Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03675 and DDA3937_RS03680 are separated by 187 nucleotides DDA3937_RS03680 and DDA3937_RS03685 are separated by 258 nucleotides DDA3937_RS03685 and DDA3937_RS23020 are separated by 322 nucleotides DDA3937_RS23020 and DDA3937_RS03690 are separated by 358 nucleotides
DDA3937_RS03675: DDA3937_RS03675 - 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing), at 811,767 to 813,698
_RS03675
DDA3937_RS03680: DDA3937_RS03680 - DNA gyrase inhibitor SbmC, at 813,886 to 814,347
_RS03680
DDA3937_RS03685: DDA3937_RS03685 - PAS domain-containing methyl-accepting chemotaxis protein, at 814,606 to 815,904
_RS03685
DDA3937_RS23020: DDA3937_RS23020 - hypothetical protein, at 816,227 to 816,424
_RS23020
DDA3937_RS03690: DDA3937_RS03690 - AAA family ATPase, at 816,783 to 817,532
_RS03690
Position (kb) 814
815
816 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 813.693 kb on + strand at 813.693 kb on + strand at 813.693 kb on + strand at 813.693 kb on + strand at 813.693 kb on + strand at 813.694 kb on - strand at 813.694 kb on - strand at 813.696 kb on + strand at 813.696 kb on + strand at 813.696 kb on + strand at 813.697 kb on - strand at 813.759 kb on - strand at 813.789 kb on - strand at 813.789 kb on - strand at 813.797 kb on + strand at 813.797 kb on + strand at 813.797 kb on + strand at 813.798 kb on - strand at 813.798 kb on - strand at 813.799 kb on + strand at 813.900 kb on + strand at 813.900 kb on + strand at 813.900 kb on + strand at 813.900 kb on + strand at 813.900 kb on + strand at 813.901 kb on - strand at 813.901 kb on - strand at 813.906 kb on + strand at 813.906 kb on + strand at 813.942 kb on + strand, within DDA3937_RS03680 at 813.942 kb on + strand, within DDA3937_RS03680 at 813.942 kb on + strand, within DDA3937_RS03680 at 813.942 kb on + strand, within DDA3937_RS03680 at 813.943 kb on - strand, within DDA3937_RS03680 at 813.984 kb on + strand, within DDA3937_RS03680 at 813.985 kb on - strand, within DDA3937_RS03680 at 813.985 kb on - strand, within DDA3937_RS03680 at 813.997 kb on + strand, within DDA3937_RS03680 at 814.142 kb on - strand, within DDA3937_RS03680 at 814.142 kb on - strand, within DDA3937_RS03680 at 814.197 kb on - strand, within DDA3937_RS03680 at 814.340 kb on + strand at 814.341 kb on - strand at 814.341 kb on - strand at 814.341 kb on - strand at 814.347 kb on + strand at 814.347 kb on + strand at 814.347 kb on + strand at 814.358 kb on + strand at 814.377 kb on + strand at 814.377 kb on + strand at 814.381 kb on + strand at 814.381 kb on + strand at 814.382 kb on - strand at 814.390 kb on + strand at 814.391 kb on - strand at 814.393 kb on + strand at 814.394 kb on - strand at 814.394 kb on - strand at 814.395 kb on + strand at 814.395 kb on + strand at 814.395 kb on + strand at 814.395 kb on + strand at 814.396 kb on - strand at 814.396 kb on - strand at 814.396 kb on - strand at 814.396 kb on - strand at 814.396 kb on - strand at 814.396 kb on - strand at 814.396 kb on - strand at 814.397 kb on + strand at 814.397 kb on + strand at 814.397 kb on + strand at 814.397 kb on + strand at 814.397 kb on + strand at 814.397 kb on + strand at 814.397 kb on + strand at 814.397 kb on + strand at 814.397 kb on + strand at 814.398 kb on - strand at 814.398 kb on - strand at 814.398 kb on - strand at 814.398 kb on - strand at 814.398 kb on - strand at 814.398 kb on - strand at 814.516 kb on + strand at 814.533 kb on + strand at 814.537 kb on + strand at 814.538 kb on - strand at 814.572 kb on - strand at 814.583 kb on + strand at 814.624 kb on + strand at 814.624 kb on + strand at 814.625 kb on - strand at 814.666 kb on - strand at 814.719 kb on + strand at 814.719 kb on + strand at 814.719 kb on + strand at 814.764 kb on + strand, within DDA3937_RS03685 at 814.764 kb on + strand, within DDA3937_RS03685 at 814.764 kb on + strand, within DDA3937_RS03685 at 814.765 kb on - strand, within DDA3937_RS03685 at 814.776 kb on + strand, within DDA3937_RS03685 at 814.776 kb on + strand, within DDA3937_RS03685 at 814.776 kb on + strand, within DDA3937_RS03685 at 814.776 kb on + strand, within DDA3937_RS03685 at 814.777 kb on - strand, within DDA3937_RS03685 at 814.777 kb on - strand, within DDA3937_RS03685 at 814.894 kb on - strand, within DDA3937_RS03685 at 815.061 kb on + strand, within DDA3937_RS03685 at 815.169 kb on - strand, within DDA3937_RS03685 at 815.200 kb on - strand, within DDA3937_RS03685 at 815.201 kb on + strand, within DDA3937_RS03685 at 815.201 kb on + strand, within DDA3937_RS03685 at 815.201 kb on + strand, within DDA3937_RS03685 at 815.201 kb on + strand, within DDA3937_RS03685 at 815.202 kb on - strand, within DDA3937_RS03685 at 815.202 kb on - strand, within DDA3937_RS03685 at 815.241 kb on + strand, within DDA3937_RS03685 at 815.277 kb on + strand, within DDA3937_RS03685 at 815.277 kb on + strand, within DDA3937_RS03685 at 815.278 kb on - strand, within DDA3937_RS03685 at 815.278 kb on - strand, within DDA3937_RS03685 at 815.321 kb on + strand, within DDA3937_RS03685 at 815.322 kb on - strand at 815.350 kb on + strand, within DDA3937_RS03685 at 815.350 kb on + strand, within DDA3937_RS03685 at 815.351 kb on - strand, within DDA3937_RS03685 at 815.351 kb on - strand, within DDA3937_RS03685 at 815.365 kb on - strand, within DDA3937_RS03685 at 815.365 kb on - strand, within DDA3937_RS03685 at 815.367 kb on - strand, within DDA3937_RS03685 at 815.389 kb on - strand, within DDA3937_RS03685 at 815.422 kb on - strand, within DDA3937_RS03685 at 815.422 kb on - strand, within DDA3937_RS03685 at 815.526 kb on + strand, within DDA3937_RS03685 at 815.526 kb on + strand, within DDA3937_RS03685 at 815.526 kb on + strand, within DDA3937_RS03685 at 815.526 kb on + strand, within DDA3937_RS03685 at 815.527 kb on - strand, within DDA3937_RS03685 at 815.527 kb on - strand, within DDA3937_RS03685 at 815.527 kb on - strand, within DDA3937_RS03685 at 815.527 kb on - strand, within DDA3937_RS03685 at 815.527 kb on - strand, within DDA3937_RS03685 at 815.527 kb on - strand, within DDA3937_RS03685 at 815.561 kb on + strand, within DDA3937_RS03685 at 815.561 kb on + strand, within DDA3937_RS03685 at 815.600 kb on + strand, within DDA3937_RS03685 at 815.655 kb on + strand, within DDA3937_RS03685 at 815.655 kb on + strand, within DDA3937_RS03685 at 815.655 kb on + strand, within DDA3937_RS03685 at 815.678 kb on + strand, within DDA3937_RS03685 at 815.679 kb on - strand at 815.679 kb on - strand, within DDA3937_RS03685 at 815.695 kb on + strand, within DDA3937_RS03685 at 815.695 kb on + strand, within DDA3937_RS03685 at 815.698 kb on - strand, within DDA3937_RS03685 at 815.698 kb on - strand, within DDA3937_RS03685 at 815.716 kb on + strand, within DDA3937_RS03685 at 815.717 kb on - strand, within DDA3937_RS03685 at 815.717 kb on - strand, within DDA3937_RS03685 at 815.730 kb on + strand, within DDA3937_RS03685 at 815.730 kb on + strand, within DDA3937_RS03685 at 815.730 kb on + strand, within DDA3937_RS03685 at 815.730 kb on + strand, within DDA3937_RS03685 at 815.730 kb on + strand, within DDA3937_RS03685 at 815.731 kb on - strand, within DDA3937_RS03685 at 815.731 kb on - strand, within DDA3937_RS03685 at 815.731 kb on - strand, within DDA3937_RS03685 at 815.731 kb on - strand, within DDA3937_RS03685 at 815.765 kb on + strand, within DDA3937_RS03685 at 815.798 kb on + strand at 815.799 kb on - strand at 815.799 kb on - strand at 815.799 kb on - strand at 815.826 kb on + strand at 815.826 kb on + strand at 815.827 kb on - strand at 815.827 kb on - strand at 815.915 kb on + strand at 815.915 kb on + strand at 815.915 kb on + strand at 815.916 kb on - strand at 815.916 kb on - strand at 815.916 kb on - strand at 815.928 kb on + strand at 815.929 kb on - strand at 815.929 kb on - strand at 815.943 kb on + strand at 815.959 kb on + strand at 815.976 kb on - strand at 815.982 kb on + strand at 815.983 kb on - strand at 815.983 kb on - strand at 815.986 kb on + strand at 815.987 kb on - strand at 815.992 kb on - strand at 816.080 kb on - strand at 816.082 kb on + strand at 816.082 kb on + strand at 816.083 kb on - strand at 816.094 kb on - strand at 816.094 kb on - strand at 816.100 kb on - strand at 816.100 kb on - strand at 816.123 kb on - strand at 816.141 kb on - strand at 816.142 kb on + strand at 816.229 kb on - strand at 816.366 kb on + strand, within DDA3937_RS23020 at 816.366 kb on + strand, within DDA3937_RS23020 at 816.413 kb on + strand at 816.413 kb on + strand at 816.414 kb on - strand at 816.414 kb on - strand at 816.414 kb on - strand at 816.414 kb on - strand at 816.415 kb on + strand at 816.415 kb on + strand at 816.416 kb on - strand at 816.416 kb on - strand at 816.416 kb on - strand at 816.416 kb on - strand at 816.417 kb on + strand at 816.417 kb on + strand at 816.418 kb on - strand at 816.418 kb on - strand at 816.438 kb on - strand at 816.550 kb on - strand at 816.565 kb on - strand at 816.583 kb on - strand at 816.583 kb on - strand at 816.669 kb on - strand at 816.740 kb on + strand at 816.879 kb on + strand, within DDA3937_RS03690 at 816.882 kb on - strand, within DDA3937_RS03690
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 813,693 + +2.6 813,693 + +3.6 813,693 + -0.5 813,693 + +1.6 813,693 + -1.9 813,694 - -0.9 813,694 - +2.5 813,696 + +1.3 813,696 + +0.7 813,696 + -0.4 813,697 - -0.9 813,759 - -1.9 813,789 - -1.5 813,789 - -1.0 813,797 + -0.4 813,797 + +1.4 813,797 + +1.4 813,798 - +0.7 813,798 - -1.6 813,799 + -0.4 813,900 + +0.0 813,900 + +1.7 813,900 + -1.8 813,900 + +0.6 813,900 + -0.7 813,901 - -1.5 813,901 - +1.8 813,906 + -2.4 813,906 + +1.7 813,942 + DDA3937_RS03680 0.12 -2.1 813,942 + DDA3937_RS03680 0.12 +1.6 813,942 + DDA3937_RS03680 0.12 +1.3 813,942 + DDA3937_RS03680 0.12 +0.4 813,943 - DDA3937_RS03680 0.12 -0.3 813,984 + DDA3937_RS03680 0.21 -2.1 813,985 - DDA3937_RS03680 0.21 +2.5 813,985 - DDA3937_RS03680 0.21 +1.3 813,997 + DDA3937_RS03680 0.24 +0.5 814,142 - DDA3937_RS03680 0.55 -0.1 814,142 - DDA3937_RS03680 0.55 -3.5 814,197 - DDA3937_RS03680 0.67 +2.6 814,340 + -2.7 814,341 - +1.2 814,341 - -1.5 814,341 - +1.0 814,347 + -2.2 814,347 + -2.9 814,347 + -3.4 814,358 + -0.1 814,377 + +0.5 814,377 + -2.4 814,381 + -2.5 814,381 + +0.5 814,382 - +1.3 814,390 + -0.6 814,391 - -0.6 814,393 + -0.1 814,394 - +0.2 814,394 - -0.2 814,395 + -0.1 814,395 + -1.4 814,395 + +0.8 814,395 + -0.6 814,396 - -2.6 814,396 - -2.0 814,396 - -2.4 814,396 - +0.1 814,396 - +0.9 814,396 - +1.2 814,396 - -2.7 814,397 + +0.5 814,397 + -2.7 814,397 + +0.7 814,397 + -0.1 814,397 + -3.1 814,397 + +1.0 814,397 + -0.1 814,397 + -1.5 814,397 + -1.0 814,398 - -0.4 814,398 - -1.4 814,398 - +0.5 814,398 - -0.1 814,398 - -0.7 814,398 - -0.4 814,516 + -1.2 814,533 + +0.6 814,537 + -1.2 814,538 - +1.9 814,572 - -2.0 814,583 + -1.4 814,624 + -3.1 814,624 + +0.4 814,625 - -2.4 814,666 - +0.2 814,719 + -0.7 814,719 + -0.9 814,719 + -0.1 814,764 + DDA3937_RS03685 0.12 -2.9 814,764 + DDA3937_RS03685 0.12 -0.9 814,764 + DDA3937_RS03685 0.12 +1.0 814,765 - DDA3937_RS03685 0.12 -0.2 814,776 + DDA3937_RS03685 0.13 -1.2 814,776 + DDA3937_RS03685 0.13 -0.9 814,776 + DDA3937_RS03685 0.13 -0.4 814,776 + DDA3937_RS03685 0.13 -1.1 814,777 - DDA3937_RS03685 0.13 -1.7 814,777 - DDA3937_RS03685 0.13 -1.7 814,894 - DDA3937_RS03685 0.22 -0.3 815,061 + DDA3937_RS03685 0.35 -2.5 815,169 - DDA3937_RS03685 0.43 +0.8 815,200 - DDA3937_RS03685 0.46 +1.8 815,201 + DDA3937_RS03685 0.46 -0.2 815,201 + DDA3937_RS03685 0.46 -3.3 815,201 + DDA3937_RS03685 0.46 -3.0 815,201 + DDA3937_RS03685 0.46 -0.9 815,202 - DDA3937_RS03685 0.46 -1.1 815,202 - DDA3937_RS03685 0.46 +2.0 815,241 + DDA3937_RS03685 0.49 +0.4 815,277 + DDA3937_RS03685 0.52 -1.0 815,277 + DDA3937_RS03685 0.52 +0.7 815,278 - DDA3937_RS03685 0.52 -1.7 815,278 - DDA3937_RS03685 0.52 -1.3 815,321 + DDA3937_RS03685 0.55 +0.5 815,322 - +0.5 815,350 + DDA3937_RS03685 0.57 +0.5 815,350 + DDA3937_RS03685 0.57 -1.3 815,351 - DDA3937_RS03685 0.57 -3.2 815,351 - DDA3937_RS03685 0.57 -1.7 815,365 - DDA3937_RS03685 0.58 -1.5 815,365 - DDA3937_RS03685 0.58 -1.5 815,367 - DDA3937_RS03685 0.59 -1.9 815,389 - DDA3937_RS03685 0.60 -1.1 815,422 - DDA3937_RS03685 0.63 -0.5 815,422 - DDA3937_RS03685 0.63 -0.8 815,526 + DDA3937_RS03685 0.71 -1.3 815,526 + DDA3937_RS03685 0.71 -1.3 815,526 + DDA3937_RS03685 0.71 +1.6 815,526 + DDA3937_RS03685 0.71 +0.3 815,527 - DDA3937_RS03685 0.71 -0.5 815,527 - DDA3937_RS03685 0.71 -1.1 815,527 - DDA3937_RS03685 0.71 +0.5 815,527 - DDA3937_RS03685 0.71 -2.1 815,527 - DDA3937_RS03685 0.71 -1.2 815,527 - DDA3937_RS03685 0.71 +0.1 815,561 + DDA3937_RS03685 0.74 -0.3 815,561 + DDA3937_RS03685 0.74 -0.6 815,600 + DDA3937_RS03685 0.77 -2.3 815,655 + DDA3937_RS03685 0.81 -0.7 815,655 + DDA3937_RS03685 0.81 +0.6 815,655 + DDA3937_RS03685 0.81 -0.7 815,678 + DDA3937_RS03685 0.83 -0.5 815,679 - -0.5 815,679 - DDA3937_RS03685 0.83 -0.7 815,695 + DDA3937_RS03685 0.84 -1.9 815,695 + DDA3937_RS03685 0.84 +0.6 815,698 - DDA3937_RS03685 0.84 +1.7 815,698 - DDA3937_RS03685 0.84 -2.6 815,716 + DDA3937_RS03685 0.85 -2.6 815,717 - DDA3937_RS03685 0.86 +0.6 815,717 - DDA3937_RS03685 0.86 -2.5 815,730 + DDA3937_RS03685 0.87 +2.6 815,730 + DDA3937_RS03685 0.87 -2.2 815,730 + DDA3937_RS03685 0.87 -1.5 815,730 + DDA3937_RS03685 0.87 -0.6 815,730 + DDA3937_RS03685 0.87 -1.2 815,731 - DDA3937_RS03685 0.87 -1.0 815,731 - DDA3937_RS03685 0.87 +2.0 815,731 - DDA3937_RS03685 0.87 -2.2 815,731 - DDA3937_RS03685 0.87 -2.0 815,765 + DDA3937_RS03685 0.89 -1.7 815,798 + -1.9 815,799 - -3.0 815,799 - -0.5 815,799 - -1.5 815,826 + -1.9 815,826 + -0.1 815,827 - -1.9 815,827 - +0.2 815,915 + -0.0 815,915 + -1.9 815,915 + -3.8 815,916 - -0.6 815,916 - -3.1 815,916 - -1.1 815,928 + +0.6 815,929 - +0.1 815,929 - +2.3 815,943 + +1.7 815,959 + +0.6 815,976 - -0.7 815,982 + -1.3 815,983 - +0.6 815,983 - +0.5 815,986 + +0.6 815,987 - -1.7 815,992 - +2.2 816,080 - -0.1 816,082 + -0.5 816,082 + -1.3 816,083 - -1.7 816,094 - -1.7 816,094 - +0.0 816,100 - +0.4 816,100 - +0.1 816,123 - +0.5 816,141 - +0.1 816,142 + -1.0 816,229 - -0.4 816,366 + DDA3937_RS23020 0.70 +2.0 816,366 + DDA3937_RS23020 0.70 -1.5 816,413 + +2.0 816,413 + +2.0 816,414 - -0.5 816,414 - -0.3 816,414 - -2.1 816,414 - +0.6 816,415 + +0.5 816,415 + -0.8 816,416 - -0.4 816,416 - -3.3 816,416 - -0.6 816,416 - +0.8 816,417 + -0.1 816,417 + -0.5 816,418 - -0.7 816,418 - -1.0 816,438 - -0.2 816,550 - +0.7 816,565 - -0.2 816,583 - +0.7 816,583 - -2.0 816,669 - +0.6 816,740 + -0.6 816,879 + DDA3937_RS03690 0.13 -1.3 816,882 - DDA3937_RS03690 0.13 -0.9
Or see this region's nucleotide sequence