Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07395

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,667,584	-				-1.3
1,667,605	+				+1.9
1,667,815	+		DDA3937_RS07390	0.27	-0.7
1,667,815	+		DDA3937_RS07390	0.27	-2.6
1,667,816	-		DDA3937_RS07390	0.27	+0.3
1,667,816	-		DDA3937_RS07390	0.27	-1.9
1,667,848	+		DDA3937_RS07390	0.31	-0.3
1,667,848	+		DDA3937_RS07390	0.31	-1.6
1,667,848	+		DDA3937_RS07390	0.31	+0.6
1,667,848	+		DDA3937_RS07390	0.31	+0.8
1,667,849	-		DDA3937_RS07390	0.31	+0.3
1,667,982	+		DDA3937_RS07390	0.46	-1.7
1,667,982	+		DDA3937_RS07390	0.46	-0.6
1,667,982	+		DDA3937_RS07390	0.46	-2.0
1,668,023	-		DDA3937_RS07390	0.50	-0.9
1,668,023	-		DDA3937_RS07390	0.50	-0.3
1,668,023	-		DDA3937_RS07390	0.50	-0.3
1,668,057	+		DDA3937_RS07390	0.54	-1.6
1,668,064	-		DDA3937_RS07390	0.55	-0.0
1,668,075	+		DDA3937_RS07390	0.56	+1.3
1,668,076	-		DDA3937_RS07390	0.56	-0.5
1,668,076	-		DDA3937_RS07390	0.56	-1.0
1,668,126	+		DDA3937_RS07390	0.62	+1.5
1,668,126	+		DDA3937_RS07390	0.62	-3.4
1,668,157	+		DDA3937_RS07390	0.65	+0.9
1,668,158	-		DDA3937_RS07390	0.65	+0.9
1,668,158	-		DDA3937_RS07390	0.65	+1.2
1,668,172	+		DDA3937_RS07390	0.67	-0.5
1,668,172	+		DDA3937_RS07390	0.67	-0.3
1,668,172	+		DDA3937_RS07390	0.67	-0.3
1,668,173	-		DDA3937_RS07390	0.67	-3.6
1,668,173	-				+1.3
1,668,173	-		DDA3937_RS07390	0.67	-1.9
1,668,225	+		DDA3937_RS07390	0.73	-2.2
1,668,385	+				+1.0
1,668,385	+				-1.5
1,668,385	+				-0.2
1,668,385	+				-0.5
1,668,386	-				+0.7
1,668,386	-				-2.7
1,668,386	-				-2.3
1,668,386	-				-1.5
1,668,386	-				-0.9
1,668,386	-				-2.0
1,668,386	-				-0.3
1,668,521	-				+1.8
1,668,521	-				-1.5
1,668,532	+				-0.6
1,668,536	+				-2.0
1,668,537	-				-1.7
1,668,657	+				+0.7
1,668,658	-				+1.0
1,668,658	-				+0.2
1,668,658	-				-1.5
1,668,872	+		DDA3937_RS07395	0.24	+0.9
1,668,873	-		DDA3937_RS07395	0.25	-1.3
1,668,873	-		DDA3937_RS07395	0.25	+0.8
1,668,908	+		DDA3937_RS07395	0.27	+3.5
1,668,908	+		DDA3937_RS07395	0.27	+0.7
1,668,908	+		DDA3937_RS07395	0.27	+0.6
1,668,908	+		DDA3937_RS07395	0.27	+0.3
1,668,909	-		DDA3937_RS07395	0.27	+2.1
1,668,909	-		DDA3937_RS07395	0.27	-2.0
1,668,909	-		DDA3937_RS07395	0.27	+0.3
1,668,909	-		DDA3937_RS07395	0.27	+0.9
1,668,909	-		DDA3937_RS07395	0.27	+1.2
1,669,151	+		DDA3937_RS07395	0.46	-1.3
1,669,152	-		DDA3937_RS07395	0.46	+1.1
1,669,152	-		DDA3937_RS07395	0.46	+0.9
1,669,152	-		DDA3937_RS07395	0.46	-0.3
1,669,181	+		DDA3937_RS07395	0.48	+0.5
1,669,181	+		DDA3937_RS07395	0.48	-2.4
1,669,181	+		DDA3937_RS07395	0.48	-0.7
1,669,181	+		DDA3937_RS07395	0.48	-0.8
1,669,182	-		DDA3937_RS07395	0.49	+2.7
1,669,182	-		DDA3937_RS07395	0.49	+2.3
1,669,259	+		DDA3937_RS07395	0.54	-1.5
1,669,260	-		DDA3937_RS07395	0.55	+0.3
1,669,329	+		DDA3937_RS07395	0.60	-0.1
1,669,330	-		DDA3937_RS07395	0.60	+2.9
1,669,330	-		DDA3937_RS07395	0.60	-2.9
1,669,434	+		DDA3937_RS07395	0.68	+0.2
1,669,434	+		DDA3937_RS07395	0.68	+0.4
1,669,434	+		DDA3937_RS07395	0.68	-1.9
1,669,434	+		DDA3937_RS07395	0.68	-0.5
1,669,434	+		DDA3937_RS07395	0.68	+1.8
1,669,596	+		DDA3937_RS07395	0.81	-1.7
1,669,596	+		DDA3937_RS07395	0.81	-0.3
1,669,597	-		DDA3937_RS07395	0.81	-0.7
1,669,597	-		DDA3937_RS07395	0.81	-1.1
1,669,597	-		DDA3937_RS07395	0.81	-1.7
1,669,722	+				-1.2
1,669,722	+				-0.7
1,669,723	-				-3.4
1,669,725	+				+0.1
1,669,725	+				-1.3
1,669,725	+				-0.7
1,669,726	-				+1.3
1,669,726	-				-0.8
1,669,726	-				+1.7
1,669,766	+				-3.1
1,669,766	+				+0.1
1,669,795	-				-1.3
1,669,816	+				+1.5
1,669,816	+				-1.9
1,669,817	-				+2.2
1,669,817	-				+0.6
1,669,823	-				-3.2
1,669,826	-				-1.9
1,669,828	+				-1.5
1,669,828	+				-0.3
1,669,846	-				-0.7
1,669,846	-				+2.3
1,669,847	+				-0.7
1,669,848	-				-0.3
1,669,848	-				-1.0
1,669,848	-				+1.2
1,669,848	-				+0.5
1,669,869	-				-0.6
1,669,889	+				+0.4
1,669,924	+				-0.3
1,669,925	-				-0.7
1,669,925	-				-0.3
1,669,978	+				+0.1
1,669,979	-				-1.3
1,670,020	-				-0.9
1,670,059	-				-0.3
1,670,092	+				-3.3
1,670,093	-				-1.3
1,670,093	-				-1.8
1,670,093	-				-1.0
1,670,094	+				+2.2
1,670,094	+				-1.5
1,670,094	+				-1.7
1,670,094	+				+1.6
1,670,094	+				+0.9
1,670,094	+				-1.3
1,670,094	+				+1.5
1,670,094	+				-1.1
1,670,095	-				-0.5
1,670,095	-				-0.4
1,670,095	-				-2.0
1,670,095	-				+1.3
1,670,095	-				-0.9
1,670,095	-				-0.4
1,670,095	-				-1.0
1,670,095	-				-2.4
1,670,095	-				-0.6
1,670,095	-				-1.3
1,670,095	-				-3.2
1,670,095	-				+0.8
1,670,095	-				-0.0
1,670,097	+				-1.3
1,670,098	-				-1.9
1,670,101	+				-2.6
1,670,102	-				+0.0
1,670,103	+				-1.0
1,670,104	-				+1.0
1,670,104	-				+0.2
1,670,104	-				-3.3
1,670,105	+				-1.7
1,670,105	+				-1.8
1,670,124	-				-1.3
1,670,286	+				-2.0
1,670,324	+				+1.3
1,670,324	+				-0.6
1,670,440	-				-1.1
1,670,445	+				+1.0
1,670,449	+				-0.3
1,670,522	+				-1.3
1,670,522	+				-1.0
1,670,522	+				-0.3
1,670,555	+				+1.3
1,670,563	-				-1.0
1,670,613	-				-1.0
1,670,676	+				+1.6
1,670,676	+				-1.7
1,670,677	-				+1.5
1,670,677	-				+1.1
1,670,715	+				-1.9
1,670,715	+				-0.7
1,670,715	+				+0.1
1,670,715	+				-0.2
1,670,715	+				+0.4
1,670,716	-				-0.2
1,670,716	-				-2.8
1,670,720	+				+1.1
1,670,720	+				-1.3
1,670,720	+				+1.7
1,670,720	+				-0.7
1,670,721	-				-1.0
1,670,721	-				+2.0
1,670,721	-				+0.5
1,670,721	-				-1.5
1,670,733	+				+1.0
1,670,733	+				-2.5
1,670,733	+				+1.1
1,670,733	+				-2.6
1,670,733	+				-1.1
1,670,733	+				+0.8
1,670,733	+				-1.7
1,670,733	+				+0.9
1,670,734	-				+0.2
1,670,734	-				-0.3
1,670,734	-				-1.9
1,670,734	-				+0.6
1,670,737	+				-1.0
1,670,737	+				-1.2
1,670,737	+				+0.1
1,670,737	+				+0.6
1,670,737	+				-1.7
1,670,738	-				-0.7
1,670,738	-				-1.7
1,670,752	-				-1.0
1,670,800	-				-0.1
1,670,800	-				-2.3