Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07205

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,623,047	-		DDA3937_RS07200	0.37	-0.7
1,623,047	-		DDA3937_RS07200	0.37	-0.5
1,623,244	-		DDA3937_RS07200	0.51	+0.1
1,623,244	-		DDA3937_RS07200	0.51	-0.4
1,623,261	+		DDA3937_RS07200	0.52	-0.5
1,623,261	+		DDA3937_RS07200	0.52	-0.7
1,623,261	+		DDA3937_RS07200	0.52	+0.6
1,623,261	+		DDA3937_RS07200	0.52	-0.4
1,623,262	-		DDA3937_RS07200	0.52	-0.9
1,623,262	-		DDA3937_RS07200	0.52	-0.7
1,623,264	+		DDA3937_RS07200	0.52	-2.6
1,623,264	+		DDA3937_RS07200	0.52	+1.3
1,623,264	+		DDA3937_RS07200	0.52	-2.4
1,623,264	+		DDA3937_RS07200	0.52	-0.9
1,623,264	+		DDA3937_RS07200	0.52	-0.3
1,623,264	+		DDA3937_RS07200	0.52	-0.3
1,623,265	-		DDA3937_RS07200	0.52	-1.3
1,623,265	-		DDA3937_RS07200	0.52	-1.7
1,623,265	-		DDA3937_RS07200	0.52	-2.1
1,623,330	+		DDA3937_RS07200	0.57	-1.6
1,623,331	-		DDA3937_RS07200	0.57	-1.0
1,623,331	-		DDA3937_RS07200	0.57	-0.3
1,623,331	-		DDA3937_RS07200	0.57	+0.6
1,623,445	+		DDA3937_RS07200	0.65	+1.9
1,623,446	-		DDA3937_RS07200	0.65	+0.9
1,623,527	+		DDA3937_RS07200	0.70	-0.3
1,623,528	-				+0.3
1,623,528	-		DDA3937_RS07200	0.71	+2.3
1,623,528	-		DDA3937_RS07200	0.71	+0.5
1,623,571	+		DDA3937_RS07200	0.74	-1.7
1,623,571	+		DDA3937_RS07200	0.74	-1.7
1,623,572	-		DDA3937_RS07200	0.74	-2.0
1,623,656	-		DDA3937_RS07200	0.79	-1.9
1,623,660	+		DDA3937_RS07200	0.80	-0.5
1,623,660	+		DDA3937_RS07200	0.80	+0.9
1,623,660	+		DDA3937_RS07200	0.80	-0.1
1,623,661	-		DDA3937_RS07200	0.80	+0.7
1,623,661	-		DDA3937_RS07200	0.80	-3.7
1,623,661	-		DDA3937_RS07200	0.80	+1.3
1,623,661	-		DDA3937_RS07200	0.80	-2.7
1,623,662	+		DDA3937_RS07200	0.80	+1.5
1,623,697	+		DDA3937_RS07200	0.82	-1.5
1,623,737	+		DDA3937_RS07200	0.85	-1.1
1,623,743	+		DDA3937_RS07200	0.86	+0.0
1,623,743	+		DDA3937_RS07200	0.86	-1.4
1,623,744	-		DDA3937_RS07200	0.86	+1.1
1,623,744	-		DDA3937_RS07200	0.86	+0.2
1,623,885	+				+0.5
1,623,885	+				-3.1
1,623,886	-				-0.7
1,623,886	-				+3.9
1,623,944	+				-0.4
1,623,945	-				+1.5
1,623,945	-				+0.8
1,624,067	+		DDA3937_RS07205	0.15	-1.8
1,624,067	+		DDA3937_RS07205	0.15	-0.3
1,624,068	-		DDA3937_RS07205	0.15	-2.0
1,624,096	+		DDA3937_RS07205	0.19	+0.5
1,624,278	-		DDA3937_RS07205	0.44	-1.7
1,624,278	-		DDA3937_RS07205	0.44	-2.4
1,624,278	-		DDA3937_RS07205	0.44	-1.3
1,624,418	+		DDA3937_RS07205	0.64	-1.3
1,624,418	+		DDA3937_RS07205	0.64	-1.7
1,624,419	-		DDA3937_RS07205	0.64	+0.4
1,624,458	+		DDA3937_RS07205	0.69	+0.3
1,624,526	+		DDA3937_RS07205	0.79	-1.4
1,624,526	+		DDA3937_RS07205	0.79	-2.7
1,624,527	-		DDA3937_RS07205	0.79	-0.3
1,624,527	-		DDA3937_RS07205	0.79	+2.0
1,624,686	-				+0.1
1,624,686	-				+5.0
1,624,686	-				-2.1
1,624,686	-				-1.0
1,624,699	+				+0.1
1,624,700	-				+2.5
1,624,715	-				+1.4
1,624,739	-				-0.2
1,624,745	-				-1.4
1,624,760	-				+0.3
1,624,865	+				-2.6
1,624,911	+				+1.2
1,624,912	-				-1.7
1,624,912	-				+0.7
1,624,912	-				-1.3
1,624,912	-				-1.0
1,624,915	-				+0.4
1,624,915	-				-1.2
1,624,918	+				-2.0
1,624,918	+				-0.7
1,624,919	-				-1.8
1,624,919	-				+0.9
1,624,919	-				+0.9
1,624,919	-				-0.4
1,624,924	+				+0.3
1,624,925	-				-0.4
1,624,944	+		DDA3937_RS07210	0.12	+0.3
1,624,944	+		DDA3937_RS07210	0.12	+1.3
1,624,944	+		DDA3937_RS07210	0.12	+0.0
1,625,010	+		DDA3937_RS07210	0.17	-0.5
1,625,011	-		DDA3937_RS07210	0.17	+0.8
1,625,011	-		DDA3937_RS07210	0.17	-1.3
1,625,049	+		DDA3937_RS07210	0.21	-0.9
1,625,050	-		DDA3937_RS07210	0.21	-1.3
1,625,077	+		DDA3937_RS07210	0.23	-1.7
1,625,110	-		DDA3937_RS07210	0.26	+0.5
1,625,113	+		DDA3937_RS07210	0.26	+1.4
1,625,114	-		DDA3937_RS07210	0.26	+0.2
1,625,114	-		DDA3937_RS07210	0.26	-1.0
1,625,114	-		DDA3937_RS07210	0.26	+0.8
1,625,114	-		DDA3937_RS07210	0.26	+1.1
1,625,114	-		DDA3937_RS07210	0.26	+1.7
1,625,135	-		DDA3937_RS07210	0.28	+0.5
1,625,135	-		DDA3937_RS07210	0.28	+1.2
1,625,135	-		DDA3937_RS07210	0.28	-1.2
1,625,147	-		DDA3937_RS07210	0.29	-1.5
1,625,162	-		DDA3937_RS07210	0.31	+0.7
1,625,162	-		DDA3937_RS07210	0.31	+0.4
1,625,214	+		DDA3937_RS07210	0.35	+0.9
1,625,266	+		DDA3937_RS07210	0.40	-1.3
1,625,267	-		DDA3937_RS07210	0.40	-2.6
1,625,267	-		DDA3937_RS07210	0.40	+0.4
1,625,267	-		DDA3937_RS07210	0.40	-0.1
1,625,274	+		DDA3937_RS07210	0.40	-1.1
1,625,275	-		DDA3937_RS07210	0.40	-0.1
1,625,311	+		DDA3937_RS07210	0.44	+0.5
1,625,312	-				+0.3
1,625,312	-		DDA3937_RS07210	0.44	-0.5
1,625,409	+		DDA3937_RS07210	0.52	+1.5
1,625,409	+		DDA3937_RS07210	0.52	-2.1
1,625,410	-		DDA3937_RS07210	0.52	+0.3
1,625,410	-		DDA3937_RS07210	0.52	-0.3
1,625,559	+		DDA3937_RS07210	0.65	-0.3
1,625,560	-		DDA3937_RS07210	0.65	-0.4
1,625,560	-		DDA3937_RS07210	0.65	-2.4
1,625,560	-		DDA3937_RS07210	0.65	-1.5
1,625,601	+		DDA3937_RS07210	0.69	-0.7
1,625,601	+		DDA3937_RS07210	0.69	+0.7
1,625,601	+		DDA3937_RS07210	0.69	-1.8
1,625,601	+		DDA3937_RS07210	0.69	-1.5
1,625,601	+		DDA3937_RS07210	0.69	-1.3
1,625,602	-		DDA3937_RS07210	0.69	-2.3
1,625,602	-		DDA3937_RS07210	0.69	-1.3