Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04200 and DDA3937_RS04205 are separated by 3 nucleotides DDA3937_RS04205 and DDA3937_RS04210 are separated by 96 nucleotides DDA3937_RS04210 and DDA3937_RS04215 overlap by 4 nucleotides
DDA3937_RS04200: DDA3937_RS04200 - phage major capsid protein, P2 family, at 930,414 to 931,445
_RS04200
DDA3937_RS04205: DDA3937_RS04205 - terminase, at 931,449 to 932,150
_RS04205
DDA3937_RS04210: DDA3937_RS04210 - head completion/stabilization protein, at 932,247 to 932,699
_RS04210
DDA3937_RS04215: DDA3937_RS04215 - phage tail protein, at 932,696 to 933,193
_RS04215
Position (kb) 931
932
933 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 930.453 kb on + strand at 930.453 kb on + strand at 930.478 kb on - strand at 930.502 kb on - strand at 930.668 kb on + strand, within DDA3937_RS04200 at 930.699 kb on + strand, within DDA3937_RS04200 at 930.699 kb on + strand, within DDA3937_RS04200 at 930.699 kb on + strand, within DDA3937_RS04200 at 930.699 kb on + strand, within DDA3937_RS04200 at 930.699 kb on + strand, within DDA3937_RS04200 at 930.700 kb on - strand, within DDA3937_RS04200 at 930.700 kb on - strand, within DDA3937_RS04200 at 930.700 kb on - strand, within DDA3937_RS04200 at 930.701 kb on + strand, within DDA3937_RS04200 at 930.701 kb on + strand, within DDA3937_RS04200 at 930.701 kb on + strand, within DDA3937_RS04200 at 930.701 kb on + strand, within DDA3937_RS04200 at 930.702 kb on - strand, within DDA3937_RS04200 at 930.702 kb on - strand, within DDA3937_RS04200 at 930.702 kb on - strand, within DDA3937_RS04200 at 930.702 kb on - strand, within DDA3937_RS04200 at 930.797 kb on - strand, within DDA3937_RS04200 at 930.831 kb on - strand, within DDA3937_RS04200 at 931.053 kb on + strand, within DDA3937_RS04200 at 931.256 kb on + strand, within DDA3937_RS04200 at 931.256 kb on + strand, within DDA3937_RS04200 at 931.257 kb on - strand, within DDA3937_RS04200 at 931.257 kb on - strand, within DDA3937_RS04200 at 931.257 kb on - strand, within DDA3937_RS04200 at 931.257 kb on - strand, within DDA3937_RS04200 at 931.257 kb on - strand, within DDA3937_RS04200 at 931.257 kb on - strand, within DDA3937_RS04200 at 931.257 kb on - strand, within DDA3937_RS04200 at 931.257 kb on - strand, within DDA3937_RS04200 at 931.257 kb on - strand, within DDA3937_RS04200 at 931.257 kb on - strand, within DDA3937_RS04200 at 931.257 kb on - strand, within DDA3937_RS04200 at 931.257 kb on - strand, within DDA3937_RS04200 at 931.260 kb on + strand, within DDA3937_RS04200 at 931.260 kb on + strand, within DDA3937_RS04200 at 931.260 kb on + strand, within DDA3937_RS04200 at 931.261 kb on - strand, within DDA3937_RS04200 at 931.261 kb on - strand, within DDA3937_RS04200 at 931.261 kb on - strand, within DDA3937_RS04200 at 931.261 kb on - strand, within DDA3937_RS04200 at 931.261 kb on - strand, within DDA3937_RS04200 at 931.261 kb on - strand, within DDA3937_RS04200 at 931.261 kb on - strand, within DDA3937_RS04200 at 931.329 kb on + strand, within DDA3937_RS04200 at 931.329 kb on + strand, within DDA3937_RS04200 at 931.330 kb on - strand at 931.347 kb on + strand at 931.359 kb on + strand at 931.371 kb on + strand at 931.372 kb on - strand at 931.372 kb on - strand at 931.372 kb on - strand at 931.372 kb on - strand at 931.421 kb on + strand at 931.475 kb on + strand at 931.504 kb on + strand at 931.505 kb on - strand at 931.613 kb on - strand, within DDA3937_RS04205 at 931.613 kb on - strand, within DDA3937_RS04205 at 931.658 kb on - strand, within DDA3937_RS04205 at 931.687 kb on - strand, within DDA3937_RS04205 at 931.767 kb on - strand, within DDA3937_RS04205 at 931.767 kb on - strand, within DDA3937_RS04205 at 931.907 kb on + strand, within DDA3937_RS04205 at 931.953 kb on - strand, within DDA3937_RS04205 at 931.979 kb on - strand, within DDA3937_RS04205 at 932.060 kb on - strand, within DDA3937_RS04205 at 932.060 kb on - strand, within DDA3937_RS04205 at 932.095 kb on + strand at 932.149 kb on - strand at 932.149 kb on - strand at 932.157 kb on - strand at 932.271 kb on + strand at 932.387 kb on - strand, within DDA3937_RS04210 at 932.695 kb on + strand at 932.696 kb on - strand at 932.696 kb on - strand at 932.791 kb on + strand, within DDA3937_RS04215 at 932.825 kb on + strand, within DDA3937_RS04215 at 932.825 kb on + strand, within DDA3937_RS04215 at 932.826 kb on - strand, within DDA3937_RS04215 at 932.951 kb on + strand, within DDA3937_RS04215 at 932.951 kb on + strand, within DDA3937_RS04215 at 932.951 kb on + strand, within DDA3937_RS04215 at 932.951 kb on + strand, within DDA3937_RS04215 at 932.952 kb on - strand, within DDA3937_RS04215 at 932.952 kb on - strand, within DDA3937_RS04215
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 930,453 + +1.7 930,453 + +0.2 930,478 - -1.8 930,502 - +2.8 930,668 + DDA3937_RS04200 0.25 -0.8 930,699 + DDA3937_RS04200 0.28 +1.0 930,699 + DDA3937_RS04200 0.28 -1.2 930,699 + DDA3937_RS04200 0.28 +1.7 930,699 + DDA3937_RS04200 0.28 +0.3 930,699 + DDA3937_RS04200 0.28 -1.1 930,700 - DDA3937_RS04200 0.28 -2.0 930,700 - DDA3937_RS04200 0.28 -3.1 930,700 - DDA3937_RS04200 0.28 -0.1 930,701 + DDA3937_RS04200 0.28 +1.1 930,701 + DDA3937_RS04200 0.28 +0.5 930,701 + DDA3937_RS04200 0.28 +0.5 930,701 + DDA3937_RS04200 0.28 +0.8 930,702 - DDA3937_RS04200 0.28 -1.5 930,702 - DDA3937_RS04200 0.28 -2.3 930,702 - DDA3937_RS04200 0.28 +0.2 930,702 - DDA3937_RS04200 0.28 -2.2 930,797 - DDA3937_RS04200 0.37 -0.8 930,831 - DDA3937_RS04200 0.40 -1.5 931,053 + DDA3937_RS04200 0.62 +1.1 931,256 + DDA3937_RS04200 0.82 -2.8 931,256 + DDA3937_RS04200 0.82 -0.3 931,257 - DDA3937_RS04200 0.82 -2.2 931,257 - DDA3937_RS04200 0.82 -1.7 931,257 - DDA3937_RS04200 0.82 -3.6 931,257 - DDA3937_RS04200 0.82 +1.0 931,257 - DDA3937_RS04200 0.82 -0.8 931,257 - DDA3937_RS04200 0.82 -1.3 931,257 - DDA3937_RS04200 0.82 -0.2 931,257 - DDA3937_RS04200 0.82 +0.9 931,257 - DDA3937_RS04200 0.82 -3.2 931,257 - DDA3937_RS04200 0.82 -2.4 931,257 - DDA3937_RS04200 0.82 -0.5 931,257 - DDA3937_RS04200 0.82 -0.8 931,260 + DDA3937_RS04200 0.82 -0.5 931,260 + DDA3937_RS04200 0.82 -0.8 931,260 + DDA3937_RS04200 0.82 -1.7 931,261 - DDA3937_RS04200 0.82 +0.6 931,261 - DDA3937_RS04200 0.82 +0.9 931,261 - DDA3937_RS04200 0.82 +1.5 931,261 - DDA3937_RS04200 0.82 -2.9 931,261 - DDA3937_RS04200 0.82 -0.5 931,261 - DDA3937_RS04200 0.82 -1.3 931,261 - DDA3937_RS04200 0.82 +0.5 931,329 + DDA3937_RS04200 0.89 -1.8 931,329 + DDA3937_RS04200 0.89 +0.9 931,330 - +0.5 931,347 + +0.2 931,359 + +0.5 931,371 + -0.1 931,372 - -2.1 931,372 - +1.3 931,372 - -1.3 931,372 - +0.3 931,421 + -1.3 931,475 + -1.8 931,504 + +1.6 931,505 - -3.5 931,613 - DDA3937_RS04205 0.23 -1.8 931,613 - DDA3937_RS04205 0.23 -0.1 931,658 - DDA3937_RS04205 0.30 +1.1 931,687 - DDA3937_RS04205 0.34 +0.4 931,767 - DDA3937_RS04205 0.45 +1.0 931,767 - DDA3937_RS04205 0.45 +0.1 931,907 + DDA3937_RS04205 0.65 -2.5 931,953 - DDA3937_RS04205 0.72 +2.7 931,979 - DDA3937_RS04205 0.75 +0.5 932,060 - DDA3937_RS04205 0.87 -1.8 932,060 - DDA3937_RS04205 0.87 -1.1 932,095 + +1.2 932,149 - -0.8 932,149 - +0.4 932,157 - +1.2 932,271 + +2.6 932,387 - DDA3937_RS04210 0.31 +2.2 932,695 + +2.3 932,696 - -0.3 932,696 - +0.3 932,791 + DDA3937_RS04215 0.19 +3.6 932,825 + DDA3937_RS04215 0.26 +3.4 932,825 + DDA3937_RS04215 0.26 +1.6 932,826 - DDA3937_RS04215 0.26 +0.2 932,951 + DDA3937_RS04215 0.51 -2.3 932,951 + DDA3937_RS04215 0.51 -0.9 932,951 + DDA3937_RS04215 0.51 +0.9 932,951 + DDA3937_RS04215 0.51 +1.5 932,952 - DDA3937_RS04215 0.51 -1.7 932,952 - DDA3937_RS04215 0.51 +2.0
Or see this region's nucleotide sequence