Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07715

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,739,198	+		DDA3937_RS07710	0.40	+0.6
1,739,247	+		DDA3937_RS07710	0.44	-2.9
1,739,264	+		DDA3937_RS07710	0.45	+2.2
1,739,265	-		DDA3937_RS07710	0.45	+0.3
1,739,265	-		DDA3937_RS07710	0.45	-1.7
1,739,278	+		DDA3937_RS07710	0.46	-1.3
1,739,278	+		DDA3937_RS07710	0.46	-3.1
1,739,299	+		DDA3937_RS07710	0.48	+0.4
1,739,544	+		DDA3937_RS07710	0.65	-1.9
1,739,596	+		DDA3937_RS07710	0.69	-2.2
1,739,596	+		DDA3937_RS07710	0.69	-0.3
1,739,649	+		DDA3937_RS07710	0.73	+0.6
1,739,714	-		DDA3937_RS07710	0.78	+3.1
1,739,938	+				-2.9
1,739,938	+				-1.3
1,739,938	+				+0.1
1,739,939	-				+2.8
1,740,032	+				+2.6
1,740,036	+				-0.1
1,740,037	-				-2.6
1,740,038	+				-3.8
1,740,038	+				+1.3
1,740,067	+				-0.7
1,740,104	+				-1.0
1,740,122	+				-1.5
1,740,123	-				+1.5
1,740,126	-				-0.4
1,740,126	-				-1.7
1,740,128	+				-2.2
1,740,137	-				+1.6
1,740,212	+				-0.6
1,740,212	+				+2.1
1,740,259	+				+1.2
1,740,349	+				+2.9
1,740,382	+				+2.1
1,740,403	-				-1.3
1,740,403	-				-0.4
1,740,405	+				+1.9
1,740,414	+		DDA3937_RS07715	0.10	+1.0
1,740,414	+				-0.7
1,740,415	-		DDA3937_RS07715	0.10	+2.9
1,740,547	+		DDA3937_RS07715	0.17	+0.6
1,740,547	+		DDA3937_RS07715	0.17	+3.4
1,740,547	+		DDA3937_RS07715	0.17	+4.2
1,740,548	-		DDA3937_RS07715	0.17	-1.9
1,740,548	-		DDA3937_RS07715	0.17	+2.5
1,740,637	+		DDA3937_RS07715	0.21	+2.3
1,740,637	+		DDA3937_RS07715	0.21	+2.2
1,740,637	+		DDA3937_RS07715	0.21	+2.4
1,740,638	-		DDA3937_RS07715	0.21	-1.0
1,740,638	-				+3.9
1,740,638	-				+0.9
1,740,638	-		DDA3937_RS07715	0.21	-0.7
1,740,640	+		DDA3937_RS07715	0.21	+3.1
1,740,640	+		DDA3937_RS07715	0.21	+2.1
1,740,640	+		DDA3937_RS07715	0.21	-0.1
1,740,641	-		DDA3937_RS07715	0.21	-2.2
1,740,731	+		DDA3937_RS07715	0.25	+0.8
1,740,731	+		DDA3937_RS07715	0.25	+2.4
1,740,744	-		DDA3937_RS07715	0.26	+3.8
1,740,744	-		DDA3937_RS07715	0.26	+1.5
1,740,768	-		DDA3937_RS07715	0.27	+0.6
1,740,794	+		DDA3937_RS07715	0.28	+2.2
1,740,794	+		DDA3937_RS07715	0.28	-1.0
1,740,795	-		DDA3937_RS07715	0.28	-1.7
1,740,810	+		DDA3937_RS07715	0.29	+2.3
1,740,847	+		DDA3937_RS07715	0.31	+1.8
1,740,974	+		DDA3937_RS07715	0.37	+2.6
1,740,978	+		DDA3937_RS07715	0.37	+3.9
1,740,979	-		DDA3937_RS07715	0.37	-0.0
1,740,998	-		DDA3937_RS07715	0.38	-0.7
1,740,998	-		DDA3937_RS07715	0.38	+1.3
1,741,083	-		DDA3937_RS07715	0.42	+3.8
1,741,087	+		DDA3937_RS07715	0.42	-0.7
1,741,088	-		DDA3937_RS07715	0.42	+2.4
1,741,092	-		DDA3937_RS07715	0.42	+2.5
1,741,092	-		DDA3937_RS07715	0.42	+4.1
1,741,127	+		DDA3937_RS07715	0.44	+1.9
1,741,127	+		DDA3937_RS07715	0.44	+3.0
1,741,127	+		DDA3937_RS07715	0.44	+4.1
1,741,128	-		DDA3937_RS07715	0.44	+1.0
1,741,128	-		DDA3937_RS07715	0.44	+2.4
1,741,139	+		DDA3937_RS07715	0.45	+3.0
1,741,139	+		DDA3937_RS07715	0.45	+1.9
1,741,139	+		DDA3937_RS07715	0.45	+2.1
1,741,140	-		DDA3937_RS07715	0.45	+1.4
1,741,140	-		DDA3937_RS07715	0.45	+1.4
1,741,140	-		DDA3937_RS07715	0.45	-0.7
1,741,209	+		DDA3937_RS07715	0.48	+3.8
1,741,209	+		DDA3937_RS07715	0.48	+2.4
1,741,210	-		DDA3937_RS07715	0.48	+2.8
1,741,212	-		DDA3937_RS07715	0.48	+2.3
1,741,274	-		DDA3937_RS07715	0.51	+1.3
1,741,286	+		DDA3937_RS07715	0.52	+3.1
1,741,361	+		DDA3937_RS07715	0.55	+3.1
1,741,361	+		DDA3937_RS07715	0.55	+4.6
1,741,361	+		DDA3937_RS07715	0.55	-1.0
1,741,361	+		DDA3937_RS07715	0.55	+3.0
1,741,362	-		DDA3937_RS07715	0.55	+2.3
1,741,362	-		DDA3937_RS07715	0.55	+1.1
1,741,399	+		DDA3937_RS07715	0.57	+4.3
1,741,399	+		DDA3937_RS07715	0.57	+2.6
1,741,455	-		DDA3937_RS07715	0.60	+2.3
1,741,509	+		DDA3937_RS07715	0.62	+2.9
1,741,510	-		DDA3937_RS07715	0.62	+3.1
1,741,519	+		DDA3937_RS07715	0.63	+2.4
1,741,519	+		DDA3937_RS07715	0.63	+1.6
1,741,519	+		DDA3937_RS07715	0.63	+2.3
1,741,520	-		DDA3937_RS07715	0.63	+0.3
1,741,520	-		DDA3937_RS07715	0.63	+1.3
1,741,522	+		DDA3937_RS07715	0.63	+3.2
1,741,523	-		DDA3937_RS07715	0.63	-1.0
1,741,628	+		DDA3937_RS07715	0.68	+2.3
1,741,629	-		DDA3937_RS07715	0.68	+0.1
1,741,656	+		DDA3937_RS07715	0.69	+3.0
1,741,656	+		DDA3937_RS07715	0.69	+1.7
1,741,656	+		DDA3937_RS07715	0.69	+1.5
1,741,657	-		DDA3937_RS07715	0.69	-1.5
1,741,657	-		DDA3937_RS07715	0.69	+2.4
1,741,678	+		DDA3937_RS07715	0.70	+2.8
1,741,890	+		DDA3937_RS07715	0.80	+2.8
1,741,890	+		DDA3937_RS07715	0.80	+4.3
1,741,891	-		DDA3937_RS07715	0.80	+1.6
1,741,896	-		DDA3937_RS07715	0.80	-1.4
1,741,984	+		DDA3937_RS07715	0.85	+2.3
1,741,984	+		DDA3937_RS07715	0.85	+3.4
1,741,985	-		DDA3937_RS07715	0.85	+1.3
1,742,002	+		DDA3937_RS07715	0.85	+2.8
1,742,065	+		DDA3937_RS07715	0.88	+2.1
1,742,096	-		DDA3937_RS07715	0.90	+1.7
1,742,211	-				-1.5
1,742,223	-				+1.5
1,742,223	-				+0.6
1,742,312	+				+0.5
1,742,313	-				+2.4
1,742,336	+				-1.9
1,742,344	+				+0.6
1,742,346	+				-2.4
1,742,357	+				-0.9
1,742,362	-				+1.0
1,742,404	-				+1.6
1,742,492	+				+1.1
1,742,520	+				-1.9
1,742,572	-				-1.0
1,742,679	+		DDA3937_RS07720	0.14	-1.0
1,742,679	+		DDA3937_RS07720	0.14	+0.3
1,742,680	-		DDA3937_RS07720	0.14	-0.6
1,742,680	-		DDA3937_RS07720	0.14	+1.9
1,742,694	+		DDA3937_RS07720	0.15	-0.6
1,742,800	+		DDA3937_RS07720	0.21	-0.3
1,742,800	+		DDA3937_RS07720	0.21	-0.1
1,742,801	-		DDA3937_RS07720	0.21	+3.7
1,742,801	-		DDA3937_RS07720	0.21	+2.0
1,742,802	+		DDA3937_RS07720	0.21	+0.3
1,742,802	+		DDA3937_RS07720	0.21	+1.2
1,742,803	-		DDA3937_RS07720	0.21	-0.3
1,742,803	-		DDA3937_RS07720	0.21	+2.5
1,742,889	+		DDA3937_RS07720	0.25	-2.4
1,742,889	+		DDA3937_RS07720	0.25	-1.7
1,742,890	-		DDA3937_RS07720	0.25	-2.2
1,742,890	-		DDA3937_RS07720	0.25	+2.5
1,743,029	-		DDA3937_RS07720	0.33	-2.6
1,743,134	+		DDA3937_RS07720	0.39	-2.4
1,743,134	+		DDA3937_RS07720	0.39	+1.3
1,743,134	+		DDA3937_RS07720	0.39	+0.4
1,743,134	+		DDA3937_RS07720	0.39	-3.1
1,743,134	+		DDA3937_RS07720	0.39	+0.6
1,743,135	-		DDA3937_RS07720	0.39	+0.8
1,743,135	-		DDA3937_RS07720	0.39	-2.6
1,743,135	-		DDA3937_RS07720	0.39	+1.5
1,743,161	+		DDA3937_RS07720	0.40	+1.7
1,743,198	-		DDA3937_RS07720	0.42	+3.1
1,743,251	+		DDA3937_RS07720	0.45	+3.5
1,743,252	-		DDA3937_RS07720	0.45	+1.5
1,743,252	-		DDA3937_RS07720	0.45	+1.4
1,743,257	+		DDA3937_RS07720	0.45	+2.1
1,743,257	+		DDA3937_RS07720	0.45	-1.1
1,743,257	+		DDA3937_RS07720	0.45	+0.5
1,743,282	+		DDA3937_RS07720	0.47	-0.4
1,743,282	+		DDA3937_RS07720	0.47	-2.2
1,743,282	+		DDA3937_RS07720	0.47	-0.0
1,743,282	+		DDA3937_RS07720	0.47	-1.7
1,743,283	-		DDA3937_RS07720	0.47	+2.4