Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07300

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,645,955	-				-1.0
1,645,983	+				-2.2
1,645,984	-				-1.7
1,645,990	+				+1.6
1,645,990	+				+0.8
1,645,991	-				-1.0
1,645,991	-				-1.9
1,645,991	-				-0.7
1,645,991	-				-2.8
1,646,001	+				-0.4
1,646,008	+				-1.7
1,646,008	+				-0.6
1,646,008	+				+1.2
1,646,009	-				+0.5
1,646,026	+				-3.6
1,646,027	-				-1.3
1,646,027	-				-0.7
1,646,027	-				-0.2
1,646,062	-				-2.2
1,646,112	+				-2.0
1,646,113	-				-0.6
1,646,115	+				-0.4
1,646,115	+				-0.9
1,646,116	-				-0.5
1,646,116	-				-2.2
1,646,142	+		DDA3937_RS07295	0.13	-1.6
1,646,143	-		DDA3937_RS07295	0.13	+0.8
1,646,143	-		DDA3937_RS07295	0.13	-0.4
1,646,143	-		DDA3937_RS07295	0.13	+3.0
1,646,143	-		DDA3937_RS07295	0.13	-1.5
1,646,187	+		DDA3937_RS07295	0.19	-0.1
1,646,188	-		DDA3937_RS07295	0.19	-0.7
1,646,289	+		DDA3937_RS07295	0.31	+1.3
1,646,290	-		DDA3937_RS07295	0.31	-2.2
1,646,312	+		DDA3937_RS07295	0.34	-1.9
1,646,313	-		DDA3937_RS07295	0.34	+0.1
1,646,313	-		DDA3937_RS07295	0.34	-1.7
1,646,350	+		DDA3937_RS07295	0.39	+1.1
1,646,350	+		DDA3937_RS07295	0.39	+1.7
1,646,350	+		DDA3937_RS07295	0.39	-2.4
1,646,351	-		DDA3937_RS07295	0.39	-0.0
1,646,351	-		DDA3937_RS07295	0.39	-0.7
1,646,352	+				-0.3
1,646,352	+		DDA3937_RS07295	0.39	-2.0
1,646,403	+		DDA3937_RS07295	0.45	-0.9
1,646,428	-		DDA3937_RS07295	0.48	-2.6
1,646,595	+		DDA3937_RS07295	0.69	+1.0
1,646,603	-		DDA3937_RS07295	0.70	-1.4
1,646,701	+		DDA3937_RS07295	0.82	-2.2
1,646,702	-		DDA3937_RS07295	0.82	+2.1
1,646,702	-		DDA3937_RS07295	0.82	+1.4
1,646,702	-		DDA3937_RS07295	0.82	-1.3
1,646,702	-		DDA3937_RS07295	0.82	-1.7
1,646,779	+				+2.9
1,646,780	-				-1.0
1,646,780	-				-0.2
1,646,781	+				-0.0
1,646,782	-				-1.7
1,646,782	-				+0.2
1,646,813	+				+4.1
1,646,813	+				-2.4
1,646,813	+				+1.1
1,646,814	-				+0.4
1,646,814	-				+2.1
1,646,819	+				-2.8
1,646,820	-				+0.4
1,646,820	-				+0.6
1,646,846	-				-0.9
1,646,925	+				-0.7
1,646,925	+				-2.2
1,647,059	+		DDA3937_RS07300	0.27	+0.3
1,647,059	+		DDA3937_RS07300	0.27	-1.6
1,647,059	+		DDA3937_RS07300	0.27	+0.6
1,647,059	+		DDA3937_RS07300	0.27	-0.9
1,647,059	+		DDA3937_RS07300	0.27	-1.5
1,647,060	-		DDA3937_RS07300	0.27	-2.2
1,647,060	-		DDA3937_RS07300	0.27	+2.9
1,647,060	-		DDA3937_RS07300	0.27	+0.6
1,647,093	+		DDA3937_RS07300	0.32	-1.5
1,647,093	+		DDA3937_RS07300	0.32	+2.7
1,647,093	+		DDA3937_RS07300	0.32	-1.4
1,647,127	+		DDA3937_RS07300	0.36	+0.6
1,647,128	-		DDA3937_RS07300	0.36	+0.3
1,647,128	-		DDA3937_RS07300	0.36	+0.5
1,647,129	+		DDA3937_RS07300	0.36	+1.8
1,647,129	+		DDA3937_RS07300	0.36	-1.0
1,647,129	+		DDA3937_RS07300	0.36	-1.5
1,647,129	+		DDA3937_RS07300	0.36	-0.2
1,647,130	-		DDA3937_RS07300	0.37	+0.9
1,647,130	-		DDA3937_RS07300	0.37	-1.5
1,647,130	-		DDA3937_RS07300	0.37	-1.0
1,647,130	-		DDA3937_RS07300	0.37	+1.8
1,647,130	-		DDA3937_RS07300	0.37	-1.0
1,647,130	-		DDA3937_RS07300	0.37	-1.8
1,647,197	+		DDA3937_RS07300	0.45	-0.3
1,647,198	-		DDA3937_RS07300	0.46	-0.3
1,647,198	-		DDA3937_RS07300	0.46	-2.6
1,647,237	-		DDA3937_RS07300	0.51	-0.7
1,647,237	-		DDA3937_RS07300	0.51	-2.6
1,647,266	+		DDA3937_RS07300	0.54	+1.7
1,647,277	+		DDA3937_RS07300	0.56	-0.8
1,647,277	+		DDA3937_RS07300	0.56	+1.2
1,647,278	-		DDA3937_RS07300	0.56	-0.7
1,647,318	+		DDA3937_RS07300	0.61	-3.4
1,647,318	+		DDA3937_RS07300	0.61	-1.7
1,647,319	-		DDA3937_RS07300	0.61	-1.9
1,647,354	+		DDA3937_RS07300	0.66	-2.8
1,647,354	+		DDA3937_RS07300	0.66	-2.8
1,647,456	+		DDA3937_RS07300	0.79	+0.1
1,647,456	+		DDA3937_RS07300	0.79	-1.4
1,647,457	-		DDA3937_RS07300	0.80	-2.4
1,647,457	-		DDA3937_RS07300	0.80	-0.8
1,647,459	+		DDA3937_RS07300	0.80	+0.2
1,647,459	+		DDA3937_RS07300	0.80	-0.1
1,647,460	-		DDA3937_RS07300	0.80	-1.8
1,647,468	+		DDA3937_RS07300	0.81	+0.9
1,647,484	+		DDA3937_RS07300	0.83	-0.6
1,647,484	+		DDA3937_RS07300	0.83	-1.6
1,647,484	+		DDA3937_RS07300	0.83	-1.6
1,647,525	+		DDA3937_RS07300	0.88	-1.5
1,647,551	+				-2.5
1,647,653	+				-1.3
1,647,731	-				-0.1
1,647,743	+				-1.9
1,647,743	+				-1.0
1,647,744	-				-3.3
1,647,744	-				-0.8
1,647,841	+				-1.7
1,647,841	+				+1.8
1,647,841	+				-0.8
1,647,842	-				-2.9
1,647,842	-				-0.9
1,647,842	-				-2.0
1,647,907	-		DDA3937_RS07305	0.19	-2.3
1,647,907	-		DDA3937_RS07305	0.19	-2.6
1,647,956	+		DDA3937_RS07305	0.29	-1.3
1,647,956	+		DDA3937_RS07305	0.29	-1.9
1,647,956	+		DDA3937_RS07305	0.29	-0.0
1,647,957	-		DDA3937_RS07305	0.29	-1.3
1,647,957	-		DDA3937_RS07305	0.29	+1.7
1,647,960	+		DDA3937_RS07305	0.30	-2.9
1,647,960	+		DDA3937_RS07305	0.30	-1.5
1,647,960	+		DDA3937_RS07305	0.30	-1.0
1,647,960	+		DDA3937_RS07305	0.30	-1.3
1,647,960	+		DDA3937_RS07305	0.30	-0.8
1,647,960	+		DDA3937_RS07305	0.30	+0.1
1,647,960	+		DDA3937_RS07305	0.30	-1.1
1,647,961	-		DDA3937_RS07305	0.30	-1.7
1,647,962	+		DDA3937_RS07305	0.30	+0.3
1,647,963	-		DDA3937_RS07305	0.31	+0.9
1,647,963	-		DDA3937_RS07305	0.31	-0.7
1,648,194	+		DDA3937_RS07305	0.80	+0.3
1,648,253	-				-2.7
1,648,273	+				-1.7
1,648,273	+				+1.2
1,648,273	+				-0.8
1,648,273	+				-2.3
1,648,273	+				-0.7
1,648,274	-				-2.0
1,648,274	-				+2.3
1,648,278	+				-1.8
1,648,279	-				-0.3
1,648,279	-				-1.1
1,648,287	+				-0.5
1,648,287	+				-1.4
1,648,287	+				+0.5
1,648,309	+				-2.2
1,648,310	-				+1.0
1,648,348	+				+1.3
1,648,409	+				+0.1
1,648,410	-				-1.1
1,648,412	+				+1.3
1,648,413	-				-1.9
1,648,421	+				+0.7
1,648,422	-		DDA3937_RS07310	0.10	-2.8
1,648,454	+		DDA3937_RS07310	0.13	-2.4
1,648,454	+		DDA3937_RS07310	0.13	-1.9
1,648,454	+		DDA3937_RS07310	0.13	-1.0
1,648,454	+		DDA3937_RS07310	0.13	-2.9
1,648,454	+		DDA3937_RS07310	0.13	-1.9
1,648,454	+		DDA3937_RS07310	0.13	-1.7
1,648,454	+		DDA3937_RS07310	0.13	-1.8
1,648,454	+		DDA3937_RS07310	0.13	-1.5
1,648,454	+		DDA3937_RS07310	0.13	-2.2
1,648,454	+		DDA3937_RS07310	0.13	-1.6
1,648,455	-		DDA3937_RS07310	0.13	-3.0
1,648,455	-		DDA3937_RS07310	0.13	-0.3
1,648,455	-		DDA3937_RS07310	0.13	+0.8
1,648,532	+		DDA3937_RS07310	0.19	-3.0
1,648,532	+		DDA3937_RS07310	0.19	-0.4
1,648,533	-		DDA3937_RS07310	0.19	-0.3
1,648,533	-		DDA3937_RS07310	0.19	+0.1
1,648,564	+		DDA3937_RS07310	0.22	+1.2