Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04335 and DDA3937_RS04340 are separated by 395 nucleotides DDA3937_RS04340 and DDA3937_RS04345 are separated by 158 nucleotides DDA3937_RS04345 and DDA3937_RS04350 are separated by 80 nucleotides
DDA3937_RS04335: DDA3937_RS04335 - nucleotide exchange factor GrpE, at 952,359 to 952,946
_RS04335
DDA3937_RS04340: DDA3937_RS04340 - Nramp family divalent metal transporter, at 953,342 to 954,577
_RS04340
DDA3937_RS04345: DDA3937_RS04345 - GDP-mannose pyrophosphatase NudK, at 954,736 to 955,320
_RS04345
DDA3937_RS04350: DDA3937_RS04350 - transaldolase, at 955,401 to 956,351
_RS04350
Position (kb) 953
954
955 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 952.945 kb on - strand at 953.038 kb on + strand at 953.038 kb on + strand at 953.039 kb on - strand at 953.050 kb on + strand at 953.051 kb on - strand at 953.051 kb on - strand at 953.051 kb on - strand at 953.051 kb on - strand at 953.100 kb on + strand at 953.101 kb on - strand at 953.101 kb on - strand at 953.104 kb on + strand at 953.104 kb on + strand at 953.105 kb on - strand at 953.138 kb on + strand at 953.138 kb on + strand at 953.142 kb on + strand at 953.143 kb on - strand at 953.179 kb on + strand at 953.179 kb on + strand at 953.180 kb on - strand at 953.180 kb on - strand at 953.194 kb on + strand at 953.194 kb on + strand at 953.195 kb on - strand at 953.195 kb on - strand at 953.195 kb on - strand at 953.195 kb on - strand at 953.198 kb on + strand at 953.198 kb on + strand at 953.198 kb on + strand at 953.198 kb on + strand at 953.198 kb on + strand at 953.199 kb on - strand at 953.201 kb on + strand at 953.202 kb on - strand at 953.202 kb on - strand at 953.236 kb on + strand at 953.236 kb on + strand at 953.236 kb on + strand at 953.237 kb on - strand at 953.237 kb on - strand at 953.237 kb on - strand at 953.237 kb on - strand at 953.242 kb on - strand at 953.309 kb on + strand at 953.312 kb on + strand at 953.312 kb on + strand at 953.321 kb on - strand at 953.326 kb on + strand at 953.327 kb on - strand at 953.327 kb on - strand at 953.327 kb on - strand at 953.327 kb on - strand at 953.327 kb on - strand at 953.327 kb on - strand at 953.327 kb on - strand at 953.327 kb on - strand at 953.335 kb on + strand at 953.341 kb on + strand at 953.341 kb on + strand at 953.341 kb on + strand at 953.342 kb on - strand at 953.358 kb on + strand at 953.359 kb on - strand at 953.377 kb on + strand at 953.377 kb on + strand at 953.377 kb on + strand at 953.377 kb on + strand at 953.435 kb on + strand at 953.436 kb on - strand at 953.438 kb on - strand at 953.544 kb on + strand, within DDA3937_RS04340 at 953.593 kb on + strand, within DDA3937_RS04340 at 953.593 kb on + strand, within DDA3937_RS04340 at 953.594 kb on - strand, within DDA3937_RS04340 at 953.594 kb on - strand, within DDA3937_RS04340 at 953.701 kb on + strand, within DDA3937_RS04340 at 953.706 kb on + strand, within DDA3937_RS04340 at 953.706 kb on + strand, within DDA3937_RS04340 at 953.707 kb on - strand, within DDA3937_RS04340 at 953.843 kb on + strand, within DDA3937_RS04340 at 953.843 kb on + strand, within DDA3937_RS04340 at 953.844 kb on - strand, within DDA3937_RS04340 at 953.844 kb on - strand, within DDA3937_RS04340 at 953.844 kb on - strand, within DDA3937_RS04340 at 953.844 kb on - strand, within DDA3937_RS04340 at 953.844 kb on - strand, within DDA3937_RS04340 at 953.962 kb on + strand, within DDA3937_RS04340 at 953.962 kb on + strand, within DDA3937_RS04340 at 953.962 kb on + strand, within DDA3937_RS04340 at 953.963 kb on - strand, within DDA3937_RS04340 at 953.963 kb on - strand, within DDA3937_RS04340 at 953.963 kb on - strand, within DDA3937_RS04340 at 953.963 kb on - strand, within DDA3937_RS04340 at 953.965 kb on + strand, within DDA3937_RS04340 at 953.966 kb on - strand, within DDA3937_RS04340 at 953.966 kb on - strand, within DDA3937_RS04340 at 953.981 kb on + strand, within DDA3937_RS04340 at 953.981 kb on + strand, within DDA3937_RS04340 at 953.981 kb on + strand, within DDA3937_RS04340 at 953.982 kb on - strand, within DDA3937_RS04340 at 954.036 kb on - strand, within DDA3937_RS04340 at 954.046 kb on + strand, within DDA3937_RS04340 at 954.168 kb on - strand, within DDA3937_RS04340 at 954.168 kb on - strand, within DDA3937_RS04340 at 954.304 kb on + strand, within DDA3937_RS04340 at 954.393 kb on + strand, within DDA3937_RS04340 at 954.393 kb on + strand, within DDA3937_RS04340 at 954.394 kb on - strand, within DDA3937_RS04340 at 954.505 kb on + strand at 954.505 kb on + strand at 954.505 kb on + strand at 954.511 kb on + strand at 954.512 kb on - strand at 954.526 kb on + strand at 954.527 kb on - strand at 954.527 kb on - strand at 954.527 kb on - strand at 954.548 kb on + strand at 954.664 kb on + strand at 954.665 kb on - strand at 954.697 kb on - strand at 954.697 kb on - strand at 954.697 kb on - strand at 954.697 kb on - strand at 954.699 kb on + strand at 954.699 kb on + strand at 954.700 kb on - strand at 954.722 kb on - strand at 954.750 kb on + strand at 954.751 kb on - strand at 954.753 kb on + strand at 954.754 kb on - strand at 954.798 kb on + strand, within DDA3937_RS04345 at 954.799 kb on - strand, within DDA3937_RS04345 at 954.799 kb on - strand, within DDA3937_RS04345 at 954.799 kb on - strand, within DDA3937_RS04345 at 954.802 kb on + strand, within DDA3937_RS04345 at 954.802 kb on + strand, within DDA3937_RS04345 at 954.802 kb on + strand, within DDA3937_RS04345 at 954.802 kb on + strand, within DDA3937_RS04345 at 954.802 kb on + strand, within DDA3937_RS04345 at 954.802 kb on + strand, within DDA3937_RS04345 at 954.802 kb on + strand, within DDA3937_RS04345 at 954.802 kb on + strand, within DDA3937_RS04345 at 954.802 kb on + strand, within DDA3937_RS04345 at 954.802 kb on + strand, within DDA3937_RS04345 at 954.803 kb on - strand, within DDA3937_RS04345 at 954.803 kb on - strand, within DDA3937_RS04345 at 954.803 kb on - strand, within DDA3937_RS04345 at 954.803 kb on - strand, within DDA3937_RS04345 at 954.803 kb on - strand, within DDA3937_RS04345 at 954.803 kb on - strand, within DDA3937_RS04345 at 954.803 kb on - strand, within DDA3937_RS04345 at 954.859 kb on + strand, within DDA3937_RS04345 at 954.859 kb on + strand, within DDA3937_RS04345 at 954.859 kb on + strand, within DDA3937_RS04345 at 954.859 kb on + strand, within DDA3937_RS04345 at 954.859 kb on + strand, within DDA3937_RS04345 at 954.859 kb on + strand, within DDA3937_RS04345 at 954.860 kb on - strand, within DDA3937_RS04345 at 954.860 kb on - strand, within DDA3937_RS04345 at 954.860 kb on - strand, within DDA3937_RS04345 at 954.860 kb on - strand, within DDA3937_RS04345 at 954.892 kb on + strand, within DDA3937_RS04345 at 954.892 kb on + strand, within DDA3937_RS04345 at 954.892 kb on + strand, within DDA3937_RS04345 at 954.892 kb on + strand, within DDA3937_RS04345 at 954.893 kb on - strand, within DDA3937_RS04345 at 954.917 kb on + strand, within DDA3937_RS04345 at 954.918 kb on - strand, within DDA3937_RS04345 at 954.947 kb on - strand, within DDA3937_RS04345 at 955.029 kb on + strand, within DDA3937_RS04345 at 955.062 kb on - strand, within DDA3937_RS04345 at 955.090 kb on + strand, within DDA3937_RS04345 at 955.090 kb on + strand, within DDA3937_RS04345 at 955.090 kb on + strand, within DDA3937_RS04345 at 955.090 kb on + strand, within DDA3937_RS04345 at 955.090 kb on + strand, within DDA3937_RS04345 at 955.090 kb on + strand, within DDA3937_RS04345 at 955.090 kb on + strand, within DDA3937_RS04345 at 955.090 kb on + strand, within DDA3937_RS04345 at 955.091 kb on - strand, within DDA3937_RS04345 at 955.091 kb on - strand, within DDA3937_RS04345 at 955.091 kb on - strand, within DDA3937_RS04345 at 955.091 kb on - strand, within DDA3937_RS04345 at 955.091 kb on - strand, within DDA3937_RS04345 at 955.091 kb on - strand, within DDA3937_RS04345 at 955.091 kb on - strand, within DDA3937_RS04345 at 955.091 kb on - strand, within DDA3937_RS04345 at 955.091 kb on - strand, within DDA3937_RS04345 at 955.091 kb on - strand, within DDA3937_RS04345 at 955.159 kb on - strand, within DDA3937_RS04345 at 955.192 kb on - strand, within DDA3937_RS04345 at 955.249 kb on - strand, within DDA3937_RS04345 at 955.260 kb on + strand, within DDA3937_RS04345 at 955.260 kb on + strand, within DDA3937_RS04345 at 955.261 kb on - strand, within DDA3937_RS04345 at 955.329 kb on - strand at 955.340 kb on + strand at 955.341 kb on - strand at 955.346 kb on + strand at 955.346 kb on + strand at 955.403 kb on - strand at 955.403 kb on - strand at 955.403 kb on - strand at 955.403 kb on - strand at 955.499 kb on + strand, within DDA3937_RS04350 at 955.499 kb on + strand, within DDA3937_RS04350 at 955.499 kb on + strand, within DDA3937_RS04350 at 955.500 kb on - strand, within DDA3937_RS04350 at 955.500 kb on - strand, within DDA3937_RS04350 at 955.500 kb on - strand, within DDA3937_RS04350
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 952,945 - -2.6 953,038 + -2.1 953,038 + +0.1 953,039 - -1.0 953,050 + -1.7 953,051 - -2.0 953,051 - -2.6 953,051 - +2.1 953,051 - -1.6 953,100 + -1.1 953,101 - -2.0 953,101 - -1.0 953,104 + +0.2 953,104 + +1.8 953,105 - -1.7 953,138 + -0.6 953,138 + +1.1 953,142 + -2.3 953,143 - -2.9 953,179 + -0.7 953,179 + +1.6 953,180 - -1.6 953,180 - +1.3 953,194 + +0.6 953,194 + +0.9 953,195 - +0.9 953,195 - -0.9 953,195 - -1.9 953,195 - -1.4 953,198 + -1.3 953,198 + +1.4 953,198 + +0.2 953,198 + -1.6 953,198 + -2.0 953,199 - +1.3 953,201 + +1.2 953,202 - +2.8 953,202 - -0.6 953,236 + -0.6 953,236 + -2.8 953,236 + -0.9 953,237 - -3.6 953,237 - -1.1 953,237 - -1.6 953,237 - +0.4 953,242 - -2.9 953,309 + -1.1 953,312 + -0.1 953,312 + -1.7 953,321 - -2.0 953,326 + -3.0 953,327 - -2.0 953,327 - -2.6 953,327 - -1.9 953,327 - -1.9 953,327 - -0.4 953,327 - -2.3 953,327 - -1.4 953,327 - -1.1 953,335 + -1.7 953,341 + +0.0 953,341 + -2.4 953,341 + -0.8 953,342 - -0.0 953,358 + -3.4 953,359 - -2.7 953,377 + -2.4 953,377 + -2.9 953,377 + +2.4 953,377 + -1.5 953,435 + -1.4 953,436 - -0.3 953,438 - -1.4 953,544 + DDA3937_RS04340 0.16 -3.1 953,593 + DDA3937_RS04340 0.20 -0.1 953,593 + DDA3937_RS04340 0.20 -1.1 953,594 - DDA3937_RS04340 0.20 -1.1 953,594 - DDA3937_RS04340 0.20 -2.6 953,701 + DDA3937_RS04340 0.29 -2.7 953,706 + DDA3937_RS04340 0.29 -0.6 953,706 + DDA3937_RS04340 0.29 -1.6 953,707 - DDA3937_RS04340 0.30 +0.9 953,843 + DDA3937_RS04340 0.41 -2.1 953,843 + DDA3937_RS04340 0.41 -1.9 953,844 - DDA3937_RS04340 0.41 -0.3 953,844 - DDA3937_RS04340 0.41 -3.6 953,844 - DDA3937_RS04340 0.41 -0.7 953,844 - DDA3937_RS04340 0.41 -2.5 953,844 - DDA3937_RS04340 0.41 -1.7 953,962 + DDA3937_RS04340 0.50 -2.3 953,962 + DDA3937_RS04340 0.50 -0.6 953,962 + DDA3937_RS04340 0.50 -1.9 953,963 - DDA3937_RS04340 0.50 -1.2 953,963 - DDA3937_RS04340 0.50 -2.1 953,963 - DDA3937_RS04340 0.50 -0.8 953,963 - DDA3937_RS04340 0.50 -0.8 953,965 + DDA3937_RS04340 0.50 -1.4 953,966 - DDA3937_RS04340 0.50 -2.9 953,966 - DDA3937_RS04340 0.50 -0.9 953,981 + DDA3937_RS04340 0.52 +0.6 953,981 + DDA3937_RS04340 0.52 -0.1 953,981 + DDA3937_RS04340 0.52 -0.6 953,982 - DDA3937_RS04340 0.52 -0.1 954,036 - DDA3937_RS04340 0.56 -0.9 954,046 + DDA3937_RS04340 0.57 -1.0 954,168 - DDA3937_RS04340 0.67 -2.5 954,168 - DDA3937_RS04340 0.67 +1.8 954,304 + DDA3937_RS04340 0.78 +1.2 954,393 + DDA3937_RS04340 0.85 -3.1 954,393 + DDA3937_RS04340 0.85 +0.4 954,394 - DDA3937_RS04340 0.85 -2.7 954,505 + -2.6 954,505 + -0.6 954,505 + -0.8 954,511 + -0.8 954,512 - -1.4 954,526 + -1.1 954,527 - -2.1 954,527 - +1.0 954,527 - -2.3 954,548 + -0.1 954,664 + +2.0 954,665 - -1.4 954,697 - -0.1 954,697 - -1.4 954,697 - -2.5 954,697 - +0.2 954,699 + +1.4 954,699 + -0.6 954,700 - +0.1 954,722 - +1.4 954,750 + +0.1 954,751 - -1.7 954,753 + +0.7 954,754 - -3.8 954,798 + DDA3937_RS04345 0.11 -1.7 954,799 - DDA3937_RS04345 0.11 -1.2 954,799 - DDA3937_RS04345 0.11 -1.0 954,799 - DDA3937_RS04345 0.11 -0.4 954,802 + DDA3937_RS04345 0.11 -1.6 954,802 + DDA3937_RS04345 0.11 -1.0 954,802 + DDA3937_RS04345 0.11 +0.9 954,802 + DDA3937_RS04345 0.11 +1.0 954,802 + DDA3937_RS04345 0.11 +0.8 954,802 + DDA3937_RS04345 0.11 -0.3 954,802 + DDA3937_RS04345 0.11 -0.7 954,802 + DDA3937_RS04345 0.11 +1.0 954,802 + DDA3937_RS04345 0.11 +0.4 954,802 + DDA3937_RS04345 0.11 -1.4 954,803 - DDA3937_RS04345 0.11 -0.4 954,803 - DDA3937_RS04345 0.11 -1.6 954,803 - DDA3937_RS04345 0.11 -2.1 954,803 - DDA3937_RS04345 0.11 +0.3 954,803 - DDA3937_RS04345 0.11 -1.9 954,803 - DDA3937_RS04345 0.11 -2.1 954,803 - DDA3937_RS04345 0.11 -3.6 954,859 + DDA3937_RS04345 0.21 +0.8 954,859 + DDA3937_RS04345 0.21 -2.5 954,859 + DDA3937_RS04345 0.21 -0.9 954,859 + DDA3937_RS04345 0.21 -0.7 954,859 + DDA3937_RS04345 0.21 -2.5 954,859 + DDA3937_RS04345 0.21 -1.1 954,860 - DDA3937_RS04345 0.21 -0.0 954,860 - DDA3937_RS04345 0.21 -3.1 954,860 - DDA3937_RS04345 0.21 -1.8 954,860 - DDA3937_RS04345 0.21 -2.3 954,892 + DDA3937_RS04345 0.27 -1.7 954,892 + DDA3937_RS04345 0.27 -1.1 954,892 + DDA3937_RS04345 0.27 -2.0 954,892 + DDA3937_RS04345 0.27 -1.4 954,893 - DDA3937_RS04345 0.27 -0.6 954,917 + DDA3937_RS04345 0.31 -1.4 954,918 - DDA3937_RS04345 0.31 -2.3 954,947 - DDA3937_RS04345 0.36 +1.1 955,029 + DDA3937_RS04345 0.50 -1.1 955,062 - DDA3937_RS04345 0.56 -1.4 955,090 + DDA3937_RS04345 0.61 -0.6 955,090 + DDA3937_RS04345 0.61 +0.5 955,090 + DDA3937_RS04345 0.61 -0.1 955,090 + DDA3937_RS04345 0.61 +0.6 955,090 + DDA3937_RS04345 0.61 -0.9 955,090 + DDA3937_RS04345 0.61 -0.9 955,090 + DDA3937_RS04345 0.61 -3.1 955,090 + DDA3937_RS04345 0.61 -0.2 955,091 - DDA3937_RS04345 0.61 -2.8 955,091 - DDA3937_RS04345 0.61 +0.4 955,091 - DDA3937_RS04345 0.61 -0.9 955,091 - DDA3937_RS04345 0.61 -2.5 955,091 - DDA3937_RS04345 0.61 +1.1 955,091 - DDA3937_RS04345 0.61 -1.4 955,091 - DDA3937_RS04345 0.61 -0.8 955,091 - DDA3937_RS04345 0.61 -0.7 955,091 - DDA3937_RS04345 0.61 -0.9 955,091 - DDA3937_RS04345 0.61 -2.4 955,159 - DDA3937_RS04345 0.72 +3.6 955,192 - DDA3937_RS04345 0.78 -0.7 955,249 - DDA3937_RS04345 0.88 +0.0 955,260 + DDA3937_RS04345 0.90 -0.4 955,260 + DDA3937_RS04345 0.90 +0.6 955,261 - DDA3937_RS04345 0.90 -0.7 955,329 - -1.1 955,340 + -0.2 955,341 - +3.0 955,346 + +1.2 955,346 + -3.4 955,403 - -2.6 955,403 - +0.7 955,403 - -4.3 955,403 - +0.7 955,499 + DDA3937_RS04350 0.10 -0.9 955,499 + DDA3937_RS04350 0.10 -0.6 955,499 + DDA3937_RS04350 0.10 -1.1 955,500 - DDA3937_RS04350 0.10 -0.6 955,500 - DDA3937_RS04350 0.10 +0.6 955,500 - DDA3937_RS04350 0.10 +1.6
Or see this region's nucleotide sequence