Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07645

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,721,787	+				-1.3
1,721,787	+				-3.6
1,721,788	-				+0.9
1,721,788	-				-0.7
1,721,788	-				-3.1
1,721,803	-				-1.9
1,722,010	+		DDA3937_RS07640	0.30	+0.5
1,722,011	-		DDA3937_RS07640	0.30	+0.4
1,722,011	-				+1.3
1,722,011	-		DDA3937_RS07640	0.30	-2.0
1,722,067	-		DDA3937_RS07640	0.37	-3.2
1,722,067	-		DDA3937_RS07640	0.37	-1.4
1,722,112	+		DDA3937_RS07640	0.43	-1.5
1,722,112	+		DDA3937_RS07640	0.43	+2.0
1,722,113	-		DDA3937_RS07640	0.43	-1.1
1,722,113	-		DDA3937_RS07640	0.43	-1.0
1,722,113	-				-1.3
1,722,113	-		DDA3937_RS07640	0.43	-1.8
1,722,229	+		DDA3937_RS07640	0.59	-2.6
1,722,230	-		DDA3937_RS07640	0.59	-1.0
1,722,263	-		DDA3937_RS07640	0.63	+0.7
1,722,295	-		DDA3937_RS07640	0.68	-2.4
1,722,330	+		DDA3937_RS07640	0.72	-0.5
1,722,330	+		DDA3937_RS07640	0.72	-4.1
1,722,330	+		DDA3937_RS07640	0.72	-1.0
1,722,531	+				-2.5
1,722,532	-				-0.1
1,722,532	-				+2.8
1,722,535	+				+0.3
1,722,535	+				-2.7
1,722,535	+				-2.3
1,722,535	+				+2.3
1,722,535	+				-0.3
1,722,535	+				-1.3
1,722,536	-				-1.7
1,722,536	-				-3.7
1,722,536	-				-1.9
1,722,536	-				+0.7
1,722,536	-				-2.5
1,722,536	-				+1.0
1,722,536	-				-1.3
1,722,536	-				-0.7
1,722,536	-				+1.1
1,722,536	-				+0.9
1,722,536	-				-0.8
1,722,536	-				+0.5
1,722,536	-				-1.3
1,722,536	-				+1.9
1,722,536	-				-0.8
1,722,536	-				-0.7
1,722,536	-				-1.9
1,722,569	+				+0.3
1,722,569	+				-2.3
1,722,570	-				+1.7
1,722,570	-				-1.3
1,722,570	-				-3.1
1,722,570	-				-1.3
1,722,603	+				+0.4
1,722,603	+				-0.5
1,722,604	-				+0.1
1,722,604	-				+0.7
1,722,617	+				+1.8
1,722,617	+				-1.0
1,722,617	+				-0.7
1,722,618	-				-1.0
1,722,618	-				-0.7
1,722,618	-				-1.9
1,722,619	-				-1.0
1,722,651	+				-2.0
1,722,651	+				-0.5
1,722,651	+				-0.2
1,722,651	+				+0.4
1,722,652	-				-0.3
1,722,754	+				-2.5
1,722,755	-				-1.3
1,722,773	-				+1.9
1,722,793	+				-2.4
1,722,793	+				-1.9
1,722,898	+		DDA3937_RS07645	0.19	-0.2
1,722,898	+		DDA3937_RS07645	0.19	-1.0
1,722,898	+		DDA3937_RS07645	0.19	-2.0
1,722,898	+		DDA3937_RS07645	0.19	-0.2
1,722,899	-		DDA3937_RS07645	0.19	-1.9
1,722,899	-		DDA3937_RS07645	0.19	-1.5
1,722,899	-				+0.3
1,722,905	-		DDA3937_RS07645	0.19	-1.5
1,722,905	-				+0.3
1,722,945	+		DDA3937_RS07645	0.24	-0.1
1,722,945	+		DDA3937_RS07645	0.24	+0.6
1,722,945	+		DDA3937_RS07645	0.24	+1.5
1,722,992	+		DDA3937_RS07645	0.29	-0.7
1,722,992	+		DDA3937_RS07645	0.29	+1.6
1,722,993	-		DDA3937_RS07645	0.29	-2.5
1,722,993	-		DDA3937_RS07645	0.29	-0.0
1,722,993	-		DDA3937_RS07645	0.29	-1.5
1,723,056	-		DDA3937_RS07645	0.36	+1.5
1,723,056	-		DDA3937_RS07645	0.36	-0.7
1,723,122	+		DDA3937_RS07645	0.44	-3.7
1,723,122	+		DDA3937_RS07645	0.44	-0.7
1,723,123	-		DDA3937_RS07645	0.44	-1.7
1,723,123	-		DDA3937_RS07645	0.44	+1.9
1,723,134	+		DDA3937_RS07645	0.45	+1.5
1,723,173	+		DDA3937_RS07645	0.50	+0.2
1,723,173	+		DDA3937_RS07645	0.50	+1.5
1,723,174	-		DDA3937_RS07645	0.50	+0.2
1,723,174	-		DDA3937_RS07645	0.50	-1.0
1,723,174	-		DDA3937_RS07645	0.50	-2.1
1,723,174	-		DDA3937_RS07645	0.50	-1.3
1,723,174	-		DDA3937_RS07645	0.50	-1.9
1,723,174	-		DDA3937_RS07645	0.50	-2.9
1,723,174	-		DDA3937_RS07645	0.50	-0.9
1,723,174	-		DDA3937_RS07645	0.50	+0.0
1,723,176	+		DDA3937_RS07645	0.50	+0.1
1,723,176	+		DDA3937_RS07645	0.50	+0.1
1,723,176	+		DDA3937_RS07645	0.50	-0.7
1,723,176	+		DDA3937_RS07645	0.50	-1.1
1,723,176	+		DDA3937_RS07645	0.50	-1.7
1,723,177	-		DDA3937_RS07645	0.50	-2.7
1,723,177	-		DDA3937_RS07645	0.50	-0.7
1,723,177	-		DDA3937_RS07645	0.50	-2.5
1,723,177	-		DDA3937_RS07645	0.50	-2.5
1,723,177	-		DDA3937_RS07645	0.50	+0.5
1,723,237	-		DDA3937_RS07645	0.57	+0.2
1,723,275	+		DDA3937_RS07645	0.61	+0.2
1,723,383	-		DDA3937_RS07645	0.73	+2.5
1,723,430	+				+0.3
1,723,574	+				-1.3
1,723,574	+				+0.5
1,723,574	+				-1.5
1,723,587	+				-1.8
1,723,587	+				+0.8
1,723,593	+				+1.1
1,723,593	+				+0.2
1,723,593	+				+0.4
1,723,594	-				+0.5
1,723,594	-				-0.3
1,723,594	-				+1.3
1,723,597	+				-3.8
1,723,597	+				-2.7
1,723,597	+				+0.6
1,723,597	+				+0.3
1,723,597	+				-2.4
1,723,597	+				-1.3
1,723,597	+				+1.0
1,723,597	+				+2.1
1,723,598	-				-0.1
1,723,598	-				-1.5
1,723,598	-				-2.4
1,723,598	-				-3.4
1,723,598	-				+1.7
1,723,598	-				+1.8
1,723,598	-				-0.2
1,723,598	-				+0.5
1,723,598	-				-0.8
1,723,602	+				-2.9
1,723,602	+				-1.0
1,723,603	-				-1.6
1,723,603	-				-2.7
1,723,603	-				-0.9
1,723,603	-				+0.5
1,723,603	-				-1.3
1,723,603	-				-2.1
1,723,608	+				-1.0
1,723,608	+				+0.2
1,723,609	-				-4.0
1,723,651	-				+0.2
1,723,652	+				+0.7
1,723,652	+				-1.9
1,723,653	-				-1.4
1,723,682	+				-1.3
1,723,865	+		DDA3937_RS07650	0.16	+1.2
1,723,875	+		DDA3937_RS07650	0.17	-1.7
1,723,875	+		DDA3937_RS07650	0.17	-1.0
1,724,121	+		DDA3937_RS07650	0.44	+0.4
1,724,178	+		DDA3937_RS07650	0.50	+0.3
1,724,179	-		DDA3937_RS07650	0.50	-3.1
1,724,240	-		DDA3937_RS07650	0.56	+1.5
1,724,346	+		DDA3937_RS07650	0.68	-3.1
1,724,407	-		DDA3937_RS07650	0.75	+1.3
1,724,426	+		DDA3937_RS07650	0.77	+2.1
1,724,446	-		DDA3937_RS07650	0.79	-2.8
1,724,551	+				+1.1