Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05675

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,267,272	+				+0.2
1,267,294	+				-1.1
1,267,295	-				-2.2
1,267,406	-				+0.5
1,267,461	-				+1.0
1,267,461	-				-2.4
1,267,469	-				-0.4
1,267,529	+		DDA3937_RS05670	0.17	-0.0
1,267,541	-		DDA3937_RS05670	0.19	-1.4
1,267,541	-		DDA3937_RS05670	0.19	-1.8
1,267,582	+		DDA3937_RS05670	0.25	-2.2
1,267,583	-		DDA3937_RS05670	0.25	+1.2
1,267,585	+		DDA3937_RS05670	0.25	+1.6
1,267,778	-				+0.8
1,267,806	-		DDA3937_RS05670	0.57	-1.2
1,267,806	-		DDA3937_RS05670	0.57	-1.8
1,267,827	-		DDA3937_RS05670	0.60	-1.1
1,267,827	-		DDA3937_RS05670	0.60	-1.2
1,267,871	+		DDA3937_RS05670	0.66	+0.5
1,267,871	+		DDA3937_RS05670	0.66	-1.4
1,267,890	-				-0.6
1,268,032	+		DDA3937_RS05670	0.89	-2.1
1,268,159	+				+0.4
1,268,159	+				+1.1
1,268,160	-				+0.4
1,268,160	-				-0.6
1,268,160	-				-0.8
1,268,160	-				-2.1
1,268,160	-				+1.9
1,268,160	-				+0.4
1,268,160	-				-1.2
1,268,172	-				-1.1
1,268,204	-				-2.2
1,268,269	+				-0.6
1,268,314	+				+0.2
1,268,314	+				-2.7
1,268,314	+				-1.6
1,268,314	+				-3.5
1,268,314	+				-0.5
1,268,315	-				+1.3
1,268,315	-				+0.4
1,268,315	-				+0.6
1,268,315	-				-2.2
1,268,315	-				+1.0
1,268,315	-				+0.5
1,268,317	+				+1.4
1,268,317	+				+0.4
1,268,317	+				-1.6
1,268,317	+				-1.2
1,268,317	+				+0.6
1,268,317	+				-2.9
1,268,318	-				-1.7
1,268,423	+		DDA3937_RS05675	0.18	+0.1
1,268,423	+		DDA3937_RS05675	0.18	+0.9
1,268,424	-		DDA3937_RS05675	0.18	-0.3
1,268,424	-		DDA3937_RS05675	0.18	-1.2
1,268,424	-		DDA3937_RS05675	0.18	-3.5
1,268,534	+		DDA3937_RS05675	0.29	+0.7
1,268,626	+		DDA3937_RS05675	0.37	-1.8
1,268,627	-		DDA3937_RS05675	0.38	-1.8
1,268,627	-		DDA3937_RS05675	0.38	+1.8
1,268,650	-		DDA3937_RS05675	0.40	-0.6
1,268,650	-		DDA3937_RS05675	0.40	-0.4
1,268,650	-		DDA3937_RS05675	0.40	+0.7
1,268,650	-		DDA3937_RS05675	0.40	+0.4
1,268,650	-		DDA3937_RS05675	0.40	-2.1
1,268,667	-		DDA3937_RS05675	0.41	+0.7
1,268,679	-		DDA3937_RS05675	0.42	-2.3
1,268,679	-		DDA3937_RS05675	0.42	-3.8
1,268,679	-		DDA3937_RS05675	0.42	-0.9
1,268,679	-		DDA3937_RS05675	0.42	+1.1
1,268,680	+		DDA3937_RS05675	0.43	-0.4
1,268,681	-		DDA3937_RS05675	0.43	-2.1
1,268,689	+		DDA3937_RS05675	0.43	-1.6
1,268,689	+		DDA3937_RS05675	0.43	-2.8
1,268,740	+		DDA3937_RS05675	0.48	-3.3
1,268,740	+		DDA3937_RS05675	0.48	+4.1
1,268,740	+		DDA3937_RS05675	0.48	-1.4
1,268,741	-		DDA3937_RS05675	0.48	-0.6
1,268,741	-		DDA3937_RS05675	0.48	+0.4
1,268,741	-		DDA3937_RS05675	0.48	+0.3
1,268,741	-		DDA3937_RS05675	0.48	+0.1
1,268,741	-		DDA3937_RS05675	0.48	+1.6
1,268,780	-		DDA3937_RS05675	0.52	+0.4
1,268,834	-		DDA3937_RS05675	0.57	-1.4
1,268,834	-				+0.4
1,268,837	+		DDA3937_RS05675	0.57	-1.6
1,268,837	+		DDA3937_RS05675	0.57	+1.3
1,268,837	+		DDA3937_RS05675	0.57	-1.0
1,268,838	-		DDA3937_RS05675	0.58	+0.4
1,268,838	-		DDA3937_RS05675	0.58	-1.2
1,268,838	-		DDA3937_RS05675	0.58	-2.7
1,268,851	+		DDA3937_RS05675	0.59	-1.4
1,268,851	+		DDA3937_RS05675	0.59	+0.2
1,268,851	+		DDA3937_RS05675	0.59	-1.0
1,268,851	+		DDA3937_RS05675	0.59	-2.8
1,268,851	+		DDA3937_RS05675	0.59	+0.2
1,268,851	+		DDA3937_RS05675	0.59	-2.1
1,268,851	+		DDA3937_RS05675	0.59	+1.1
1,268,852	-		DDA3937_RS05675	0.59	+0.6
1,268,852	-		DDA3937_RS05675	0.59	-0.9
1,268,852	-		DDA3937_RS05675	0.59	-1.8
1,268,852	-				+2.8
1,268,852	-		DDA3937_RS05675	0.59	+0.9
1,268,852	-		DDA3937_RS05675	0.59	+2.4
1,268,852	-		DDA3937_RS05675	0.59	+1.9
1,268,852	-		DDA3937_RS05675	0.59	-1.3
1,268,893	+		DDA3937_RS05675	0.63	+1.5
1,268,893	+		DDA3937_RS05675	0.63	+0.5
1,268,935	+		DDA3937_RS05675	0.67	-0.6
1,268,936	-		DDA3937_RS05675	0.67	-2.1
1,269,020	-		DDA3937_RS05675	0.75	-0.3
1,269,020	-		DDA3937_RS05675	0.75	-0.2
1,269,020	-		DDA3937_RS05675	0.75	-0.9
1,269,100	+		DDA3937_RS05675	0.82	-1.2
1,269,170	-		DDA3937_RS05675	0.89	+0.8
1,269,176	-		DDA3937_RS05675	0.90	+0.2
1,269,176	-		DDA3937_RS05675	0.90	+1.0
1,269,176	-		DDA3937_RS05675	0.90	-2.5
1,269,306	+				-1.4
1,269,313	+				+2.0
1,269,313	+				+3.2
1,269,313	+				-0.2
1,269,314	-				-0.9
1,269,328	-				+1.4
1,269,434	+				-2.2
1,269,435	-				+0.2
1,269,435	-				-0.7
1,269,435	-				+0.1
1,269,451	+				+0.4
1,269,464	+		DDA3937_RS05680	0.11	+0.5
1,269,464	+		DDA3937_RS05680	0.11	+1.4
1,269,464	+		DDA3937_RS05680	0.11	+1.6
1,269,465	-		DDA3937_RS05680	0.11	-2.5
1,269,465	-		DDA3937_RS05680	0.11	+0.4
1,269,470	-		DDA3937_RS05680	0.12	-1.4
1,269,470	-		DDA3937_RS05680	0.12	+0.9
1,269,510	-		DDA3937_RS05680	0.21	+0.4
1,269,553	-		DDA3937_RS05680	0.30	-1.9
1,269,553	-		DDA3937_RS05680	0.30	-1.1
1,269,557	+		DDA3937_RS05680	0.31	+1.1
1,269,557	+		DDA3937_RS05680	0.31	-0.5
1,269,557	+		DDA3937_RS05680	0.31	-2.9
1,269,557	+		DDA3937_RS05680	0.31	+1.2
1,269,557	+		DDA3937_RS05680	0.31	-0.9
1,269,557	+		DDA3937_RS05680	0.31	-2.3
1,269,557	+		DDA3937_RS05680	0.31	-1.4
1,269,557	+		DDA3937_RS05680	0.31	+0.1
1,269,557	+		DDA3937_RS05680	0.31	+2.4
1,269,558	-		DDA3937_RS05680	0.31	-1.6
1,269,558	-		DDA3937_RS05680	0.31	-2.3
1,269,558	-		DDA3937_RS05680	0.31	+3.2
1,269,558	-		DDA3937_RS05680	0.31	+0.8
1,269,558	-		DDA3937_RS05680	0.31	+1.2
1,269,558	-		DDA3937_RS05680	0.31	-0.8
1,269,616	+		DDA3937_RS05680	0.44	+1.9
1,269,616	+		DDA3937_RS05680	0.44	+2.6
1,269,617	-		DDA3937_RS05680	0.44	-1.0
1,269,617	-		DDA3937_RS05680	0.44	+1.7
1,269,617	-		DDA3937_RS05680	0.44	-1.6
1,269,619	+		DDA3937_RS05680	0.44	-1.8
1,269,620	-		DDA3937_RS05680	0.45	-2.9
1,269,720	+		DDA3937_RS05680	0.66	+0.7
1,269,720	+		DDA3937_RS05680	0.66	-2.2
1,269,721	-		DDA3937_RS05680	0.66	-0.3
1,269,721	-		DDA3937_RS05680	0.66	-2.2
1,269,726	+		DDA3937_RS05680	0.68	-0.2
1,269,727	-		DDA3937_RS05680	0.68	-2.6
1,269,762	+		DDA3937_RS05680	0.75	-0.2
1,269,762	+		DDA3937_RS05680	0.75	-2.0
1,269,763	-		DDA3937_RS05680	0.76	-1.9
1,269,763	-		DDA3937_RS05680	0.76	-1.9
1,269,763	-		DDA3937_RS05680	0.76	+2.2
1,269,889	+				-2.1
1,269,890	-				-0.7
1,269,896	+				-1.4
1,269,896	+				+0.5
1,269,896	+				-1.9
1,269,896	+				+0.6
1,269,896	+				+0.4
1,269,896	+				-2.2
1,269,896	+				+1.8
1,269,897	-				-2.5
1,269,897	-				-0.2
1,269,897	-				+0.4
1,269,897	-				-1.0
1,269,897	-				-0.9
1,269,897	-				-0.9
1,269,901	-				-0.9
1,269,901	-				-0.6
1,269,905	+				+0.4
1,269,906	-				-3.0
1,269,906	-				-0.6
1,269,906	-				-2.2
1,269,906	-				-1.4
1,269,906	-				-1.4
1,269,914	+				-1.6
1,269,924	+				+0.4
1,269,936	+				+0.6
1,269,980	+				-1.9
1,269,981	-				+2.5
1,270,004	+				-0.9
1,270,120	-				-0.2
1,270,163	+		DDA3937_RS05685	0.12	-1.7
1,270,163	+		DDA3937_RS05685	0.12	-0.4
1,270,242	-		DDA3937_RS05685	0.16	-2.5