Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07390

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,666,579	+				-1.3
1,666,579	+				+0.4
1,666,580	-				-1.9
1,666,664	+				+1.1
1,666,740	+				+0.6
1,666,744	-				+1.3
1,666,788	+		DDA3937_RS07385	0.11	-1.3
1,666,936	-		DDA3937_RS07385	0.32	+0.3
1,666,936	-		DDA3937_RS07385	0.32	+0.0
1,666,941	+		DDA3937_RS07385	0.33	-1.7
1,666,941	+		DDA3937_RS07385	0.33	-1.5
1,666,941	+		DDA3937_RS07385	0.33	-0.7
1,666,941	+		DDA3937_RS07385	0.33	+0.7
1,666,942	-		DDA3937_RS07385	0.33	-1.3
1,666,942	-		DDA3937_RS07385	0.33	+0.9
1,666,987	+		DDA3937_RS07385	0.39	+0.9
1,666,987	+		DDA3937_RS07385	0.39	-0.4
1,666,987	+		DDA3937_RS07385	0.39	-1.0
1,666,988	-		DDA3937_RS07385	0.39	+0.7
1,667,111	-		DDA3937_RS07385	0.56	-0.1
1,667,223	+		DDA3937_RS07385	0.72	-1.0
1,667,223	+		DDA3937_RS07385	0.72	-3.3
1,667,223	+		DDA3937_RS07385	0.72	-0.4
1,667,223	+		DDA3937_RS07385	0.72	+2.6
1,667,223	+		DDA3937_RS07385	0.72	+1.0
1,667,223	+		DDA3937_RS07385	0.72	-1.9
1,667,223	+		DDA3937_RS07385	0.72	-0.4
1,667,224	-		DDA3937_RS07385	0.72	-1.5
1,667,224	-		DDA3937_RS07385	0.72	-0.7
1,667,224	-		DDA3937_RS07385	0.72	+1.2
1,667,224	-		DDA3937_RS07385	0.72	-0.5
1,667,266	+		DDA3937_RS07385	0.78	-2.2
1,667,266	+		DDA3937_RS07385	0.78	+0.3
1,667,267	-		DDA3937_RS07385	0.78	+2.7
1,667,317	+		DDA3937_RS07385	0.85	-1.5
1,667,317	+		DDA3937_RS07385	0.85	-2.3
1,667,317	+		DDA3937_RS07385	0.85	-2.9
1,667,317	+		DDA3937_RS07385	0.85	-2.0
1,667,317	+		DDA3937_RS07385	0.85	-1.4
1,667,317	+		DDA3937_RS07385	0.85	+1.3
1,667,317	+		DDA3937_RS07385	0.85	-0.7
1,667,318	-		DDA3937_RS07385	0.85	+1.5
1,667,318	-		DDA3937_RS07385	0.85	-0.7
1,667,318	-		DDA3937_RS07385	0.85	-2.0
1,667,318	-		DDA3937_RS07385	0.85	-0.3
1,667,318	-		DDA3937_RS07385	0.85	-1.0
1,667,318	-		DDA3937_RS07385	0.85	+1.7
1,667,318	-		DDA3937_RS07385	0.85	-2.0
1,667,318	-		DDA3937_RS07385	0.85	-0.0
1,667,318	-		DDA3937_RS07385	0.85	-0.8
1,667,412	-				-1.7
1,667,512	+				-1.8
1,667,513	-				+0.4
1,667,532	+				+1.1
1,667,544	+				-1.1
1,667,584	-				-1.3
1,667,605	+				+1.9
1,667,815	+		DDA3937_RS07390	0.27	-0.7
1,667,815	+		DDA3937_RS07390	0.27	-2.6
1,667,816	-		DDA3937_RS07390	0.27	+0.3
1,667,816	-		DDA3937_RS07390	0.27	-1.9
1,667,848	+		DDA3937_RS07390	0.31	-0.3
1,667,848	+		DDA3937_RS07390	0.31	-1.6
1,667,848	+		DDA3937_RS07390	0.31	+0.6
1,667,848	+		DDA3937_RS07390	0.31	+0.8
1,667,849	-		DDA3937_RS07390	0.31	+0.3
1,667,982	+		DDA3937_RS07390	0.46	-1.7
1,667,982	+		DDA3937_RS07390	0.46	-0.6
1,667,982	+		DDA3937_RS07390	0.46	-2.0
1,668,023	-		DDA3937_RS07390	0.50	-0.9
1,668,023	-		DDA3937_RS07390	0.50	-0.3
1,668,023	-		DDA3937_RS07390	0.50	-0.3
1,668,057	+		DDA3937_RS07390	0.54	-1.6
1,668,064	-		DDA3937_RS07390	0.55	-0.0
1,668,075	+		DDA3937_RS07390	0.56	+1.3
1,668,076	-		DDA3937_RS07390	0.56	-0.5
1,668,076	-		DDA3937_RS07390	0.56	-1.0
1,668,126	+		DDA3937_RS07390	0.62	+1.5
1,668,126	+		DDA3937_RS07390	0.62	-3.4
1,668,157	+		DDA3937_RS07390	0.65	+0.9
1,668,158	-		DDA3937_RS07390	0.65	+0.9
1,668,158	-		DDA3937_RS07390	0.65	+1.2
1,668,172	+		DDA3937_RS07390	0.67	-0.5
1,668,172	+		DDA3937_RS07390	0.67	-0.3
1,668,172	+		DDA3937_RS07390	0.67	-0.3
1,668,173	-		DDA3937_RS07390	0.67	-3.6
1,668,173	-				+1.3
1,668,173	-		DDA3937_RS07390	0.67	-1.9
1,668,225	+		DDA3937_RS07390	0.73	-2.2
1,668,385	+				+1.0
1,668,385	+				-1.5
1,668,385	+				-0.2
1,668,385	+				-0.5
1,668,386	-				+0.7
1,668,386	-				-2.7
1,668,386	-				-2.3
1,668,386	-				-1.5
1,668,386	-				-0.9
1,668,386	-				-2.0
1,668,386	-				-0.3
1,668,521	-				+1.8
1,668,521	-				-1.5
1,668,532	+				-0.6
1,668,536	+				-2.0
1,668,537	-				-1.7
1,668,657	+				+0.7
1,668,658	-				+1.0
1,668,658	-				+0.2
1,668,658	-				-1.5
1,668,872	+		DDA3937_RS07395	0.24	+0.9
1,668,873	-		DDA3937_RS07395	0.25	-1.3
1,668,873	-		DDA3937_RS07395	0.25	+0.8
1,668,908	+		DDA3937_RS07395	0.27	+3.5
1,668,908	+		DDA3937_RS07395	0.27	+0.7
1,668,908	+		DDA3937_RS07395	0.27	+0.6
1,668,908	+		DDA3937_RS07395	0.27	+0.3
1,668,909	-		DDA3937_RS07395	0.27	+2.1
1,668,909	-		DDA3937_RS07395	0.27	-2.0
1,668,909	-		DDA3937_RS07395	0.27	+0.3
1,668,909	-		DDA3937_RS07395	0.27	+0.9
1,668,909	-		DDA3937_RS07395	0.27	+1.2
1,669,151	+		DDA3937_RS07395	0.46	-1.3
1,669,152	-		DDA3937_RS07395	0.46	+1.1
1,669,152	-		DDA3937_RS07395	0.46	+0.9
1,669,152	-		DDA3937_RS07395	0.46	-0.3
1,669,181	+		DDA3937_RS07395	0.48	+0.5
1,669,181	+		DDA3937_RS07395	0.48	-2.4
1,669,181	+		DDA3937_RS07395	0.48	-0.7
1,669,181	+		DDA3937_RS07395	0.48	-0.8
1,669,182	-		DDA3937_RS07395	0.49	+2.7
1,669,182	-		DDA3937_RS07395	0.49	+2.3
1,669,259	+		DDA3937_RS07395	0.54	-1.5
1,669,260	-		DDA3937_RS07395	0.55	+0.3
1,669,329	+		DDA3937_RS07395	0.60	-0.1
1,669,330	-		DDA3937_RS07395	0.60	+2.9
1,669,330	-		DDA3937_RS07395	0.60	-2.9
1,669,434	+		DDA3937_RS07395	0.68	+0.2
1,669,434	+		DDA3937_RS07395	0.68	+0.4
1,669,434	+		DDA3937_RS07395	0.68	-1.9
1,669,434	+		DDA3937_RS07395	0.68	-0.5
1,669,434	+		DDA3937_RS07395	0.68	+1.8