Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05830

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,305,692	+		DDA3937_RS05825	0.58	-0.9
1,305,693	-		DDA3937_RS05825	0.58	-1.4
1,305,693	-		DDA3937_RS05825	0.58	-0.4
1,305,693	-		DDA3937_RS05825	0.58	-2.9
1,305,722	+		DDA3937_RS05825	0.60	-0.8
1,305,763	+				+1.4
1,305,763	+		DDA3937_RS05825	0.62	-2.7
1,305,764	-		DDA3937_RS05825	0.63	-0.9
1,305,764	-		DDA3937_RS05825	0.63	-1.4
1,305,815	+		DDA3937_RS05825	0.66	+1.0
1,305,816	-		DDA3937_RS05825	0.66	+0.7
1,305,863	+		DDA3937_RS05825	0.69	+0.1
1,305,864	-		DDA3937_RS05825	0.69	-1.3
1,305,864	-		DDA3937_RS05825	0.69	-0.9
1,305,864	-		DDA3937_RS05825	0.69	+0.9
1,305,864	-		DDA3937_RS05825	0.69	-2.3
1,305,864	-		DDA3937_RS05825	0.69	-1.9
1,306,006	+		DDA3937_RS05825	0.78	-1.1
1,306,006	+		DDA3937_RS05825	0.78	+1.1
1,306,007	-		DDA3937_RS05825	0.78	-1.4
1,306,019	-		DDA3937_RS05825	0.79	-0.1
1,306,019	-		DDA3937_RS05825	0.79	-1.5
1,306,019	-		DDA3937_RS05825	0.79	-0.2
1,306,118	+		DDA3937_RS05825	0.85	-1.2
1,306,118	+		DDA3937_RS05825	0.85	-1.8
1,306,166	+		DDA3937_RS05825	0.88	-1.4
1,306,167	-		DDA3937_RS05825	0.88	-1.3
1,306,167	-		DDA3937_RS05825	0.88	-1.2
1,306,170	+		DDA3937_RS05825	0.88	-0.2
1,306,170	+		DDA3937_RS05825	0.88	-0.3
1,306,170	+		DDA3937_RS05825	0.88	-1.4
1,306,170	+		DDA3937_RS05825	0.88	-0.6
1,306,170	+		DDA3937_RS05825	0.88	+0.8
1,306,170	+		DDA3937_RS05825	0.88	+2.2
1,306,170	+		DDA3937_RS05825	0.88	+1.6
1,306,171	-		DDA3937_RS05825	0.88	-0.6
1,306,171	-		DDA3937_RS05825	0.88	-3.2
1,306,171	-		DDA3937_RS05825	0.88	-1.2
1,306,172	+		DDA3937_RS05825	0.88	+1.1
1,306,172	+		DDA3937_RS05825	0.88	-0.4
1,306,173	-		DDA3937_RS05825	0.88	+0.0
1,306,296	+				+0.4
1,306,305	-				+1.1
1,306,322	+				-2.2
1,306,344	-				+1.1
1,306,367	+				+0.6
1,306,367	+				-1.4
1,306,368	-				-1.2
1,306,384	-				-1.6
1,306,419	-				-1.7
1,306,434	+				+1.6
1,306,434	+				-2.5
1,306,435	-				-1.0
1,306,449	+				-2.4
1,306,495	+				-1.9
1,306,496	-				-3.5
1,306,658	+				+0.2
1,306,658	+				-1.4
1,306,658	+				+1.6
1,306,659	-				+1.3
1,306,878	+		DDA3937_RS05830	0.16	-1.4
1,306,878	+		DDA3937_RS05830	0.16	-1.8
1,306,878	+		DDA3937_RS05830	0.16	-0.1
1,306,878	+		DDA3937_RS05830	0.16	-0.2
1,306,879	-		DDA3937_RS05830	0.16	-2.2
1,306,879	-		DDA3937_RS05830	0.16	-2.4
1,306,879	-		DDA3937_RS05830	0.16	+0.0
1,306,969	-		DDA3937_RS05830	0.23	-0.6
1,307,133	-		DDA3937_RS05830	0.35	-1.0
1,307,166	+		DDA3937_RS05830	0.37	-2.6
1,307,276	+		DDA3937_RS05830	0.45	-0.2
1,307,276	+		DDA3937_RS05830	0.45	-0.3
1,307,279	+		DDA3937_RS05830	0.46	-0.9
1,307,279	+		DDA3937_RS05830	0.46	-1.9
1,307,279	+		DDA3937_RS05830	0.46	-0.4
1,307,279	+		DDA3937_RS05830	0.46	+2.0
1,307,279	+		DDA3937_RS05830	0.46	-0.7
1,307,280	-		DDA3937_RS05830	0.46	-1.3
1,307,312	+				-0.9
1,307,428	+		DDA3937_RS05830	0.56	+1.2
1,307,428	+		DDA3937_RS05830	0.56	+0.4
1,307,435	+		DDA3937_RS05830	0.57	+1.4
1,307,439	+		DDA3937_RS05830	0.57	-1.8
1,307,440	-		DDA3937_RS05830	0.57	-2.5
1,307,440	-		DDA3937_RS05830	0.57	-1.0
1,307,440	-		DDA3937_RS05830	0.57	+1.3
1,307,441	+		DDA3937_RS05830	0.57	+1.4
1,307,458	+		DDA3937_RS05830	0.59	-0.2
1,307,459	-		DDA3937_RS05830	0.59	-3.1
1,307,528	+		DDA3937_RS05830	0.64	+0.1
1,307,550	+		DDA3937_RS05830	0.65	-1.4
1,307,550	+		DDA3937_RS05830	0.65	-2.5
1,307,550	+		DDA3937_RS05830	0.65	-0.4
1,307,550	+		DDA3937_RS05830	0.65	-2.5
1,307,550	+		DDA3937_RS05830	0.65	+1.2
1,307,607	+		DDA3937_RS05830	0.69	+3.3
1,307,607	+		DDA3937_RS05830	0.69	+1.0
1,307,608	-		DDA3937_RS05830	0.70	-1.2
1,307,644	+		DDA3937_RS05830	0.72	+1.6
1,307,644	+		DDA3937_RS05830	0.72	-2.7
1,307,659	-		DDA3937_RS05830	0.73	-1.0
1,307,659	-		DDA3937_RS05830	0.73	+0.0
1,307,661	+		DDA3937_RS05830	0.73	+0.8
1,307,661	+		DDA3937_RS05830	0.73	+1.7
1,307,661	+		DDA3937_RS05830	0.73	+1.0
1,307,662	-		DDA3937_RS05830	0.73	-2.8
1,307,662	-		DDA3937_RS05830	0.73	-1.6
1,307,680	+		DDA3937_RS05830	0.75	+1.2
1,307,680	+		DDA3937_RS05830	0.75	-1.1
1,307,680	+		DDA3937_RS05830	0.75	-1.1
1,307,681	-		DDA3937_RS05830	0.75	+0.3
1,307,681	-		DDA3937_RS05830	0.75	-1.8
1,307,740	-		DDA3937_RS05830	0.79	-1.8
1,307,856	-		DDA3937_RS05830	0.88	-2.3
1,307,974	+				-1.9
1,307,975	-				+2.1
1,308,066	+				-2.3
1,308,066	+				+3.0
1,308,126	+				+0.4
1,308,167	+				+0.1
1,308,318	+		DDA3937_RS05835	0.39	+2.7
1,308,477	+		DDA3937_RS05835	0.72	-2.9
1,308,477	+		DDA3937_RS05835	0.72	-0.0
1,308,552	+		DDA3937_RS05835	0.88	-0.0
1,308,552	+		DDA3937_RS05835	0.88	-1.2
1,308,552	+		DDA3937_RS05835	0.88	+2.2
1,308,552	+		DDA3937_RS05835	0.88	+1.7
1,308,553	-		DDA3937_RS05835	0.88	+0.6
1,308,553	-		DDA3937_RS05835	0.88	+0.4
1,308,553	-		DDA3937_RS05835	0.88	+1.7
1,308,556	+		DDA3937_RS05835	0.89	+0.9
1,308,556	+		DDA3937_RS05835	0.89	+0.3
1,308,556	+		DDA3937_RS05835	0.89	+2.2
1,308,556	+		DDA3937_RS05835	0.89	-2.6
1,308,557	-		DDA3937_RS05835	0.89	+0.6
1,308,557	-		DDA3937_RS05835	0.89	+0.5
1,308,557	-		DDA3937_RS05835	0.89	-3.1
1,308,557	-		DDA3937_RS05835	0.89	-1.4
1,308,597	-				+0.3
1,308,610	+				+0.5
1,308,610	+				-1.6
1,308,610	+				+1.1
1,308,610	+				+1.7
1,308,611	-				+0.4
1,308,611	-				+1.2
1,308,611	-				-0.9
1,308,615	+				-3.7
1,308,615	+				+0.4
1,308,615	+				-2.1
1,308,615	+				+3.1
1,308,615	+				-1.1
1,308,616	-				-0.9
1,308,616	-				-1.8
1,308,616	-				+0.3
1,308,616	-				-1.6
1,308,616	-				-1.6
1,308,616	-				-2.3
1,308,642	+				-0.6
1,308,652	+				-2.1
1,308,652	+				-3.5
1,308,652	+				+0.9
1,308,652	+				-1.1
1,308,680	+				-0.9
1,308,680	+				-1.4
1,308,682	+				+2.5
1,308,683	-				+1.0
1,308,710	+		DDA3937_RS05840	0.10	-0.1
1,308,782	-		DDA3937_RS05840	0.19	-2.5
1,308,859	+		DDA3937_RS05840	0.28	-1.2
1,308,876	+		DDA3937_RS05840	0.31	+4.1
1,308,876	+		DDA3937_RS05840	0.31	-1.3
1,308,877	-		DDA3937_RS05840	0.31	+0.2
1,308,877	-		DDA3937_RS05840	0.31	-1.8
1,308,877	-		DDA3937_RS05840	0.31	-0.2
1,308,877	-		DDA3937_RS05840	0.31	+0.4
1,308,877	-		DDA3937_RS05840	0.31	+0.7
1,309,014	-		DDA3937_RS05840	0.47	-1.4
1,309,014	-		DDA3937_RS05840	0.47	+0.4