Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06130

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,376,059	+				+0.2
1,376,059	+				+0.7
1,376,092	+				+0.7
1,376,092	+				-0.9
1,376,092	+				-1.7
1,376,092	+				-0.3
1,376,099	+				-0.2
1,376,100	-				+0.3
1,376,161	+		DDA3937_RS06125	0.12	-2.3
1,376,161	+		DDA3937_RS06125	0.12	-2.4
1,376,254	+		DDA3937_RS06125	0.36	-0.4
1,376,255	-		DDA3937_RS06125	0.37	+0.3
1,376,338	-		DDA3937_RS06125	0.58	+1.4
1,376,338	-				-0.2
1,376,338	-		DDA3937_RS06125	0.58	+0.7
1,376,338	-		DDA3937_RS06125	0.58	-2.9
1,376,411	+		DDA3937_RS06125	0.77	+0.0
1,376,412	-		DDA3937_RS06125	0.78	+1.8
1,376,416	+		DDA3937_RS06125	0.79	-0.8
1,376,417	-		DDA3937_RS06125	0.79	+1.1
1,376,417	-		DDA3937_RS06125	0.79	+1.0
1,376,420	-		DDA3937_RS06125	0.80	-2.1
1,376,483	+				-1.9
1,376,483	+				-0.2
1,376,483	+				-0.6
1,376,488	+				+1.9
1,376,488	+				-0.2
1,376,488	+				+1.6
1,376,488	+				+1.5
1,376,488	+				-1.4
1,376,489	-				-1.0
1,376,489	-				-4.5
1,376,489	-				-2.4
1,376,489	-				-0.5
1,376,489	-				-0.9
1,376,491	+				-0.0
1,376,491	+				-1.5
1,376,492	-				-1.2
1,376,493	+				-1.5
1,376,493	+				-2.1
1,376,493	+				+1.7
1,376,493	+				+0.3
1,376,493	+				-1.9
1,376,493	+				-0.3
1,376,493	+				-0.6
1,376,493	+				-0.9
1,376,493	+				-0.9
1,376,493	+				-0.7
1,376,493	+				-1.8
1,376,493	+				+0.1
1,376,493	+				-1.9
1,376,493	+				-0.2
1,376,493	+				-2.9
1,376,493	+				+0.4
1,376,493	+				+4.4
1,376,493	+				+1.3
1,376,493	+				-1.9
1,376,493	+				-1.2
1,376,493	+				-1.2
1,376,493	+				-0.9
1,376,493	+				+0.6
1,376,493	+				-1.0
1,376,493	+				-1.8
1,376,493	+				-2.6
1,376,494	-				+0.4
1,376,494	-				+0.9
1,376,494	-				+1.4
1,376,494	-				-1.2
1,376,494	-				-2.4
1,376,494	-				-0.1
1,376,494	-				-2.1
1,376,494	-				-2.3
1,376,494	-				+0.1
1,376,494	-				+0.8
1,376,494	-				-0.3
1,376,494	-				-0.2
1,376,494	-				-2.3
1,376,494	-				-0.6
1,376,494	-				-1.5
1,376,494	-				+1.7
1,376,494	-				-1.3
1,376,494	-				+0.5
1,376,494	-				-0.6
1,376,494	-				+0.1
1,376,494	-				-0.6
1,376,494	-				-2.9
1,376,494	-				-0.5
1,376,495	-				-0.1
1,376,497	+				-1.7
1,376,497	+				-1.7
1,376,497	+				+0.5
1,376,497	+				+0.1
1,376,497	+				-0.9
1,376,497	+				-2.1
1,376,498	-				-0.2
1,376,498	-				-0.5
1,376,498	-				+0.1
1,376,498	-				-1.2
1,376,498	-				+1.7
1,376,498	-				+0.4
1,376,498	-				+0.1
1,376,498	-				-0.9
1,376,498	-				-3.3
1,376,498	-				+2.3
1,376,520	-				+2.0
1,376,520	-				+1.8
1,376,622	+				-3.6
1,376,630	-				+1.2
1,376,630	-				-2.3
1,376,652	+				-0.9
1,376,676	+				+2.0
1,376,707	-				+0.9
1,376,772	-				-0.9
1,376,934	+		DDA3937_RS06130	0.29	-2.3
1,376,985	+		DDA3937_RS06130	0.35	-2.9
1,376,986	-		DDA3937_RS06130	0.35	-1.1
1,376,986	-		DDA3937_RS06130	0.35	-2.2
1,376,986	-		DDA3937_RS06130	0.35	-1.8
1,376,988	+		DDA3937_RS06130	0.36	-0.9
1,376,988	+		DDA3937_RS06130	0.36	+2.0
1,376,988	+		DDA3937_RS06130	0.36	+1.0
1,376,988	+		DDA3937_RS06130	0.36	-2.9
1,376,989	-		DDA3937_RS06130	0.36	+0.3
1,377,029	-		DDA3937_RS06130	0.41	-0.3
1,377,046	+		DDA3937_RS06130	0.43	-0.2
1,377,046	+		DDA3937_RS06130	0.43	+0.5
1,377,046	+		DDA3937_RS06130	0.43	-2.9
1,377,046	+		DDA3937_RS06130	0.43	+0.7
1,377,047	-		DDA3937_RS06130	0.43	-0.9
1,377,047	-		DDA3937_RS06130	0.43	-1.4
1,377,047	-		DDA3937_RS06130	0.43	-1.6
1,377,047	-		DDA3937_RS06130	0.43	-0.9
1,377,047	-		DDA3937_RS06130	0.43	-1.5
1,377,047	-		DDA3937_RS06130	0.43	-0.8
1,377,148	+		DDA3937_RS06130	0.56	+0.3
1,377,148	+		DDA3937_RS06130	0.56	-3.5
1,377,228	-		DDA3937_RS06130	0.66	-2.1
1,377,288	+		DDA3937_RS06130	0.74	+0.6
1,377,289	-		DDA3937_RS06130	0.74	-1.2
1,377,289	-		DDA3937_RS06130	0.74	-0.1
1,377,295	+		DDA3937_RS06130	0.75	-0.1
1,377,296	-		DDA3937_RS06130	0.75	-1.3
1,377,319	-		DDA3937_RS06130	0.78	+1.1
1,377,330	+		DDA3937_RS06130	0.79	+0.3
1,377,339	+		DDA3937_RS06130	0.80	-2.4
1,377,339	+		DDA3937_RS06130	0.80	+0.6
1,377,339	+		DDA3937_RS06130	0.80	-0.9
1,377,339	+		DDA3937_RS06130	0.80	-1.0
1,377,340	-		DDA3937_RS06130	0.80	-0.3
1,377,340	-		DDA3937_RS06130	0.80	+0.5
1,377,340	-		DDA3937_RS06130	0.80	+0.1
1,377,340	-		DDA3937_RS06130	0.80	-2.6
1,377,340	-		DDA3937_RS06130	0.80	-2.8
1,377,340	-		DDA3937_RS06130	0.80	-0.9
1,377,340	-		DDA3937_RS06130	0.80	-2.3
1,377,340	-		DDA3937_RS06130	0.80	-1.4
1,377,426	+				-2.4
1,377,426	+				-1.2
1,377,449	+				-2.6
1,377,450	-				-1.4
1,377,486	-				-1.4
1,377,488	+				-2.3
1,377,488	+				-1.1
1,377,488	+				+1.5
1,377,488	+				-0.9
1,377,488	+				+1.2
1,377,489	-				+0.7
1,377,547	+				+0.7
1,377,604	-				-1.2
1,377,604	-				+0.9
1,377,605	+				+1.6
1,377,605	+				-0.9
1,377,605	+				-2.7
1,377,606	-				-1.7
1,377,606	-				-2.9
1,377,606	-				+0.6
1,377,641	+				+2.6
1,377,641	+				+0.7
1,377,641	+				-3.0
1,377,641	+				-2.3
1,377,642	-				-0.8
1,377,642	-				-1.7
1,377,642	-				-0.0
1,377,642	-				-0.8
1,377,642	-				-3.3
1,377,645	+				-0.6
1,377,645	+				-1.2
1,377,645	+				-0.6
1,377,645	+				+0.5
1,377,645	+				-0.6
1,377,645	+				-1.2
1,377,645	+				-0.3
1,377,645	+				+1.7
1,377,645	+				-0.1
1,377,645	+				+1.5
1,377,646	-				-1.2
1,377,646	-				-0.4
1,377,646	-				-2.9
1,377,646	-				-0.9
1,377,646	-				-0.0
1,377,646	-				-0.8
1,377,646	-				+0.6
1,377,646	-				-1.0
1,377,646	-				-0.2
1,377,649	+				+0.1
1,377,649	+				+1.2
1,377,649	+				-2.1
1,377,649	+				+0.8
1,377,649	+				-1.2
1,377,649	+				-0.4
1,377,650	-				-1.2
1,377,650	-				-1.7
1,377,650	-				-0.2
1,377,650	-				+1.2
1,377,650	-				-0.7
1,377,650	-				-0.2
1,377,665	-				-0.2
1,377,678	+		DDA3937_RS06135	0.13	+1.4
1,377,678	+		DDA3937_RS06135	0.13	-0.9
1,377,678	+		DDA3937_RS06135	0.13	-2.9
1,377,718	+		DDA3937_RS06135	0.32	+0.1
1,377,719	-		DDA3937_RS06135	0.33	-0.2
1,377,775	+		DDA3937_RS06135	0.60	+1.9
1,377,776	-		DDA3937_RS06135	0.60	+2.3
1,377,857	+				+2.3
1,377,857	+				-3.1
1,377,858	-				+0.5
1,377,863	+				+0.6
1,377,863	+				+0.4
1,377,934	+				+0.9
1,377,935	-				-1.8
1,377,935	-				+0.1
1,377,938	+				+0.7
1,377,938	+				-1.2
1,377,938	+				+2.7
1,377,939	-				-0.6
1,377,966	+				-1.6