Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04260

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS04255 and DDA3937_RS04260 overlap by 1 nucleotidesDDA3937_RS04260 and DDA3937_RS04265 overlap by 4 nucleotides DDA3937_RS04255: DDA3937_RS04255 - phage tail tape measure protein, at 937,040 to 939,004 _RS04255 DDA3937_RS04260: DDA3937_RS04260 - DUF2590 family protein, at 939,004 to 939,333 _RS04260 DDA3937_RS04265: DDA3937_RS04265 - baseplate J/gp47 family protein, at 939,330 to 940,514 _RS04265 Position (kb) 939 940Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 938.036 kb on - strand, within DDA3937_RS04255at 938.043 kb on - strand, within DDA3937_RS04255at 938.087 kb on + strand, within DDA3937_RS04255at 938.088 kb on - strand, within DDA3937_RS04255at 938.088 kb on - strand, within DDA3937_RS04255at 938.088 kb on - strand, within DDA3937_RS04255at 938.181 kb on + strand, within DDA3937_RS04255at 938.224 kb on + strand, within DDA3937_RS04255at 938.272 kb on - strand, within DDA3937_RS04255at 938.272 kb on - strand, within DDA3937_RS04255at 938.315 kb on - strand, within DDA3937_RS04255at 938.324 kb on + strand, within DDA3937_RS04255at 938.324 kb on + strand, within DDA3937_RS04255at 938.325 kb on - strand, within DDA3937_RS04255at 938.325 kb on - strand, within DDA3937_RS04255at 938.326 kb on + strand, within DDA3937_RS04255at 938.362 kb on + strand, within DDA3937_RS04255at 938.362 kb on + strand, within DDA3937_RS04255at 938.363 kb on - strand, within DDA3937_RS04255at 938.363 kb on - strand, within DDA3937_RS04255at 938.363 kb on - strand, within DDA3937_RS04255at 938.376 kb on + strand, within DDA3937_RS04255at 938.376 kb on + strand, within DDA3937_RS04255at 938.376 kb on + strand, within DDA3937_RS04255at 938.376 kb on + strand, within DDA3937_RS04255at 938.376 kb on + strand, within DDA3937_RS04255at 938.376 kb on + strand, within DDA3937_RS04255at 938.377 kb on - strand, within DDA3937_RS04255at 938.377 kb on - strand, within DDA3937_RS04255at 938.377 kb on - strand, within DDA3937_RS04255at 938.415 kb on + strand, within DDA3937_RS04255at 938.415 kb on + strand, within DDA3937_RS04255at 938.416 kb on - strand, within DDA3937_RS04255at 938.416 kb on - strand, within DDA3937_RS04255at 938.487 kb on - strand, within DDA3937_RS04255at 938.494 kb on + strand, within DDA3937_RS04255at 938.495 kb on - strand, within DDA3937_RS04255at 938.497 kb on + strand, within DDA3937_RS04255at 938.497 kb on + strand, within DDA3937_RS04255at 938.498 kb on - strand, within DDA3937_RS04255at 938.498 kb on - strand, within DDA3937_RS04255at 938.514 kb on + strand, within DDA3937_RS04255at 938.527 kb on + strand, within DDA3937_RS04255at 938.583 kb on + strand, within DDA3937_RS04255at 938.583 kb on + strand, within DDA3937_RS04255at 938.583 kb on + strand, within DDA3937_RS04255at 938.584 kb on - strand, within DDA3937_RS04255at 938.584 kb on - strand, within DDA3937_RS04255at 938.631 kb on + strand, within DDA3937_RS04255at 938.631 kb on + strand, within DDA3937_RS04255at 938.632 kb on - strand, within DDA3937_RS04255at 938.632 kb on - strand, within DDA3937_RS04255at 938.724 kb on + strand, within DDA3937_RS04255at 938.724 kb on + strand, within DDA3937_RS04255at 938.725 kb on - strand, within DDA3937_RS04255at 938.745 kb on - strand, within DDA3937_RS04255at 938.767 kb on - strand, within DDA3937_RS04255at 938.788 kb on + strand, within DDA3937_RS04255at 938.789 kb on - strand, within DDA3937_RS04255at 938.789 kb on - strand, within DDA3937_RS04255at 938.789 kb on - strand, within DDA3937_RS04255at 938.794 kb on + strand, within DDA3937_RS04255at 938.794 kb on + strand, within DDA3937_RS04255at 938.794 kb on + strand, within DDA3937_RS04255at 938.795 kb on - strand, within DDA3937_RS04255at 938.795 kb on - strand, within DDA3937_RS04255at 938.832 kb on + strandat 938.836 kb on - strandat 938.891 kb on - strandat 938.891 kb on - strandat 938.894 kb on - strandat 938.894 kb on - strandat 938.909 kb on + strandat 938.910 kb on - strandat 938.910 kb on - strandat 938.931 kb on + strandat 938.948 kb on + strandat 938.949 kb on - strandat 938.949 kb on - strandat 939.019 kb on + strandat 939.021 kb on + strandat 939.021 kb on + strandat 939.022 kb on - strandat 939.036 kb on + strandat 939.037 kb on - strand, within DDA3937_RS04260at 939.037 kb on - strand, within DDA3937_RS04260at 939.099 kb on + strand, within DDA3937_RS04260at 939.100 kb on - strand, within DDA3937_RS04260at 939.188 kb on + strand, within DDA3937_RS04260at 939.188 kb on + strand, within DDA3937_RS04260at 939.189 kb on - strand, within DDA3937_RS04260at 939.189 kb on - strand, within DDA3937_RS04260at 939.189 kb on - strandat 939.189 kb on - strand, within DDA3937_RS04260at 939.204 kb on + strand, within DDA3937_RS04260at 939.205 kb on - strand, within DDA3937_RS04260at 939.232 kb on - strand, within DDA3937_RS04260at 939.296 kb on - strand, within DDA3937_RS04260at 939.329 kb on + strandat 939.329 kb on + strandat 939.329 kb on + strandat 939.330 kb on - strandat 939.354 kb on + strandat 939.403 kb on + strandat 939.427 kb on + strandat 939.449 kb on + strand, within DDA3937_RS04265at 939.449 kb on + strand, within DDA3937_RS04265at 939.450 kb on - strand, within DDA3937_RS04265at 939.538 kb on + strand, within DDA3937_RS04265at 939.538 kb on + strand, within DDA3937_RS04265at 939.538 kb on + strand, within DDA3937_RS04265at 939.539 kb on - strand, within DDA3937_RS04265at 939.539 kb on - strand, within DDA3937_RS04265at 939.539 kb on - strand, within DDA3937_RS04265at 939.539 kb on - strand, within DDA3937_RS04265at 939.539 kb on - strand, within DDA3937_RS04265at 939.551 kb on + strand, within DDA3937_RS04265at 939.551 kb on + strand, within DDA3937_RS04265at 939.551 kb on + strand, within DDA3937_RS04265at 939.551 kb on + strand, within DDA3937_RS04265at 939.551 kb on + strand, within DDA3937_RS04265at 939.551 kb on + strand, within DDA3937_RS04265at 939.551 kb on + strand, within DDA3937_RS04265at 939.551 kb on + strand, within DDA3937_RS04265at 939.551 kb on + strand, within DDA3937_RS04265at 939.551 kb on + strand, within DDA3937_RS04265at 939.552 kb on - strand, within DDA3937_RS04265at 939.552 kb on - strand, within DDA3937_RS04265at 939.552 kb on - strand, within DDA3937_RS04265at 939.552 kb on - strand, within DDA3937_RS04265at 939.552 kb on - strand, within DDA3937_RS04265at 939.552 kb on - strand, within DDA3937_RS04265at 939.552 kb on - strand, within DDA3937_RS04265at 939.552 kb on - strand, within DDA3937_RS04265at 939.555 kb on + strand, within DDA3937_RS04265at 939.555 kb on + strand, within DDA3937_RS04265at 939.555 kb on + strand, within DDA3937_RS04265at 939.556 kb on - strand, within DDA3937_RS04265at 939.556 kb on - strand, within DDA3937_RS04265at 939.556 kb on - strand, within DDA3937_RS04265at 939.556 kb on - strand, within DDA3937_RS04265at 939.556 kb on - strand, within DDA3937_RS04265at 939.563 kb on + strand, within DDA3937_RS04265at 939.654 kb on + strand, within DDA3937_RS04265at 939.654 kb on + strand, within DDA3937_RS04265at 939.654 kb on + strand, within DDA3937_RS04265at 939.654 kb on + strand, within DDA3937_RS04265at 939.655 kb on - strand, within DDA3937_RS04265at 939.655 kb on - strand, within DDA3937_RS04265at 939.655 kb on - strand, within DDA3937_RS04265at 939.984 kb on + strand, within DDA3937_RS04265at 939.985 kb on - strand, within DDA3937_RS04265at 939.985 kb on - strand, within DDA3937_RS04265at 940.095 kb on + strand, within DDA3937_RS04265at 940.095 kb on + strand, within DDA3937_RS04265at 940.095 kb on + strand, within DDA3937_RS04265at 940.095 kb on + strand, within DDA3937_RS04265at 940.096 kb on - strand, within DDA3937_RS04265at 940.096 kb on - strand, within DDA3937_RS04265at 940.096 kb on - strand, within DDA3937_RS04265at 940.152 kb on + strand, within DDA3937_RS04265at 940.152 kb on + strand, within DDA3937_RS04265at 940.153 kb on - strand, within DDA3937_RS04265at 940.153 kb on - strand, within DDA3937_RS04265at 940.153 kb on - strand, within DDA3937_RS04265at 940.228 kb on + strand, within DDA3937_RS04265at 940.242 kb on + strand, within DDA3937_RS04265at 940.242 kb on + strand, within DDA3937_RS04265at 940.242 kb on + strand, within DDA3937_RS04265at 940.243 kb on - strand, within DDA3937_RS04265at 940.243 kb on - strand, within DDA3937_RS04265at 940.309 kb on + strandat 940.309 kb on + strand, within DDA3937_RS04265at 940.309 kb on + strand, within DDA3937_RS04265at 940.310 kb on - strand, within DDA3937_RS04265

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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938,036 - DDA3937_RS04255 0.51 +0.2
938,043 - DDA3937_RS04255 0.51 -0.7
938,087 + DDA3937_RS04255 0.53 +2.0
938,088 - DDA3937_RS04255 0.53 +0.9
938,088 - DDA3937_RS04255 0.53 -2.1
938,088 - DDA3937_RS04255 0.53 -1.1
938,181 + DDA3937_RS04255 0.58 +2.0
938,224 + DDA3937_RS04255 0.60 +1.3
938,272 - DDA3937_RS04255 0.63 -2.4
938,272 - DDA3937_RS04255 0.63 -2.8
938,315 - DDA3937_RS04255 0.65 +0.8
938,324 + DDA3937_RS04255 0.65 +1.3
938,324 + DDA3937_RS04255 0.65 +1.0
938,325 - DDA3937_RS04255 0.65 +0.3
938,325 - DDA3937_RS04255 0.65 -2.6
938,326 + DDA3937_RS04255 0.65 -2.1
938,362 + DDA3937_RS04255 0.67 +1.4
938,362 + DDA3937_RS04255 0.67 +1.0
938,363 - DDA3937_RS04255 0.67 -1.7
938,363 - DDA3937_RS04255 0.67 +0.2
938,363 - DDA3937_RS04255 0.67 -0.1
938,376 + DDA3937_RS04255 0.68 -0.1
938,376 + DDA3937_RS04255 0.68 +0.5
938,376 + DDA3937_RS04255 0.68 -0.6
938,376 + DDA3937_RS04255 0.68 +1.3
938,376 + DDA3937_RS04255 0.68 +0.4
938,376 + DDA3937_RS04255 0.68 +0.3
938,377 - DDA3937_RS04255 0.68 -1.1
938,377 - DDA3937_RS04255 0.68 -4.1
938,377 - DDA3937_RS04255 0.68 -1.7
938,415 + DDA3937_RS04255 0.70 -1.1
938,415 + DDA3937_RS04255 0.70 +0.5
938,416 - DDA3937_RS04255 0.70 -0.9
938,416 - DDA3937_RS04255 0.70 -1.7
938,487 - DDA3937_RS04255 0.74 -0.1
938,494 + DDA3937_RS04255 0.74 +2.0
938,495 - DDA3937_RS04255 0.74 -2.4
938,497 + DDA3937_RS04255 0.74 -2.6
938,497 + DDA3937_RS04255 0.74 +0.7
938,498 - DDA3937_RS04255 0.74 +0.9
938,498 - DDA3937_RS04255 0.74 +0.4
938,514 + DDA3937_RS04255 0.75 -0.8
938,527 + DDA3937_RS04255 0.76 -1.7
938,583 + DDA3937_RS04255 0.79 +1.8
938,583 + DDA3937_RS04255 0.79 +2.4
938,583 + DDA3937_RS04255 0.79 -0.2
938,584 - DDA3937_RS04255 0.79 +0.0
938,584 - DDA3937_RS04255 0.79 -1.4
938,631 + DDA3937_RS04255 0.81 -2.8
938,631 + DDA3937_RS04255 0.81 -0.7
938,632 - DDA3937_RS04255 0.81 -1.2
938,632 - DDA3937_RS04255 0.81 +1.4
938,724 + DDA3937_RS04255 0.86 +0.3
938,724 + DDA3937_RS04255 0.86 +1.4
938,725 - DDA3937_RS04255 0.86 -1.4
938,745 - DDA3937_RS04255 0.87 -2.6
938,767 - DDA3937_RS04255 0.88 -1.9
938,788 + DDA3937_RS04255 0.89 -4.0
938,789 - DDA3937_RS04255 0.89 +0.5
938,789 - DDA3937_RS04255 0.89 +1.0
938,789 - DDA3937_RS04255 0.89 -1.7
938,794 + DDA3937_RS04255 0.89 -2.6
938,794 + DDA3937_RS04255 0.89 +2.3
938,794 + DDA3937_RS04255 0.89 +0.9
938,795 - DDA3937_RS04255 0.89 -0.9
938,795 - DDA3937_RS04255 0.89 -2.4
938,832 + -2.6
938,836 - -1.3
938,891 - -0.1
938,891 - +1.6
938,894 - -1.3
938,894 - +0.6
938,909 + +1.0
938,910 - -0.9
938,910 - -2.9
938,931 + +0.2
938,948 + -0.4
938,949 - +0.4
938,949 - +0.2
939,019 + +0.7
939,021 + +0.4
939,021 + -1.7
939,022 - -0.9
939,036 + +1.0
939,037 - DDA3937_RS04260 0.10 +0.1
939,037 - DDA3937_RS04260 0.10 -1.5
939,099 + DDA3937_RS04260 0.29 -1.8
939,100 - DDA3937_RS04260 0.29 -3.3
939,188 + DDA3937_RS04260 0.56 -1.1
939,188 + DDA3937_RS04260 0.56 -1.6
939,189 - DDA3937_RS04260 0.56 -0.5
939,189 - DDA3937_RS04260 0.56 +0.1
939,189 - +0.4
939,189 - DDA3937_RS04260 0.56 -1.4
939,204 + DDA3937_RS04260 0.61 -1.6
939,205 - DDA3937_RS04260 0.61 -0.0
939,232 - DDA3937_RS04260 0.69 -0.9
939,296 - DDA3937_RS04260 0.88 -0.9
939,329 + +0.9
939,329 + +2.1
939,329 + -1.0
939,330 - -0.6
939,354 + -2.5
939,403 + -0.9
939,427 + -2.6
939,449 + DDA3937_RS04265 0.10 +0.8
939,449 + DDA3937_RS04265 0.10 -3.5
939,450 - DDA3937_RS04265 0.10 -2.0
939,538 + DDA3937_RS04265 0.18 +1.0
939,538 + DDA3937_RS04265 0.18 +2.4
939,538 + DDA3937_RS04265 0.18 +1.0
939,539 - DDA3937_RS04265 0.18 -1.1
939,539 - DDA3937_RS04265 0.18 -0.5
939,539 - DDA3937_RS04265 0.18 -2.3
939,539 - DDA3937_RS04265 0.18 -2.0
939,539 - DDA3937_RS04265 0.18 -0.1
939,551 + DDA3937_RS04265 0.19 -2.2
939,551 + DDA3937_RS04265 0.19 +0.7
939,551 + DDA3937_RS04265 0.19 -1.9
939,551 + DDA3937_RS04265 0.19 -0.2
939,551 + DDA3937_RS04265 0.19 +0.8
939,551 + DDA3937_RS04265 0.19 +1.3
939,551 + DDA3937_RS04265 0.19 -1.7
939,551 + DDA3937_RS04265 0.19 -2.5
939,551 + DDA3937_RS04265 0.19 +2.8
939,551 + DDA3937_RS04265 0.19 -1.6
939,552 - DDA3937_RS04265 0.19 +0.1
939,552 - DDA3937_RS04265 0.19 +0.4
939,552 - DDA3937_RS04265 0.19 -1.4
939,552 - DDA3937_RS04265 0.19 +0.7
939,552 - DDA3937_RS04265 0.19 -0.4
939,552 - DDA3937_RS04265 0.19 -2.7
939,552 - DDA3937_RS04265 0.19 -2.0
939,552 - DDA3937_RS04265 0.19 -2.5
939,555 + DDA3937_RS04265 0.19 -0.9
939,555 + DDA3937_RS04265 0.19 -2.3
939,555 + DDA3937_RS04265 0.19 -0.3
939,556 - DDA3937_RS04265 0.19 -1.9
939,556 - DDA3937_RS04265 0.19 +1.6
939,556 - DDA3937_RS04265 0.19 +2.3
939,556 - DDA3937_RS04265 0.19 -2.8
939,556 - DDA3937_RS04265 0.19 -0.2
939,563 + DDA3937_RS04265 0.20 +0.2
939,654 + DDA3937_RS04265 0.27 -1.9
939,654 + DDA3937_RS04265 0.27 +0.0
939,654 + DDA3937_RS04265 0.27 -0.2
939,654 + DDA3937_RS04265 0.27 -2.2
939,655 - DDA3937_RS04265 0.27 -0.2
939,655 - DDA3937_RS04265 0.27 -0.9
939,655 - DDA3937_RS04265 0.27 -0.7
939,984 + DDA3937_RS04265 0.55 +0.3
939,985 - DDA3937_RS04265 0.55 -1.2
939,985 - DDA3937_RS04265 0.55 +2.7
940,095 + DDA3937_RS04265 0.65 +0.9
940,095 + DDA3937_RS04265 0.65 -1.9
940,095 + DDA3937_RS04265 0.65 -2.0
940,095 + DDA3937_RS04265 0.65 +0.4
940,096 - DDA3937_RS04265 0.65 +0.4
940,096 - DDA3937_RS04265 0.65 +0.2
940,096 - DDA3937_RS04265 0.65 +1.1
940,152 + DDA3937_RS04265 0.69 +0.9
940,152 + DDA3937_RS04265 0.69 -3.3
940,153 - DDA3937_RS04265 0.69 -0.9
940,153 - DDA3937_RS04265 0.69 +0.6
940,153 - DDA3937_RS04265 0.69 -1.9
940,228 + DDA3937_RS04265 0.76 -2.5
940,242 + DDA3937_RS04265 0.77 -3.1
940,242 + DDA3937_RS04265 0.77 -0.9
940,242 + DDA3937_RS04265 0.77 -0.9
940,243 - DDA3937_RS04265 0.77 +0.2
940,243 - DDA3937_RS04265 0.77 -1.9
940,309 + +0.4
940,309 + DDA3937_RS04265 0.83 -1.4
940,309 + DDA3937_RS04265 0.83 +0.8
940,310 - DDA3937_RS04265 0.83 +0.8

Or see this region's nucleotide sequence