Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07720

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS07715 and DDA3937_RS07720 are separated by 106 nucleotidesDDA3937_RS07720 and DDA3937_RS07725 overlap by 8 nucleotides DDA3937_RS07715: DDA3937_RS07715 - TonB-dependent receptor, at 1,740,194 to 1,742,308 _RS07715 DDA3937_RS07720: DDA3937_RS07720 - IucA/IucC family siderophore biosynthesis protein, at 1,742,415 to 1,744,277 _RS07720 DDA3937_RS07725: DDA3937_RS07725 - type III PLP-dependent enzyme, at 1,744,270 to 1,745,505 _RS07725 Position (kb) 1742 1743 1744 1745Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1741.455 kb on - strand, within DDA3937_RS07715at 1741.509 kb on + strand, within DDA3937_RS07715at 1741.510 kb on - strand, within DDA3937_RS07715at 1741.519 kb on + strand, within DDA3937_RS07715at 1741.519 kb on + strand, within DDA3937_RS07715at 1741.519 kb on + strand, within DDA3937_RS07715at 1741.520 kb on - strand, within DDA3937_RS07715at 1741.520 kb on - strand, within DDA3937_RS07715at 1741.522 kb on + strand, within DDA3937_RS07715at 1741.523 kb on - strand, within DDA3937_RS07715at 1741.628 kb on + strand, within DDA3937_RS07715at 1741.629 kb on - strand, within DDA3937_RS07715at 1741.656 kb on + strand, within DDA3937_RS07715at 1741.656 kb on + strand, within DDA3937_RS07715at 1741.656 kb on + strand, within DDA3937_RS07715at 1741.657 kb on - strand, within DDA3937_RS07715at 1741.657 kb on - strand, within DDA3937_RS07715at 1741.678 kb on + strand, within DDA3937_RS07715at 1741.890 kb on + strand, within DDA3937_RS07715at 1741.890 kb on + strand, within DDA3937_RS07715at 1741.891 kb on - strand, within DDA3937_RS07715at 1741.896 kb on - strand, within DDA3937_RS07715at 1741.984 kb on + strand, within DDA3937_RS07715at 1741.984 kb on + strand, within DDA3937_RS07715at 1741.985 kb on - strand, within DDA3937_RS07715at 1742.002 kb on + strand, within DDA3937_RS07715at 1742.065 kb on + strand, within DDA3937_RS07715at 1742.096 kb on - strand, within DDA3937_RS07715at 1742.211 kb on - strandat 1742.223 kb on - strandat 1742.223 kb on - strandat 1742.312 kb on + strandat 1742.313 kb on - strandat 1742.336 kb on + strandat 1742.344 kb on + strandat 1742.346 kb on + strandat 1742.357 kb on + strandat 1742.362 kb on - strandat 1742.404 kb on - strandat 1742.492 kb on + strandat 1742.520 kb on + strandat 1742.572 kb on - strandat 1742.679 kb on + strand, within DDA3937_RS07720at 1742.679 kb on + strand, within DDA3937_RS07720at 1742.680 kb on - strand, within DDA3937_RS07720at 1742.680 kb on - strand, within DDA3937_RS07720at 1742.694 kb on + strand, within DDA3937_RS07720at 1742.800 kb on + strand, within DDA3937_RS07720at 1742.800 kb on + strand, within DDA3937_RS07720at 1742.801 kb on - strand, within DDA3937_RS07720at 1742.801 kb on - strand, within DDA3937_RS07720at 1742.802 kb on + strand, within DDA3937_RS07720at 1742.802 kb on + strand, within DDA3937_RS07720at 1742.803 kb on - strand, within DDA3937_RS07720at 1742.803 kb on - strand, within DDA3937_RS07720at 1742.889 kb on + strand, within DDA3937_RS07720at 1742.889 kb on + strand, within DDA3937_RS07720at 1742.890 kb on - strand, within DDA3937_RS07720at 1742.890 kb on - strand, within DDA3937_RS07720at 1743.029 kb on - strand, within DDA3937_RS07720at 1743.134 kb on + strand, within DDA3937_RS07720at 1743.134 kb on + strand, within DDA3937_RS07720at 1743.134 kb on + strand, within DDA3937_RS07720at 1743.134 kb on + strand, within DDA3937_RS07720at 1743.134 kb on + strand, within DDA3937_RS07720at 1743.135 kb on - strand, within DDA3937_RS07720at 1743.135 kb on - strand, within DDA3937_RS07720at 1743.135 kb on - strand, within DDA3937_RS07720at 1743.161 kb on + strand, within DDA3937_RS07720at 1743.198 kb on - strand, within DDA3937_RS07720at 1743.251 kb on + strand, within DDA3937_RS07720at 1743.252 kb on - strand, within DDA3937_RS07720at 1743.252 kb on - strand, within DDA3937_RS07720at 1743.257 kb on + strand, within DDA3937_RS07720at 1743.257 kb on + strand, within DDA3937_RS07720at 1743.257 kb on + strand, within DDA3937_RS07720at 1743.282 kb on + strand, within DDA3937_RS07720at 1743.282 kb on + strand, within DDA3937_RS07720at 1743.282 kb on + strand, within DDA3937_RS07720at 1743.282 kb on + strand, within DDA3937_RS07720at 1743.283 kb on - strand, within DDA3937_RS07720at 1743.342 kb on + strand, within DDA3937_RS07720at 1743.342 kb on + strand, within DDA3937_RS07720at 1743.631 kb on - strand, within DDA3937_RS07720at 1743.631 kb on - strand, within DDA3937_RS07720at 1743.678 kb on + strand, within DDA3937_RS07720at 1743.691 kb on + strand, within DDA3937_RS07720at 1743.817 kb on + strand, within DDA3937_RS07720at 1743.846 kb on + strand, within DDA3937_RS07720at 1743.846 kb on + strand, within DDA3937_RS07720at 1743.847 kb on - strand, within DDA3937_RS07720at 1743.847 kb on - strand, within DDA3937_RS07720at 1743.848 kb on + strand, within DDA3937_RS07720at 1743.862 kb on + strand, within DDA3937_RS07720at 1743.862 kb on + strand, within DDA3937_RS07720at 1743.862 kb on + strand, within DDA3937_RS07720at 1743.862 kb on + strand, within DDA3937_RS07720at 1743.862 kb on + strand, within DDA3937_RS07720at 1743.862 kb on + strand, within DDA3937_RS07720at 1743.862 kb on + strand, within DDA3937_RS07720at 1743.862 kb on + strand, within DDA3937_RS07720at 1743.862 kb on + strandat 1743.862 kb on + strand, within DDA3937_RS07720at 1743.863 kb on - strand, within DDA3937_RS07720at 1743.863 kb on - strand, within DDA3937_RS07720at 1743.863 kb on - strand, within DDA3937_RS07720at 1743.863 kb on - strand, within DDA3937_RS07720at 1743.863 kb on - strand, within DDA3937_RS07720at 1743.863 kb on - strand, within DDA3937_RS07720at 1743.863 kb on - strand, within DDA3937_RS07720at 1743.863 kb on - strand, within DDA3937_RS07720at 1743.863 kb on - strand, within DDA3937_RS07720at 1743.891 kb on + strand, within DDA3937_RS07720at 1743.891 kb on + strand, within DDA3937_RS07720at 1743.892 kb on - strand, within DDA3937_RS07720at 1743.924 kb on + strand, within DDA3937_RS07720at 1743.924 kb on + strand, within DDA3937_RS07720at 1743.924 kb on + strand, within DDA3937_RS07720at 1743.924 kb on + strand, within DDA3937_RS07720at 1743.924 kb on + strand, within DDA3937_RS07720at 1743.924 kb on + strand, within DDA3937_RS07720at 1743.925 kb on - strand, within DDA3937_RS07720at 1743.925 kb on - strand, within DDA3937_RS07720at 1743.925 kb on - strand, within DDA3937_RS07720at 1743.925 kb on - strand, within DDA3937_RS07720at 1744.112 kb on + strandat 1744.113 kb on - strandat 1744.152 kb on + strandat 1744.152 kb on + strandat 1744.152 kb on + strandat 1744.153 kb on - strandat 1744.153 kb on - strandat 1744.153 kb on - strandat 1744.275 kb on + strandat 1744.327 kb on - strandat 1744.351 kb on + strandat 1744.420 kb on + strand, within DDA3937_RS07725at 1744.420 kb on + strand, within DDA3937_RS07725at 1744.421 kb on - strand, within DDA3937_RS07725at 1744.421 kb on - strand, within DDA3937_RS07725at 1744.424 kb on - strand, within DDA3937_RS07725at 1744.424 kb on - strand, within DDA3937_RS07725at 1744.478 kb on + strand, within DDA3937_RS07725at 1744.478 kb on + strand, within DDA3937_RS07725at 1744.479 kb on - strand, within DDA3937_RS07725at 1744.479 kb on - strand, within DDA3937_RS07725at 1744.539 kb on + strand, within DDA3937_RS07725at 1744.539 kb on + strand, within DDA3937_RS07725at 1744.731 kb on + strand, within DDA3937_RS07725at 1744.844 kb on + strand, within DDA3937_RS07725at 1744.845 kb on - strand, within DDA3937_RS07725at 1744.900 kb on + strand, within DDA3937_RS07725at 1744.950 kb on + strand, within DDA3937_RS07725at 1744.950 kb on + strand, within DDA3937_RS07725at 1744.951 kb on - strand, within DDA3937_RS07725at 1744.967 kb on + strand, within DDA3937_RS07725at 1744.990 kb on + strand, within DDA3937_RS07725at 1744.991 kb on - strand, within DDA3937_RS07725at 1745.107 kb on + strand, within DDA3937_RS07725at 1745.108 kb on - strand, within DDA3937_RS07725at 1745.116 kb on + strand, within DDA3937_RS07725at 1745.117 kb on - strand, within DDA3937_RS07725at 1745.119 kb on + strand, within DDA3937_RS07725at 1745.119 kb on + strand, within DDA3937_RS07725at 1745.119 kb on + strand, within DDA3937_RS07725at 1745.120 kb on - strand, within DDA3937_RS07725at 1745.120 kb on - strand, within DDA3937_RS07725at 1745.120 kb on - strand, within DDA3937_RS07725at 1745.120 kb on - strand, within DDA3937_RS07725

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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1,741,455 - DDA3937_RS07715 0.60 +2.3
1,741,509 + DDA3937_RS07715 0.62 +2.9
1,741,510 - DDA3937_RS07715 0.62 +3.1
1,741,519 + DDA3937_RS07715 0.63 +2.4
1,741,519 + DDA3937_RS07715 0.63 +1.6
1,741,519 + DDA3937_RS07715 0.63 +2.3
1,741,520 - DDA3937_RS07715 0.63 +0.3
1,741,520 - DDA3937_RS07715 0.63 +1.3
1,741,522 + DDA3937_RS07715 0.63 +3.2
1,741,523 - DDA3937_RS07715 0.63 -1.0
1,741,628 + DDA3937_RS07715 0.68 +2.3
1,741,629 - DDA3937_RS07715 0.68 +0.1
1,741,656 + DDA3937_RS07715 0.69 +3.0
1,741,656 + DDA3937_RS07715 0.69 +1.7
1,741,656 + DDA3937_RS07715 0.69 +1.5
1,741,657 - DDA3937_RS07715 0.69 -1.5
1,741,657 - DDA3937_RS07715 0.69 +2.4
1,741,678 + DDA3937_RS07715 0.70 +2.8
1,741,890 + DDA3937_RS07715 0.80 +2.8
1,741,890 + DDA3937_RS07715 0.80 +4.3
1,741,891 - DDA3937_RS07715 0.80 +1.6
1,741,896 - DDA3937_RS07715 0.80 -1.4
1,741,984 + DDA3937_RS07715 0.85 +2.3
1,741,984 + DDA3937_RS07715 0.85 +3.4
1,741,985 - DDA3937_RS07715 0.85 +1.3
1,742,002 + DDA3937_RS07715 0.85 +2.8
1,742,065 + DDA3937_RS07715 0.88 +2.1
1,742,096 - DDA3937_RS07715 0.90 +1.7
1,742,211 - -1.5
1,742,223 - +1.5
1,742,223 - +0.6
1,742,312 + +0.5
1,742,313 - +2.4
1,742,336 + -1.9
1,742,344 + +0.6
1,742,346 + -2.4
1,742,357 + -0.9
1,742,362 - +1.0
1,742,404 - +1.6
1,742,492 + +1.1
1,742,520 + -1.9
1,742,572 - -1.0
1,742,679 + DDA3937_RS07720 0.14 -1.0
1,742,679 + DDA3937_RS07720 0.14 +0.3
1,742,680 - DDA3937_RS07720 0.14 -0.6
1,742,680 - DDA3937_RS07720 0.14 +1.9
1,742,694 + DDA3937_RS07720 0.15 -0.6
1,742,800 + DDA3937_RS07720 0.21 -0.3
1,742,800 + DDA3937_RS07720 0.21 -0.1
1,742,801 - DDA3937_RS07720 0.21 +3.7
1,742,801 - DDA3937_RS07720 0.21 +2.0
1,742,802 + DDA3937_RS07720 0.21 +0.3
1,742,802 + DDA3937_RS07720 0.21 +1.2
1,742,803 - DDA3937_RS07720 0.21 -0.3
1,742,803 - DDA3937_RS07720 0.21 +2.5
1,742,889 + DDA3937_RS07720 0.25 -2.4
1,742,889 + DDA3937_RS07720 0.25 -1.7
1,742,890 - DDA3937_RS07720 0.25 -2.2
1,742,890 - DDA3937_RS07720 0.25 +2.5
1,743,029 - DDA3937_RS07720 0.33 -2.6
1,743,134 + DDA3937_RS07720 0.39 -2.4
1,743,134 + DDA3937_RS07720 0.39 +1.3
1,743,134 + DDA3937_RS07720 0.39 +0.4
1,743,134 + DDA3937_RS07720 0.39 -3.1
1,743,134 + DDA3937_RS07720 0.39 +0.6
1,743,135 - DDA3937_RS07720 0.39 +0.8
1,743,135 - DDA3937_RS07720 0.39 -2.6
1,743,135 - DDA3937_RS07720 0.39 +1.5
1,743,161 + DDA3937_RS07720 0.40 +1.7
1,743,198 - DDA3937_RS07720 0.42 +3.1
1,743,251 + DDA3937_RS07720 0.45 +3.5
1,743,252 - DDA3937_RS07720 0.45 +1.5
1,743,252 - DDA3937_RS07720 0.45 +1.4
1,743,257 + DDA3937_RS07720 0.45 +2.1
1,743,257 + DDA3937_RS07720 0.45 -1.1
1,743,257 + DDA3937_RS07720 0.45 +0.5
1,743,282 + DDA3937_RS07720 0.47 -0.4
1,743,282 + DDA3937_RS07720 0.47 -2.2
1,743,282 + DDA3937_RS07720 0.47 -0.0
1,743,282 + DDA3937_RS07720 0.47 -1.7
1,743,283 - DDA3937_RS07720 0.47 +2.4
1,743,342 + DDA3937_RS07720 0.50 +1.8
1,743,342 + DDA3937_RS07720 0.50 -0.3
1,743,631 - DDA3937_RS07720 0.65 -0.3
1,743,631 - DDA3937_RS07720 0.65 -0.1
1,743,678 + DDA3937_RS07720 0.68 +1.6
1,743,691 + DDA3937_RS07720 0.68 +0.0
1,743,817 + DDA3937_RS07720 0.75 -0.6
1,743,846 + DDA3937_RS07720 0.77 -0.7
1,743,846 + DDA3937_RS07720 0.77 -1.5
1,743,847 - DDA3937_RS07720 0.77 -0.5
1,743,847 - DDA3937_RS07720 0.77 +0.2
1,743,848 + DDA3937_RS07720 0.77 -1.3
1,743,862 + DDA3937_RS07720 0.78 -2.2
1,743,862 + DDA3937_RS07720 0.78 +0.7
1,743,862 + DDA3937_RS07720 0.78 -1.7
1,743,862 + DDA3937_RS07720 0.78 -2.6
1,743,862 + DDA3937_RS07720 0.78 +0.4
1,743,862 + DDA3937_RS07720 0.78 -0.7
1,743,862 + DDA3937_RS07720 0.78 +0.5
1,743,862 + DDA3937_RS07720 0.78 -0.0
1,743,862 + -0.3
1,743,862 + DDA3937_RS07720 0.78 +1.7
1,743,863 - DDA3937_RS07720 0.78 -1.3
1,743,863 - DDA3937_RS07720 0.78 -1.0
1,743,863 - DDA3937_RS07720 0.78 +0.3
1,743,863 - DDA3937_RS07720 0.78 -1.7
1,743,863 - DDA3937_RS07720 0.78 -0.6
1,743,863 - DDA3937_RS07720 0.78 +1.4
1,743,863 - DDA3937_RS07720 0.78 -1.9
1,743,863 - DDA3937_RS07720 0.78 +2.9
1,743,863 - DDA3937_RS07720 0.78 +0.5
1,743,891 + DDA3937_RS07720 0.79 +2.9
1,743,891 + DDA3937_RS07720 0.79 +2.6
1,743,892 - DDA3937_RS07720 0.79 -0.5
1,743,924 + DDA3937_RS07720 0.81 +0.6
1,743,924 + DDA3937_RS07720 0.81 -1.9
1,743,924 + DDA3937_RS07720 0.81 -1.1
1,743,924 + DDA3937_RS07720 0.81 +0.3
1,743,924 + DDA3937_RS07720 0.81 -0.8
1,743,924 + DDA3937_RS07720 0.81 +2.4
1,743,925 - DDA3937_RS07720 0.81 +1.1
1,743,925 - DDA3937_RS07720 0.81 +1.1
1,743,925 - DDA3937_RS07720 0.81 +0.6
1,743,925 - DDA3937_RS07720 0.81 -3.5
1,744,112 + +0.7
1,744,113 - -0.7
1,744,152 + +0.8
1,744,152 + -1.4
1,744,152 + -2.4
1,744,153 - -2.3
1,744,153 - +1.6
1,744,153 - -0.1
1,744,275 + +0.6
1,744,327 - +0.8
1,744,351 + -1.0
1,744,420 + DDA3937_RS07725 0.12 -2.6
1,744,420 + DDA3937_RS07725 0.12 -1.7
1,744,421 - DDA3937_RS07725 0.12 -0.9
1,744,421 - DDA3937_RS07725 0.12 +1.5
1,744,424 - DDA3937_RS07725 0.12 +1.9
1,744,424 - DDA3937_RS07725 0.12 -1.9
1,744,478 + DDA3937_RS07725 0.17 +2.8
1,744,478 + DDA3937_RS07725 0.17 -2.0
1,744,479 - DDA3937_RS07725 0.17 -0.3
1,744,479 - DDA3937_RS07725 0.17 +2.5
1,744,539 + DDA3937_RS07725 0.22 -2.1
1,744,539 + DDA3937_RS07725 0.22 -0.6
1,744,731 + DDA3937_RS07725 0.37 +1.1
1,744,844 + DDA3937_RS07725 0.46 -1.3
1,744,845 - DDA3937_RS07725 0.47 +1.1
1,744,900 + DDA3937_RS07725 0.51 +0.1
1,744,950 + DDA3937_RS07725 0.55 +0.6
1,744,950 + DDA3937_RS07725 0.55 -0.9
1,744,951 - DDA3937_RS07725 0.55 -2.8
1,744,967 + DDA3937_RS07725 0.56 -0.9
1,744,990 + DDA3937_RS07725 0.58 -0.2
1,744,991 - DDA3937_RS07725 0.58 -0.7
1,745,107 + DDA3937_RS07725 0.68 -1.0
1,745,108 - DDA3937_RS07725 0.68 +0.1
1,745,116 + DDA3937_RS07725 0.68 -1.0
1,745,117 - DDA3937_RS07725 0.69 +1.4
1,745,119 + DDA3937_RS07725 0.69 -0.8
1,745,119 + DDA3937_RS07725 0.69 -1.0
1,745,119 + DDA3937_RS07725 0.69 -3.1
1,745,120 - DDA3937_RS07725 0.69 -0.7
1,745,120 - DDA3937_RS07725 0.69 -1.3
1,745,120 - DDA3937_RS07725 0.69 +0.9
1,745,120 - DDA3937_RS07725 0.69 -2.3

Or see this region's nucleotide sequence