Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04355 and DDA3937_RS04360 are separated by 504 nucleotides DDA3937_RS04360 and DDA3937_RS04365 overlap by 4 nucleotides
DDA3937_RS04355: DDA3937_RS04355 - NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase, at 956,725 to 959,004
_RS04355
DDA3937_RS04360: DDA3937_RS04360 - YaiI/YqxD family protein, at 959,509 to 959,958
_RS04360
DDA3937_RS04365: DDA3937_RS04365 - oxygen-dependent coproporphyrinogen oxidase, at 959,955 to 960,893
_RS04365
Position (kb) 959
960 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 958.519 kb on + strand, within DDA3937_RS04355 at 958.519 kb on + strand, within DDA3937_RS04355 at 958.519 kb on + strand, within DDA3937_RS04355 at 958.520 kb on - strand, within DDA3937_RS04355 at 958.520 kb on - strand, within DDA3937_RS04355 at 958.520 kb on - strand, within DDA3937_RS04355 at 958.520 kb on - strand, within DDA3937_RS04355 at 958.520 kb on - strand, within DDA3937_RS04355 at 958.520 kb on - strand, within DDA3937_RS04355 at 958.520 kb on - strand, within DDA3937_RS04355 at 958.843 kb on + strand at 958.844 kb on - strand at 958.844 kb on - strand at 958.844 kb on - strand at 958.917 kb on - strand at 959.002 kb on + strand at 959.002 kb on + strand at 959.002 kb on + strand at 959.003 kb on - strand at 959.003 kb on - strand at 959.059 kb on - strand at 959.059 kb on - strand at 959.077 kb on - strand at 959.079 kb on - strand at 959.079 kb on - strand at 959.079 kb on - strand at 959.079 kb on - strand at 959.079 kb on - strand at 959.452 kb on + strand at 959.597 kb on - strand, within DDA3937_RS04360 at 959.616 kb on + strand, within DDA3937_RS04360 at 959.616 kb on + strand, within DDA3937_RS04360 at 959.617 kb on - strand, within DDA3937_RS04360 at 959.617 kb on - strand, within DDA3937_RS04360 at 959.655 kb on + strand, within DDA3937_RS04360 at 959.656 kb on - strand, within DDA3937_RS04360 at 959.666 kb on + strand, within DDA3937_RS04360 at 959.788 kb on + strand, within DDA3937_RS04360 at 959.789 kb on - strand, within DDA3937_RS04360 at 959.979 kb on - strand at 960.894 kb on - strand at 960.894 kb on - strand at 960.894 kb on - strand at 960.894 kb on - strand at 960.946 kb on + strand at 960.946 kb on + strand at 960.947 kb on - strand at 960.947 kb on - strand at 960.952 kb on + strand at 960.952 kb on + strand at 960.952 kb on + strand at 960.952 kb on + strand at 960.952 kb on + strand at 960.953 kb on - strand at 960.953 kb on - strand at 960.953 kb on - strand at 960.953 kb on - strand at 960.953 kb on - strand at 960.953 kb on - strand at 960.953 kb on - strand at 960.953 kb on - strand at 960.953 kb on - strand at 960.955 kb on + strand at 960.955 kb on + strand at 960.955 kb on + strand at 960.955 kb on + strand at 960.955 kb on + strand at 960.955 kb on + strand at 960.956 kb on - strand at 960.956 kb on - strand at 960.957 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 958,519 + DDA3937_RS04355 0.79 -1.4 958,519 + DDA3937_RS04355 0.79 -1.2 958,519 + DDA3937_RS04355 0.79 +0.8 958,520 - DDA3937_RS04355 0.79 +1.2 958,520 - DDA3937_RS04355 0.79 -0.2 958,520 - DDA3937_RS04355 0.79 +0.1 958,520 - DDA3937_RS04355 0.79 -2.7 958,520 - DDA3937_RS04355 0.79 -1.4 958,520 - DDA3937_RS04355 0.79 +0.5 958,520 - DDA3937_RS04355 0.79 +0.1 958,843 + +5.0 958,844 - -0.6 958,844 - -2.0 958,844 - +3.2 958,917 - +2.6 959,002 + +1.4 959,002 + -0.0 959,002 + -1.4 959,003 - -0.2 959,003 - -2.7 959,059 - +0.3 959,059 - -0.0 959,077 - +0.6 959,079 - +1.8 959,079 - +1.2 959,079 - +1.4 959,079 - +1.6 959,079 - +0.7 959,452 + -2.2 959,597 - DDA3937_RS04360 0.20 +2.1 959,616 + DDA3937_RS04360 0.24 +0.8 959,616 + DDA3937_RS04360 0.24 +1.1 959,617 - DDA3937_RS04360 0.24 +2.0 959,617 - DDA3937_RS04360 0.24 -3.3 959,655 + DDA3937_RS04360 0.32 +2.2 959,656 - DDA3937_RS04360 0.33 +0.0 959,666 + DDA3937_RS04360 0.35 -0.0 959,788 + DDA3937_RS04360 0.62 -2.7 959,789 - DDA3937_RS04360 0.62 +0.1 959,979 - -1.2 960,894 - +1.0 960,894 - +4.0 960,894 - -1.9 960,894 - -1.7 960,946 + -0.2 960,946 + +0.5 960,947 - -0.9 960,947 - -2.3 960,952 + -0.6 960,952 + -1.4 960,952 + -1.2 960,952 + +1.4 960,952 + +0.3 960,953 - -1.6 960,953 - +0.5 960,953 - -1.4 960,953 - +0.8 960,953 - -1.6 960,953 - +0.1 960,953 - -1.2 960,953 - -3.9 960,953 - -2.3 960,955 + +0.4 960,955 + +1.7 960,955 + +3.0 960,955 + -0.2 960,955 + -1.0 960,955 + -1.5 960,956 - +0.6 960,956 - +2.1 960,957 + +0.7
Or see this region's nucleotide sequence