Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07510

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,694,674	+		DDA3937_RS07505	0.23	-1.9
1,694,732	+		DDA3937_RS07505	0.30	-2.0
1,694,732	+		DDA3937_RS07505	0.30	-0.3
1,694,732	+		DDA3937_RS07505	0.30	-0.4
1,694,732	+		DDA3937_RS07505	0.30	+1.0
1,694,732	+		DDA3937_RS07505	0.30	+0.2
1,694,732	+		DDA3937_RS07505	0.30	-1.5
1,694,733	-		DDA3937_RS07505	0.30	+0.4
1,694,733	-		DDA3937_RS07505	0.30	-1.5
1,694,733	-		DDA3937_RS07505	0.30	-0.0
1,694,733	-		DDA3937_RS07505	0.30	+1.3
1,694,733	-		DDA3937_RS07505	0.30	-0.3
1,694,733	-		DDA3937_RS07505	0.30	-1.7
1,694,734	+		DDA3937_RS07505	0.30	+1.1
1,694,734	+		DDA3937_RS07505	0.30	-0.7
1,694,753	-		DDA3937_RS07505	0.32	-1.3
1,694,753	-		DDA3937_RS07505	0.32	-0.3
1,694,854	+		DDA3937_RS07505	0.44	-3.0
1,694,854	+		DDA3937_RS07505	0.44	+0.2
1,694,854	+		DDA3937_RS07505	0.44	-2.3
1,694,855	-		DDA3937_RS07505	0.44	+0.9
1,695,056	+		DDA3937_RS07505	0.67	-0.5
1,695,069	+		DDA3937_RS07505	0.69	+2.5
1,695,205	+		DDA3937_RS07505	0.84	+1.1
1,695,206	-		DDA3937_RS07505	0.85	+0.7
1,695,206	-		DDA3937_RS07505	0.85	-1.0
1,695,316	-				-0.5
1,695,319	+				+1.0
1,695,319	+				+0.3
1,695,319	+				+0.2
1,695,320	-				-1.7
1,695,320	-				+1.9
1,695,352	+				+0.9
1,695,352	+				-0.2
1,695,380	+				+2.1
1,695,380	+				+1.3
1,695,380	+				-0.0
1,695,380	+				+0.1
1,695,380	+				+1.4
1,695,381	-				-2.5
1,695,493	-				+0.5
1,695,554	+				-0.0
1,695,555	-				-0.7
1,695,574	+				-1.5
1,695,630	+				+1.0
1,695,750	-		DDA3937_RS07510	0.18	-1.6
1,695,814	+		DDA3937_RS07510	0.24	+2.3
1,695,885	+		DDA3937_RS07510	0.30	-2.2
1,695,886	-		DDA3937_RS07510	0.30	-2.9
1,695,886	-		DDA3937_RS07510	0.30	-0.9
1,696,112	+		DDA3937_RS07510	0.51	-3.3
1,696,113	-		DDA3937_RS07510	0.51	+2.8
1,696,113	-		DDA3937_RS07510	0.51	-1.7
1,696,127	+		DDA3937_RS07510	0.52	-0.2
1,696,263	+		DDA3937_RS07510	0.64	+0.9
1,696,263	+		DDA3937_RS07510	0.64	+0.5
1,696,264	-		DDA3937_RS07510	0.64	-1.5
1,696,264	-		DDA3937_RS07510	0.64	-1.0
1,696,264	-		DDA3937_RS07510	0.64	-0.7
1,696,264	-		DDA3937_RS07510	0.64	-2.3
1,696,265	+				-0.7
1,696,265	+		DDA3937_RS07510	0.64	-2.9
1,696,265	+		DDA3937_RS07510	0.64	+0.4
1,696,265	+		DDA3937_RS07510	0.64	+1.3
1,696,265	+		DDA3937_RS07510	0.64	-3.3
1,696,265	+		DDA3937_RS07510	0.64	-2.3
1,696,266	-		DDA3937_RS07510	0.65	-2.0
1,696,266	-		DDA3937_RS07510	0.65	-2.2
1,696,267	+		DDA3937_RS07510	0.65	-1.4
1,696,267	+		DDA3937_RS07510	0.65	-0.0
1,696,267	+		DDA3937_RS07510	0.65	-0.7
1,696,267	+		DDA3937_RS07510	0.65	-2.6
1,696,267	+		DDA3937_RS07510	0.65	-2.3
1,696,267	+		DDA3937_RS07510	0.65	-3.2
1,696,267	+		DDA3937_RS07510	0.65	-0.7
1,696,267	+		DDA3937_RS07510	0.65	-1.3
1,696,267	+		DDA3937_RS07510	0.65	+2.2
1,696,267	+		DDA3937_RS07510	0.65	-2.0
1,696,267	+		DDA3937_RS07510	0.65	+1.9
1,696,267	+		DDA3937_RS07510	0.65	+0.7
1,696,268	-		DDA3937_RS07510	0.65	-1.0
1,696,268	-		DDA3937_RS07510	0.65	-1.3
1,696,268	-		DDA3937_RS07510	0.65	-1.1
1,696,268	-		DDA3937_RS07510	0.65	-1.7
1,696,268	-		DDA3937_RS07510	0.65	-1.7
1,696,268	-		DDA3937_RS07510	0.65	+1.7
1,696,268	-		DDA3937_RS07510	0.65	-1.9
1,696,268	-		DDA3937_RS07510	0.65	-2.5
1,696,268	-		DDA3937_RS07510	0.65	-1.3
1,696,268	-		DDA3937_RS07510	0.65	+0.2
1,696,268	-		DDA3937_RS07510	0.65	-3.0
1,696,268	-		DDA3937_RS07510	0.65	-1.5
1,696,460	+		DDA3937_RS07510	0.82	-1.5
1,696,484	+		DDA3937_RS07510	0.84	+0.1
1,696,488	-		DDA3937_RS07510	0.85	-1.9
1,696,488	-		DDA3937_RS07510	0.85	+0.2
1,696,589	+				-3.0
1,696,589	+				-1.7
1,696,589	+				-1.6
1,696,590	-				-1.0
1,696,590	-				-2.3
1,696,590	-				-0.6
1,696,590	-				+1.3
1,696,590	-				-0.7
1,696,623	+				-1.6
1,696,628	+				+0.4
1,696,628	+				-0.4
1,696,628	+				-1.2
1,696,628	+				-1.0
1,696,629	-				-2.3
1,696,645	+				-2.0
1,696,692	-				-0.1
1,696,701	+				-0.7
1,696,808	+		DDA3937_RS07515	0.14	+0.7
1,696,808	+		DDA3937_RS07515	0.14	+2.6
1,696,808	+		DDA3937_RS07515	0.14	-1.4
1,696,809	-		DDA3937_RS07515	0.14	+1.3
1,696,809	-		DDA3937_RS07515	0.14	-0.8
1,696,809	-		DDA3937_RS07515	0.14	+2.2
1,696,809	-		DDA3937_RS07515	0.14	+2.8
1,696,809	-				+0.3
1,696,897	-		DDA3937_RS07515	0.24	+0.0
1,696,935	+		DDA3937_RS07515	0.28	+2.1
1,696,936	-		DDA3937_RS07515	0.28	-2.7
1,696,977	-				+2.5
1,696,997	+		DDA3937_RS07515	0.35	-1.9
1,696,997	+		DDA3937_RS07515	0.35	+2.2
1,696,997	+		DDA3937_RS07515	0.35	-1.3
1,696,997	+		DDA3937_RS07515	0.35	-2.0
1,696,998	-		DDA3937_RS07515	0.36	+0.3
1,696,998	-		DDA3937_RS07515	0.36	-1.9
1,696,998	-		DDA3937_RS07515	0.36	-2.0
1,697,048	+		DDA3937_RS07515	0.41	-2.9
1,697,048	+		DDA3937_RS07515	0.41	+1.6
1,697,048	+		DDA3937_RS07515	0.41	+0.9
1,697,261	+		DDA3937_RS07515	0.66	-0.4
1,697,261	+		DDA3937_RS07515	0.66	+0.1
1,697,261	+		DDA3937_RS07515	0.66	+0.7
1,697,262	-		DDA3937_RS07515	0.66	+0.6
1,697,277	+		DDA3937_RS07515	0.68	+0.1
1,697,342	-		DDA3937_RS07515	0.75	-0.2
1,697,448	+		DDA3937_RS07515	0.87	-2.9
1,697,448	+		DDA3937_RS07515	0.87	-2.8
1,697,448	+		DDA3937_RS07515	0.87	-1.9
1,697,449	-		DDA3937_RS07515	0.88	+0.1
1,697,449	-		DDA3937_RS07515	0.88	-2.3
1,697,550	+				+3.4
1,697,550	+				+1.7
1,697,550	+				+2.2
1,697,550	+				+0.9
1,697,551	-				+0.8
1,697,551	-				-0.7
1,697,551	-				+2.5
1,697,551	-				+2.4
1,697,551	-				-0.0
1,697,551	-				-3.2
1,697,609	+		DDA3937_RS07520	0.11	+1.7