1,786,129	-		DDA3937_RS07885	0.40	-0.3
1,786,129	-		DDA3937_RS07885	0.40	-0.8
1,786,143	+		DDA3937_RS07885	0.42	-1.1
1,786,144	-		DDA3937_RS07885	0.42	-2.5
1,786,225	+		DDA3937_RS07885	0.52	-0.7
1,786,226	-		DDA3937_RS07885	0.52	-2.0
1,786,242	+		DDA3937_RS07885	0.54	-2.9
1,786,276	+		DDA3937_RS07885	0.59	-1.4
1,786,276	+		DDA3937_RS07885	0.59	-1.8
1,786,277	-		DDA3937_RS07885	0.59	-3.4
1,786,320	+		DDA3937_RS07885	0.64	+0.5
1,786,320	+		DDA3937_RS07885	0.64	-0.3
1,786,321	-		DDA3937_RS07885	0.64	-4.6
1,786,353	+		DDA3937_RS07885	0.68	-1.0
1,786,354	-		DDA3937_RS07885	0.68	-1.1
1,786,357	-		DDA3937_RS07885	0.69	-0.1
1,786,360	+		DDA3937_RS07885	0.69	+0.6
1,786,360	+		DDA3937_RS07885	0.69	-3.1
1,786,360	+		DDA3937_RS07885	0.69	+0.2
1,786,360	+		DDA3937_RS07885	0.69	-3.1
1,786,360	+		DDA3937_RS07885	0.69	-0.7
1,786,360	+		DDA3937_RS07885	0.69	-1.0
1,786,360	-		DDA3937_RS07885	0.69	-0.7
1,786,361	-		DDA3937_RS07885	0.69	-0.1
1,786,361	-		DDA3937_RS07885	0.69	-1.5
1,786,361	-		DDA3937_RS07885	0.69	-1.3
1,786,365	-		DDA3937_RS07885	0.70	-0.5
1,786,365	-		DDA3937_RS07885	0.70	+1.0
1,786,470	+		DDA3937_RS07885	0.83	-0.2
1,786,470	+		DDA3937_RS07885	0.83	-1.2
1,786,471	-		DDA3937_RS07885	0.83	+1.9
1,786,521	-		DDA3937_RS07885	0.89	-2.2
1,786,521	-		DDA3937_RS07885	0.89	-0.7
1,786,539	+				+0.5
1,786,540	-				-1.0
1,786,576	-				-2.6
1,786,592	-				-2.1
1,786,609	+				-0.7
1,786,609	+				+1.5
1,786,609	+				-2.4
1,786,609	+				-0.5
1,786,609	+				-1.3
1,786,609	+				+1.5
1,786,609	+				-1.6
1,786,609	+				+0.4
1,786,609	+				-2.4
1,786,609	+				-2.1
1,786,610	-				+1.3
1,786,610	-				-0.3
1,786,610	-				+0.6
1,786,610	-				+0.8
1,786,610	-				+0.8
1,786,610	-				-1.9
1,786,610	-				+2.8
1,786,610	-				-0.3
1,786,610	-				-1.3
1,786,610	-				-2.9
1,786,610	-				+1.9
1,786,610	-				+1.1
1,786,613	+				+0.3
1,786,613	+				-2.6
1,786,613	+				-1.7
1,786,614	-				+1.3
1,786,614	-				+0.2
1,786,614	-				-1.3
1,786,630	+				+2.3
1,786,630	+				+1.0
1,786,714	-				+0.6
1,786,731	+		DDA3937_RS23415	0.19	+1.5
1,786,830	+				+0.8
1,787,102	+				-0.6
1,787,103	-				-1.5
1,787,103	-				+2.6
1,787,134	+				+2.0
1,787,134	+				-0.3
1,787,134	+				-0.8
1,787,134	+				-1.0
1,787,135	-				+0.3
1,787,135	-				-0.5
1,787,135	-				-2.0
1,787,215	+				-3.0
1,787,215	+				-2.0
1,787,216	-				-0.7
1,787,216	-				-2.3
1,787,343	+		DDA3937_RS07890	0.17	-3.5
1,787,343	+		DDA3937_RS07890	0.17	+0.5
1,787,344	-		DDA3937_RS07890	0.17	-0.8
1,787,344	-		DDA3937_RS07890	0.17	+1.4
1,787,347	+		DDA3937_RS07890	0.17	+1.3
1,787,347	+		DDA3937_RS07890	0.17	+0.7
1,787,347	+		DDA3937_RS07890	0.17	-2.5
1,787,347	+				-1.3
1,787,348	-		DDA3937_RS07890	0.17	-1.5
1,787,348	-		DDA3937_RS07890	0.17	+0.5
1,787,348	-		DDA3937_RS07890	0.17	-0.7
1,787,348	-		DDA3937_RS07890	0.17	-2.3
1,787,422	+		DDA3937_RS07890	0.23	-2.7
1,787,423	-		DDA3937_RS07890	0.23	-1.9
1,787,423	-				+3.1
1,787,460	+		DDA3937_RS07890	0.26	-3.3
1,787,485	+		DDA3937_RS07890	0.28	-1.1
1,787,544	+		DDA3937_RS07890	0.32	+1.5
1,787,544	+		DDA3937_RS07890	0.32	-0.7