Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03520 and DDA3937_RS03525 are separated by 148 nucleotides DDA3937_RS03525 and DDA3937_RS03530 are separated by 4 nucleotides DDA3937_RS03530 and DDA3937_RS03535 are separated by 227 nucleotides
DDA3937_RS03520: DDA3937_RS03520 - ABC transporter ATP-binding protein, at 774,510 to 775,283
_RS03520
DDA3937_RS03525: DDA3937_RS03525 - sigma-70 family RNA polymerase sigma factor, at 775,432 to 775,968
_RS03525
DDA3937_RS03530: DDA3937_RS03530 - DUF4880 domain-containing protein, at 775,973 to 776,926
_RS03530
DDA3937_RS03535: DDA3937_RS03535 - AI-2E family transporter, at 777,154 to 778,164
_RS03535
Position (kb) 775
776
777 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 775.083 kb on + strand, within DDA3937_RS03520 at 775.083 kb on + strand, within DDA3937_RS03520 at 775.084 kb on - strand, within DDA3937_RS03520 at 775.084 kb on - strand, within DDA3937_RS03520 at 775.084 kb on - strand, within DDA3937_RS03520 at 775.149 kb on + strand, within DDA3937_RS03520 at 775.150 kb on - strand, within DDA3937_RS03520 at 775.158 kb on - strand, within DDA3937_RS03520 at 775.196 kb on + strand, within DDA3937_RS03520 at 775.197 kb on - strand at 775.214 kb on + strand at 775.215 kb on - strand at 775.215 kb on - strand at 775.245 kb on + strand at 775.245 kb on + strand at 775.246 kb on - strand at 775.246 kb on - strand at 775.282 kb on - strand at 775.310 kb on + strand at 775.310 kb on + strand at 775.310 kb on + strand at 775.310 kb on + strand at 775.311 kb on - strand at 775.311 kb on - strand at 775.311 kb on - strand at 775.313 kb on + strand at 775.314 kb on - strand at 775.348 kb on - strand at 775.507 kb on + strand, within DDA3937_RS03525 at 775.507 kb on + strand, within DDA3937_RS03525 at 775.507 kb on + strand, within DDA3937_RS03525 at 775.508 kb on - strand, within DDA3937_RS03525 at 775.873 kb on + strand, within DDA3937_RS03525 at 775.873 kb on + strand, within DDA3937_RS03525 at 775.874 kb on - strand, within DDA3937_RS03525 at 775.874 kb on - strand, within DDA3937_RS03525 at 775.924 kb on + strand at 775.924 kb on + strand at 775.925 kb on - strand at 776.006 kb on + strand at 776.006 kb on + strand at 776.006 kb on + strand at 776.006 kb on + strand at 776.007 kb on - strand at 776.007 kb on - strand at 776.007 kb on - strand at 776.007 kb on - strand at 776.007 kb on - strand at 776.007 kb on - strand at 776.007 kb on - strand at 776.033 kb on + strand at 776.259 kb on + strand, within DDA3937_RS03530 at 776.259 kb on + strand, within DDA3937_RS03530 at 776.259 kb on + strand, within DDA3937_RS03530 at 776.260 kb on - strand, within DDA3937_RS03530 at 776.260 kb on - strand, within DDA3937_RS03530 at 776.260 kb on - strand, within DDA3937_RS03530 at 776.260 kb on - strand, within DDA3937_RS03530 at 776.264 kb on + strand at 776.265 kb on - strand, within DDA3937_RS03530 at 776.285 kb on + strand, within DDA3937_RS03530 at 776.286 kb on - strand, within DDA3937_RS03530 at 776.458 kb on + strand, within DDA3937_RS03530 at 776.458 kb on + strand, within DDA3937_RS03530 at 776.527 kb on + strand, within DDA3937_RS03530 at 776.527 kb on + strand, within DDA3937_RS03530 at 776.528 kb on - strand, within DDA3937_RS03530 at 776.528 kb on - strand, within DDA3937_RS03530 at 776.573 kb on + strand, within DDA3937_RS03530 at 776.573 kb on + strand, within DDA3937_RS03530 at 776.574 kb on - strand, within DDA3937_RS03530 at 776.636 kb on + strand, within DDA3937_RS03530 at 776.636 kb on + strand, within DDA3937_RS03530 at 776.637 kb on - strand, within DDA3937_RS03530 at 776.873 kb on - strand at 776.968 kb on + strand at 776.974 kb on + strand at 776.979 kb on + strand at 776.979 kb on + strand at 776.979 kb on + strand at 776.979 kb on + strand at 776.979 kb on + strand at 776.979 kb on + strand at 776.979 kb on + strand at 776.979 kb on + strand at 776.979 kb on + strand at 776.980 kb on - strand at 776.980 kb on - strand at 776.980 kb on - strand at 776.980 kb on - strand at 776.980 kb on - strand at 777.030 kb on + strand at 777.048 kb on + strand at 777.051 kb on + strand at 777.052 kb on - strand at 777.131 kb on - strand at 777.153 kb on + strand at 777.153 kb on + strand at 777.153 kb on + strand at 777.153 kb on + strand at 777.154 kb on - strand at 777.154 kb on - strand at 777.154 kb on - strand at 777.154 kb on - strand at 777.154 kb on - strand at 777.201 kb on + strand at 777.202 kb on - strand at 777.253 kb on - strand at 777.271 kb on + strand, within DDA3937_RS03535 at 777.271 kb on + strand, within DDA3937_RS03535 at 777.272 kb on - strand, within DDA3937_RS03535 at 777.357 kb on + strand, within DDA3937_RS03535 at 777.494 kb on - strand, within DDA3937_RS03535 at 777.506 kb on - strand, within DDA3937_RS03535 at 777.655 kb on + strand, within DDA3937_RS03535 at 777.655 kb on + strand, within DDA3937_RS03535 at 777.655 kb on + strand, within DDA3937_RS03535 at 777.655 kb on + strand, within DDA3937_RS03535 at 777.656 kb on - strand, within DDA3937_RS03535 at 777.656 kb on - strand, within DDA3937_RS03535 at 777.656 kb on - strand, within DDA3937_RS03535 at 777.657 kb on + strand, within DDA3937_RS03535 at 777.658 kb on - strand, within DDA3937_RS03535 at 777.658 kb on - strand, within DDA3937_RS03535 at 777.658 kb on - strand, within DDA3937_RS03535 at 777.658 kb on - strand, within DDA3937_RS03535 at 777.764 kb on + strand, within DDA3937_RS03535 at 777.894 kb on + strand, within DDA3937_RS03535 at 777.895 kb on - strand, within DDA3937_RS03535 at 777.895 kb on - strand, within DDA3937_RS03535
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 775,083 + DDA3937_RS03520 0.74 +0.7 775,083 + DDA3937_RS03520 0.74 -0.9 775,084 - DDA3937_RS03520 0.74 -2.1 775,084 - DDA3937_RS03520 0.74 -2.7 775,084 - DDA3937_RS03520 0.74 +1.1 775,149 + DDA3937_RS03520 0.83 -0.8 775,150 - DDA3937_RS03520 0.83 +0.1 775,158 - DDA3937_RS03520 0.84 -1.3 775,196 + DDA3937_RS03520 0.89 -1.2 775,197 - +0.5 775,214 + -1.1 775,215 - -1.3 775,215 - -1.0 775,245 + +1.7 775,245 + +0.5 775,246 - +0.4 775,246 - -0.9 775,282 - -2.0 775,310 + +0.8 775,310 + +0.1 775,310 + +0.4 775,310 + +1.1 775,311 - -1.1 775,311 - +0.1 775,311 - +0.4 775,313 + +2.1 775,314 - -2.6 775,348 - +1.6 775,507 + DDA3937_RS03525 0.14 +1.3 775,507 + DDA3937_RS03525 0.14 -2.2 775,507 + DDA3937_RS03525 0.14 +2.0 775,508 - DDA3937_RS03525 0.14 -0.4 775,873 + DDA3937_RS03525 0.82 -2.4 775,873 + DDA3937_RS03525 0.82 -1.5 775,874 - DDA3937_RS03525 0.82 -0.4 775,874 - DDA3937_RS03525 0.82 -1.1 775,924 + -1.3 775,924 + -1.5 775,925 - +0.2 776,006 + -1.8 776,006 + +1.3 776,006 + -0.5 776,006 + +0.1 776,007 - +0.4 776,007 - +0.4 776,007 - +1.3 776,007 - +0.8 776,007 - -0.2 776,007 - -1.8 776,007 - -1.3 776,033 + -0.5 776,259 + DDA3937_RS03530 0.30 -2.0 776,259 + DDA3937_RS03530 0.30 -0.5 776,259 + DDA3937_RS03530 0.30 +0.3 776,260 - DDA3937_RS03530 0.30 -1.5 776,260 - DDA3937_RS03530 0.30 -0.9 776,260 - DDA3937_RS03530 0.30 +1.5 776,260 - DDA3937_RS03530 0.30 -1.1 776,264 + +0.5 776,265 - DDA3937_RS03530 0.31 -0.1 776,285 + DDA3937_RS03530 0.33 -1.5 776,286 - DDA3937_RS03530 0.33 -1.5 776,458 + DDA3937_RS03530 0.51 -0.7 776,458 + DDA3937_RS03530 0.51 -1.2 776,527 + DDA3937_RS03530 0.58 +0.0 776,527 + DDA3937_RS03530 0.58 -0.1 776,528 - DDA3937_RS03530 0.58 -2.1 776,528 - DDA3937_RS03530 0.58 +0.6 776,573 + DDA3937_RS03530 0.63 -1.5 776,573 + DDA3937_RS03530 0.63 -3.2 776,574 - DDA3937_RS03530 0.63 -1.1 776,636 + DDA3937_RS03530 0.69 -2.2 776,636 + DDA3937_RS03530 0.69 +0.1 776,637 - DDA3937_RS03530 0.70 +0.0 776,873 - -1.4 776,968 + +1.3 776,974 + -0.5 776,979 + -2.0 776,979 + -1.8 776,979 + +0.6 776,979 + -0.2 776,979 + -1.1 776,979 + -1.3 776,979 + -1.7 776,979 + +1.0 776,979 + -1.1 776,980 - -1.1 776,980 - -2.8 776,980 - +2.3 776,980 - -0.5 776,980 - +2.6 777,030 + -2.3 777,048 + -2.0 777,051 + +0.9 777,052 - -1.8 777,131 - -0.8 777,153 + +2.1 777,153 + -1.3 777,153 + -2.6 777,153 + +1.2 777,154 - -1.9 777,154 - +2.7 777,154 - -0.9 777,154 - +2.0 777,154 - +1.5 777,201 + -0.4 777,202 - +0.3 777,253 - +0.9 777,271 + DDA3937_RS03535 0.12 -1.4 777,271 + DDA3937_RS03535 0.12 +0.5 777,272 - DDA3937_RS03535 0.12 -2.1 777,357 + DDA3937_RS03535 0.20 -0.3 777,494 - DDA3937_RS03535 0.34 -0.5 777,506 - DDA3937_RS03535 0.35 -0.0 777,655 + DDA3937_RS03535 0.50 -1.8 777,655 + DDA3937_RS03535 0.50 +1.1 777,655 + DDA3937_RS03535 0.50 -1.8 777,655 + DDA3937_RS03535 0.50 +1.3 777,656 - DDA3937_RS03535 0.50 +0.3 777,656 - DDA3937_RS03535 0.50 -1.5 777,656 - DDA3937_RS03535 0.50 -0.7 777,657 + DDA3937_RS03535 0.50 +1.0 777,658 - DDA3937_RS03535 0.50 -0.7 777,658 - DDA3937_RS03535 0.50 +0.3 777,658 - DDA3937_RS03535 0.50 +1.9 777,658 - DDA3937_RS03535 0.50 +0.7 777,764 + DDA3937_RS03535 0.60 +0.7 777,894 + DDA3937_RS03535 0.73 -0.8 777,895 - DDA3937_RS03535 0.73 -3.0 777,895 - DDA3937_RS03535 0.73 +0.8
Or see this region's nucleotide sequence