Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04935

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,105,814	+		DDA3937_RS04925	0.63	+3.7
1,105,814	+		DDA3937_RS04925	0.63	-3.2
1,105,814	+		DDA3937_RS04925	0.63	-0.7
1,105,815	-		DDA3937_RS04925	0.63	-0.3
1,105,815	-		DDA3937_RS04925	0.63	-1.6
1,105,816	+		DDA3937_RS04925	0.63	+1.3
1,105,816	+		DDA3937_RS04925	0.63	-3.2
1,105,816	+		DDA3937_RS04925	0.63	-0.7
1,105,816	+		DDA3937_RS04925	0.63	-2.9
1,105,817	-		DDA3937_RS04925	0.63	-2.8
1,105,817	-		DDA3937_RS04925	0.63	+0.3
1,105,817	-		DDA3937_RS04925	0.63	+0.7
1,105,817	-		DDA3937_RS04925	0.63	-0.1
1,105,817	-		DDA3937_RS04925	0.63	-0.6
1,105,817	-		DDA3937_RS04925	0.63	+2.8
1,105,817	-				+0.4
1,105,826	+		DDA3937_RS04925	0.64	-1.2
1,105,826	+		DDA3937_RS04925	0.64	+0.2
1,105,826	+		DDA3937_RS04925	0.64	+0.3
1,105,827	-		DDA3937_RS04925	0.64	+0.2
1,105,827	-		DDA3937_RS04925	0.64	+0.2
1,105,995	+		DDA3937_RS04925	0.80	-2.5
1,105,996	-		DDA3937_RS04925	0.80	+0.7
1,105,997	+				+1.4
1,105,997	+		DDA3937_RS04925	0.80	-1.9
1,105,997	+		DDA3937_RS04925	0.80	-2.1
1,105,997	+		DDA3937_RS04925	0.80	+1.7
1,105,997	+				+3.3
1,105,997	+		DDA3937_RS04925	0.80	-0.3
1,105,997	+		DDA3937_RS04925	0.80	+0.2
1,105,998	-		DDA3937_RS04925	0.81	-0.8
1,105,998	-		DDA3937_RS04925	0.81	-0.9
1,105,998	-		DDA3937_RS04925	0.81	-0.9
1,105,998	-		DDA3937_RS04925	0.81	-1.1
1,106,068	-		DDA3937_RS04925	0.87	-0.6
1,106,158	-				+2.9
1,106,158	-				-0.0
1,106,184	+				-0.8
1,106,184	+				+0.4
1,106,184	+				+0.8
1,106,184	+				-0.1
1,106,185	-				-1.4
1,106,192	+				-1.9
1,106,192	+				-0.1
1,106,192	+				-1.4
1,106,192	+				-1.1
1,106,192	+				+0.2
1,106,192	+				+0.7
1,106,193	-				+3.8
1,106,193	-				+0.7
1,106,193	-				-1.4
1,106,214	+				+0.2
1,106,248	+				-1.9
1,106,249	-				+1.1
1,106,258	+				+0.4
1,106,258	+				-2.5
1,106,258	+				-2.7
1,106,258	+				-1.2
1,106,259	-				-0.9
1,106,260	+				+0.3
1,106,260	+				-0.6
1,106,261	-				+0.4
1,106,405	+				+1.9
1,106,414	+				-1.4
1,106,478	+		DDA3937_RS04930	0.30	-0.7
1,106,478	+		DDA3937_RS04930	0.30	-1.4
1,106,478	+		DDA3937_RS04930	0.30	-2.1
1,106,479	+		DDA3937_RS04930	0.30	-2.5
1,106,480	+		DDA3937_RS04930	0.31	-0.2
1,106,480	+		DDA3937_RS04930	0.31	+3.3
1,106,480	+		DDA3937_RS04930	0.31	-0.1
1,106,481	-		DDA3937_RS04930	0.31	-2.4
1,106,561	+		DDA3937_RS04930	0.68	+0.5
1,106,561	+		DDA3937_RS04930	0.68	+1.4
1,106,561	+		DDA3937_RS04930	0.68	+0.9
1,106,561	+		DDA3937_RS04930	0.68	-1.5
1,106,561	+		DDA3937_RS04930	0.68	-0.3
1,106,562	-		DDA3937_RS04930	0.68	-1.2
1,106,562	-		DDA3937_RS04930	0.68	+2.1
1,106,562	-		DDA3937_RS04930	0.68	-0.6
1,106,562	-		DDA3937_RS04930	0.68	+3.4
1,106,640	+				+0.4
1,106,648	-				+1.2
1,106,680	+				+0.3
1,106,681	-				-1.2
1,106,681	-				-2.1
1,106,713	-				-0.9
1,106,738	+				-0.8
1,106,738	+				+1.1
1,106,739	-				-2.9
1,106,739	-				-2.5
1,106,739	-				-1.3
1,106,739	-				-3.0
1,106,739	-				+0.5
1,106,787	-				-0.8
1,106,861	+		DDA3937_RS04935	0.11	+1.0
1,106,861	+		DDA3937_RS04935	0.11	+1.8
1,106,861	+		DDA3937_RS04935	0.11	+0.1
1,106,861	+		DDA3937_RS04935	0.11	+2.0
1,106,862	-		DDA3937_RS04935	0.11	+0.1
1,106,862	-		DDA3937_RS04935	0.11	-1.8
1,106,862	-				+0.1
1,106,862	-		DDA3937_RS04935	0.11	-1.2
1,106,862	-		DDA3937_RS04935	0.11	+1.4
1,106,862	-		DDA3937_RS04935	0.11	-0.4
1,106,867	+				-0.2
1,106,867	+		DDA3937_RS04935	0.11	+1.8
1,106,867	+		DDA3937_RS04935	0.11	-1.4
1,106,867	+		DDA3937_RS04935	0.11	-0.9
1,106,868	-		DDA3937_RS04935	0.12	-3.4
1,107,036	+		DDA3937_RS04935	0.35	+0.0
1,107,037	-		DDA3937_RS04935	0.35	+1.4
1,107,037	-		DDA3937_RS04935	0.35	-1.4
1,107,037	-		DDA3937_RS04935	0.35	+0.8
1,107,037	-		DDA3937_RS04935	0.35	+2.4
1,107,037	-		DDA3937_RS04935	0.35	+2.9
1,107,037	-		DDA3937_RS04935	0.35	+0.4
1,107,037	-		DDA3937_RS04935	0.35	+0.6
1,107,040	-		DDA3937_RS04935	0.36	+0.6
1,107,040	-				+0.4
1,107,108	+				+0.4
1,107,108	+		DDA3937_RS04935	0.45	-0.6
1,107,108	+		DDA3937_RS04935	0.45	-0.2
1,107,109	-		DDA3937_RS04935	0.45	+0.4
1,107,109	-		DDA3937_RS04935	0.45	-0.2
1,107,115	+		DDA3937_RS04935	0.46	+1.2
1,107,116	-		DDA3937_RS04935	0.46	-2.2
1,107,271	-		DDA3937_RS04935	0.68	-2.9
1,107,424	+		DDA3937_RS04935	0.89	-2.8
1,107,424	+		DDA3937_RS04935	0.89	-1.2
1,107,424	+		DDA3937_RS04935	0.89	-0.2
1,107,425	-		DDA3937_RS04935	0.89	-1.4
1,107,425	-		DDA3937_RS04935	0.89	+0.9
1,107,538	-				+0.9
1,107,575	+				-0.2
1,107,575	+				-0.2
1,107,575	+				+0.9
1,107,575	+				+0.3
1,107,576	-				-0.9
1,107,576	-				-0.6
1,107,576	-				+0.8
1,107,576	-				+1.9
1,107,601	+				+0.2
1,107,602	-				+0.9
1,107,602	-				-0.1
1,107,632	+				+0.8
1,107,632	+				-0.2
1,107,632	+				-0.9
1,107,632	+				+0.9
1,107,632	+				-0.1
1,107,632	+				-0.2
1,107,632	+				+2.1
1,107,632	+				-0.1
1,107,633	-				-2.3
1,107,633	-				-1.2
1,107,633	-				-1.2
1,107,633	-				-2.5
1,107,633	-				-1.8
1,107,633	-				+0.8
1,107,635	+				+1.6
1,107,825	+		DDA3937_RS04940	0.33	-2.1
1,107,826	-		DDA3937_RS04940	0.33	+1.5
1,107,859	-		DDA3937_RS04940	0.38	-0.6
1,107,997	-		DDA3937_RS04940	0.58	-3.6
1,107,997	-		DDA3937_RS04940	0.58	-0.0
1,107,997	-		DDA3937_RS04940	0.58	+1.0
1,108,065	+		DDA3937_RS04940	0.68	+0.0
1,108,065	+		DDA3937_RS04940	0.68	-1.6
1,108,065	+		DDA3937_RS04940	0.68	-0.9
1,108,065	+		DDA3937_RS04940	0.68	+1.6
1,108,331	-				-0.8
1,108,484	+				-1.2
1,108,484	+				+1.4
1,108,485	-				-1.7
1,108,485	-				+1.2