Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS03435

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS03430 and DDA3937_RS03435 are separated by 5 nucleotidesDDA3937_RS03435 and DDA3937_RS03440 are separated by 10 nucleotidesDDA3937_RS03440 and DDA3937_RS03445 overlap by 11 nucleotides DDA3937_RS03430: DDA3937_RS03430 - ABC transporter ATP-binding protein, at 749,965 to 751,044 _RS03430 DDA3937_RS03435: DDA3937_RS03435 - phosphodiesterase, at 751,050 to 751,871 _RS03435 DDA3937_RS03440: DDA3937_RS03440 - carbohydrate ABC transporter permease, at 751,882 to 752,769 _RS03440 DDA3937_RS03445: DDA3937_RS03445 - sugar ABC transporter permease, at 752,759 to 753,631 _RS03445 Position (kb) 751 752Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 750.134 kb on + strand, within DDA3937_RS03430at 750.134 kb on + strand, within DDA3937_RS03430at 750.134 kb on + strand, within DDA3937_RS03430at 750.135 kb on - strand, within DDA3937_RS03430at 750.292 kb on + strandat 750.292 kb on + strand, within DDA3937_RS03430at 750.293 kb on - strand, within DDA3937_RS03430at 750.387 kb on - strand, within DDA3937_RS03430at 750.485 kb on + strand, within DDA3937_RS03430at 750.800 kb on + strand, within DDA3937_RS03430at 750.801 kb on - strand, within DDA3937_RS03430at 750.801 kb on - strand, within DDA3937_RS03430at 750.801 kb on - strand, within DDA3937_RS03430at 751.039 kb on + strandat 751.040 kb on - strandat 751.040 kb on - strandat 751.040 kb on - strandat 751.045 kb on - strandat 751.045 kb on - strandat 751.045 kb on - strandat 751.045 kb on - strandat 751.052 kb on - strandat 751.087 kb on + strandat 751.105 kb on + strandat 751.106 kb on - strandat 751.106 kb on - strandat 751.127 kb on - strandat 751.186 kb on + strand, within DDA3937_RS03435at 751.187 kb on - strand, within DDA3937_RS03435at 751.189 kb on + strand, within DDA3937_RS03435at 751.189 kb on + strand, within DDA3937_RS03435at 751.189 kb on + strand, within DDA3937_RS03435at 751.189 kb on + strand, within DDA3937_RS03435at 751.213 kb on + strand, within DDA3937_RS03435at 751.213 kb on + strand, within DDA3937_RS03435at 751.214 kb on - strand, within DDA3937_RS03435at 751.214 kb on - strand, within DDA3937_RS03435at 751.304 kb on + strand, within DDA3937_RS03435at 751.305 kb on - strand, within DDA3937_RS03435at 751.305 kb on - strand, within DDA3937_RS03435at 751.424 kb on + strand, within DDA3937_RS03435at 751.425 kb on - strand, within DDA3937_RS03435at 751.559 kb on + strand, within DDA3937_RS03435at 751.560 kb on - strand, within DDA3937_RS03435at 751.603 kb on + strand, within DDA3937_RS03435at 751.604 kb on - strand, within DDA3937_RS03435at 751.604 kb on - strand, within DDA3937_RS03435at 751.693 kb on + strand, within DDA3937_RS03435at 751.694 kb on - strand, within DDA3937_RS03435at 751.694 kb on - strand, within DDA3937_RS03435at 751.766 kb on + strand, within DDA3937_RS03435at 751.766 kb on + strand, within DDA3937_RS03435at 751.766 kb on + strand, within DDA3937_RS03435at 751.767 kb on - strand, within DDA3937_RS03435at 751.767 kb on - strand, within DDA3937_RS03435at 751.817 kb on - strandat 751.888 kb on + strandat 751.889 kb on - strandat 751.936 kb on - strandat 752.088 kb on - strand, within DDA3937_RS03440at 752.088 kb on - strand, within DDA3937_RS03440at 752.102 kb on + strand, within DDA3937_RS03440at 752.103 kb on - strand, within DDA3937_RS03440at 752.106 kb on + strand, within DDA3937_RS03440at 752.106 kb on + strand, within DDA3937_RS03440at 752.106 kb on + strand, within DDA3937_RS03440at 752.106 kb on + strand, within DDA3937_RS03440at 752.106 kb on + strand, within DDA3937_RS03440at 752.106 kb on + strand, within DDA3937_RS03440at 752.106 kb on + strand, within DDA3937_RS03440at 752.106 kb on + strand, within DDA3937_RS03440at 752.107 kb on - strand, within DDA3937_RS03440at 752.107 kb on - strand, within DDA3937_RS03440at 752.107 kb on - strand, within DDA3937_RS03440at 752.167 kb on + strand, within DDA3937_RS03440at 752.168 kb on - strand, within DDA3937_RS03440at 752.276 kb on + strand, within DDA3937_RS03440at 752.277 kb on - strand, within DDA3937_RS03440at 752.301 kb on + strand, within DDA3937_RS03440at 752.432 kb on + strand, within DDA3937_RS03440at 752.432 kb on + strand, within DDA3937_RS03440at 752.433 kb on - strand, within DDA3937_RS03440at 752.433 kb on - strand, within DDA3937_RS03440at 752.501 kb on + strand, within DDA3937_RS03440at 752.502 kb on - strand, within DDA3937_RS03440at 752.509 kb on + strand, within DDA3937_RS03440at 752.544 kb on + strand, within DDA3937_RS03440at 752.631 kb on + strand, within DDA3937_RS03440at 752.769 kb on + strandat 752.820 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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750,134 + DDA3937_RS03430 0.16 -2.7
750,134 + DDA3937_RS03430 0.16 +1.0
750,134 + DDA3937_RS03430 0.16 +1.3
750,135 - DDA3937_RS03430 0.16 +0.3
750,292 + -0.1
750,292 + DDA3937_RS03430 0.30 -1.3
750,293 - DDA3937_RS03430 0.30 +0.4
750,387 - DDA3937_RS03430 0.39 -1.5
750,485 + DDA3937_RS03430 0.48 +1.8
750,800 + DDA3937_RS03430 0.77 +0.8
750,801 - DDA3937_RS03430 0.77 -2.0
750,801 - DDA3937_RS03430 0.77 -1.1
750,801 - DDA3937_RS03430 0.77 -2.8
751,039 + +0.7
751,040 - -3.1
751,040 - +0.8
751,040 - -0.3
751,045 - +0.4
751,045 - -0.1
751,045 - -0.4
751,045 - +2.7
751,052 - -0.0
751,087 + -0.0
751,105 + +0.5
751,106 - -0.8
751,106 - -2.1
751,127 - +0.6
751,186 + DDA3937_RS03435 0.17 -0.7
751,187 - DDA3937_RS03435 0.17 -2.4
751,189 + DDA3937_RS03435 0.17 -0.3
751,189 + DDA3937_RS03435 0.17 -2.2
751,189 + DDA3937_RS03435 0.17 -1.3
751,189 + DDA3937_RS03435 0.17 -2.2
751,213 + DDA3937_RS03435 0.20 -0.0
751,213 + DDA3937_RS03435 0.20 -1.1
751,214 - DDA3937_RS03435 0.20 +0.1
751,214 - DDA3937_RS03435 0.20 -1.1
751,304 + DDA3937_RS03435 0.31 -0.6
751,305 - DDA3937_RS03435 0.31 +1.6
751,305 - DDA3937_RS03435 0.31 -0.8
751,424 + DDA3937_RS03435 0.45 -1.3
751,425 - DDA3937_RS03435 0.46 -0.5
751,559 + DDA3937_RS03435 0.62 -0.2
751,560 - DDA3937_RS03435 0.62 -0.5
751,603 + DDA3937_RS03435 0.67 -2.1
751,604 - DDA3937_RS03435 0.67 +0.3
751,604 - DDA3937_RS03435 0.67 -1.5
751,693 + DDA3937_RS03435 0.78 -0.5
751,694 - DDA3937_RS03435 0.78 +0.9
751,694 - DDA3937_RS03435 0.78 -1.1
751,766 + DDA3937_RS03435 0.87 +1.8
751,766 + DDA3937_RS03435 0.87 -1.0
751,766 + DDA3937_RS03435 0.87 -0.6
751,767 - DDA3937_RS03435 0.87 -2.7
751,767 - DDA3937_RS03435 0.87 +1.2
751,817 - -0.1
751,888 + -0.7
751,889 - +1.4
751,936 - -0.6
752,088 - DDA3937_RS03440 0.23 -1.5
752,088 - DDA3937_RS03440 0.23 -1.5
752,102 + DDA3937_RS03440 0.25 -1.1
752,103 - DDA3937_RS03440 0.25 +2.1
752,106 + DDA3937_RS03440 0.25 -0.7
752,106 + DDA3937_RS03440 0.25 -1.6
752,106 + DDA3937_RS03440 0.25 -0.1
752,106 + DDA3937_RS03440 0.25 +0.4
752,106 + DDA3937_RS03440 0.25 -2.3
752,106 + DDA3937_RS03440 0.25 -1.1
752,106 + DDA3937_RS03440 0.25 -2.3
752,106 + DDA3937_RS03440 0.25 -3.0
752,107 - DDA3937_RS03440 0.25 +1.3
752,107 - DDA3937_RS03440 0.25 -0.2
752,107 - DDA3937_RS03440 0.25 -1.4
752,167 + DDA3937_RS03440 0.32 -2.3
752,168 - DDA3937_RS03440 0.32 +0.4
752,276 + DDA3937_RS03440 0.44 +1.0
752,277 - DDA3937_RS03440 0.44 -0.7
752,301 + DDA3937_RS03440 0.47 +1.9
752,432 + DDA3937_RS03440 0.62 -0.4
752,432 + DDA3937_RS03440 0.62 +0.4
752,433 - DDA3937_RS03440 0.62 +1.4
752,433 - DDA3937_RS03440 0.62 +0.6
752,501 + DDA3937_RS03440 0.70 -1.5
752,502 - DDA3937_RS03440 0.70 +2.1
752,509 + DDA3937_RS03440 0.71 +1.3
752,544 + DDA3937_RS03440 0.75 -0.5
752,631 + DDA3937_RS03440 0.84 -2.3
752,769 + -2.8
752,820 - +0.7

Or see this region's nucleotide sequence